Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05035

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05030 and A4249_RS05035 are separated by 146 nucleotidesA4249_RS05035 and A4249_RS05040 are separated by 76 nucleotides A4249_RS05030: A4249_RS05030 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 1,040,670 to 1,041,470 _RS05030 A4249_RS05035: A4249_RS05035 - Mrp/NBP35 family ATP-binding protein, at 1,041,617 to 1,042,684 _RS05035 A4249_RS05040: A4249_RS05040 - NADH:flavin oxidoreductase, at 1,042,761 to 1,043,858 _RS05040 Position (kb) 1041 1042 1043Strain fitness (log2 ratio) -2 -1 0 1at 1041.574 kb on + strandat 1041.575 kb on - strandat 1041.575 kb on - strandat 1041.575 kb on - strandat 1041.847 kb on - strand, within A4249_RS05035at 1041.847 kb on - strand, within A4249_RS05035at 1041.847 kb on - strand, within A4249_RS05035at 1041.859 kb on + strand, within A4249_RS05035at 1041.859 kb on + strand, within A4249_RS05035at 1042.683 kb on - strandat 1042.739 kb on + strandat 1042.739 kb on + strandat 1042.740 kb on - strandat 1042.745 kb on + strandat 1042.745 kb on + strandat 1042.746 kb on - strandat 1042.746 kb on - strandat 1042.887 kb on + strand, within A4249_RS05040at 1042.887 kb on + strand, within A4249_RS05040at 1042.888 kb on - strand, within A4249_RS05040at 1042.888 kb on - strand, within A4249_RS05040at 1042.891 kb on - strand, within A4249_RS05040at 1043.052 kb on - strand, within A4249_RS05040at 1043.052 kb on - strand, within A4249_RS05040at 1043.277 kb on + strand, within A4249_RS05040at 1043.277 kb on + strand, within A4249_RS05040at 1043.277 kb on + strand, within A4249_RS05040at 1043.278 kb on - strand, within A4249_RS05040at 1043.278 kb on - strand, within A4249_RS05040at 1043.278 kb on - strand, within A4249_RS05040at 1043.278 kb on - strand, within A4249_RS05040at 1043.308 kb on + strand, within A4249_RS05040at 1043.308 kb on + strand, within A4249_RS05040at 1043.308 kb on + strand, within A4249_RS05040at 1043.308 kb on + strand, within A4249_RS05040at 1043.451 kb on + strand, within A4249_RS05040at 1043.451 kb on + strand, within A4249_RS05040at 1043.451 kb on + strand, within A4249_RS05040at 1043.452 kb on - strand, within A4249_RS05040at 1043.452 kb on - strand, within A4249_RS05040at 1043.452 kb on - strand, within A4249_RS05040at 1043.452 kb on - strand, within A4249_RS05040

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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1,041,574 + +0.8
1,041,575 - -0.3
1,041,575 - -0.3
1,041,575 - +0.2
1,041,847 - A4249_RS05035 0.22 -0.8
1,041,847 - A4249_RS05035 0.22 -0.2
1,041,847 - A4249_RS05035 0.22 -0.7
1,041,859 + A4249_RS05035 0.23 -1.9
1,041,859 + A4249_RS05035 0.23 +1.4
1,042,683 - +0.1
1,042,739 + -0.6
1,042,739 + +0.3
1,042,740 - -0.8
1,042,745 + -0.2
1,042,745 + +0.0
1,042,746 - -0.3
1,042,746 - -0.8
1,042,887 + A4249_RS05040 0.11 +0.1
1,042,887 + A4249_RS05040 0.11 -0.2
1,042,888 - A4249_RS05040 0.12 -0.0
1,042,888 - A4249_RS05040 0.12 +1.0
1,042,891 - A4249_RS05040 0.12 -1.1
1,043,052 - A4249_RS05040 0.27 +0.2
1,043,052 - A4249_RS05040 0.27 +0.6
1,043,277 + A4249_RS05040 0.47 -0.3
1,043,277 + A4249_RS05040 0.47 +0.6
1,043,277 + A4249_RS05040 0.47 +0.3
1,043,278 - A4249_RS05040 0.47 +0.1
1,043,278 - A4249_RS05040 0.47 -0.8
1,043,278 - A4249_RS05040 0.47 -0.1
1,043,278 - A4249_RS05040 0.47 -1.6
1,043,308 + A4249_RS05040 0.50 +0.1
1,043,308 + A4249_RS05040 0.50 -0.4
1,043,308 + A4249_RS05040 0.50 +0.3
1,043,308 + A4249_RS05040 0.50 +0.2
1,043,451 + A4249_RS05040 0.63 -0.2
1,043,451 + A4249_RS05040 0.63 -0.1
1,043,451 + A4249_RS05040 0.63 -0.0
1,043,452 - A4249_RS05040 0.63 -0.2
1,043,452 - A4249_RS05040 0.63 +0.1
1,043,452 - A4249_RS05040 0.63 +0.1
1,043,452 - A4249_RS05040 0.63 +0.6

Or see this region's nucleotide sequence