Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04940

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04930 and A4249_RS04935 overlap by 4 nucleotidesA4249_RS04935 and A4249_RS04940 overlap by 1 nucleotidesA4249_RS04940 and A4249_RS04945 are separated by 15 nucleotidesA4249_RS04945 and A4249_RS04950 overlap by 1 nucleotides A4249_RS04930: A4249_RS04930 - pyruvate dehydrogenase complex E1 component subunit beta, at 1,025,332 to 1,026,699 _RS04930 A4249_RS04935: A4249_RS04935 - DUF5076 domain-containing protein, at 1,026,696 to 1,027,013 _RS04935 A4249_RS04940: A4249_RS04940 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, at 1,027,013 to 1,028,314 _RS04940 A4249_RS04945: A4249_RS04945 - glutathione peroxidase, at 1,028,330 to 1,028,809 _RS04945 A4249_RS04950: A4249_RS04950 - dihydrolipoyl dehydrogenase, at 1,028,809 to 1,030,215 _RS04950 Position (kb) 1027 1028 1029Strain fitness (log2 ratio) -1 0 1at 1026.832 kb on + strand, within A4249_RS04935at 1028.342 kb on + strandat 1028.342 kb on + strandat 1028.342 kb on + strandat 1028.342 kb on + strandat 1028.453 kb on + strand, within A4249_RS04945at 1028.521 kb on + strand, within A4249_RS04945at 1028.522 kb on - strand, within A4249_RS04945at 1028.648 kb on + strand, within A4249_RS04945at 1028.648 kb on + strand, within A4249_RS04945at 1028.754 kb on - strand, within A4249_RS04945

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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1,026,832 + A4249_RS04935 0.43 -0.8
1,028,342 + +0.6
1,028,342 + +0.0
1,028,342 + +0.2
1,028,342 + -0.5
1,028,453 + A4249_RS04945 0.26 +0.1
1,028,521 + A4249_RS04945 0.40 -0.2
1,028,522 - A4249_RS04945 0.40 -0.6
1,028,648 + A4249_RS04945 0.66 -0.3
1,028,648 + A4249_RS04945 0.66 -0.2
1,028,754 - A4249_RS04945 0.88 -0.3

Or see this region's nucleotide sequence