Experiment: Xanthine 0.6574 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS03185 and A4249_RS03190 overlap by 35 nucleotides A4249_RS03190 and A4249_RS03195 are separated by 199 nucleotides A4249_RS03195 and A4249_RS03200 are separated by 65 nucleotides A4249_RS03200 and A4249_RS03205 are separated by 10 nucleotides
A4249_RS03185: A4249_RS03185 - type IV secretory system conjugative DNA transfer family protein, at 670,186 to 672,042
_RS03185
A4249_RS03190: A4249_RS03190 - ATPase, T2SS/T4P/T4SS family, at 672,008 to 672,340
_RS03190
A4249_RS03195: A4249_RS03195 - toxin-antitoxin system, antitoxin component, at 672,540 to 672,839
_RS03195
A4249_RS03200: A4249_RS03200 - ammonium transporter family protein, at 672,905 to 673,132
_RS03200
A4249_RS03205: A4249_RS03205 - copper resistance protein CopC, at 673,143 to 673,526
_RS03205
Position (kb) 672
673 Strain fitness (log2 ratio) -2
-1
0
1
2 at 671.118 kb on + strand, within A4249_RS03185 at 671.118 kb on + strand, within A4249_RS03185 at 671.118 kb on + strand, within A4249_RS03185 at 671.118 kb on + strand, within A4249_RS03185 at 671.118 kb on + strand, within A4249_RS03185 at 671.119 kb on - strand, within A4249_RS03185 at 671.119 kb on - strand, within A4249_RS03185 at 671.119 kb on - strand, within A4249_RS03185 at 671.119 kb on - strand, within A4249_RS03185 at 671.159 kb on + strand, within A4249_RS03185 at 671.159 kb on + strand, within A4249_RS03185 at 671.160 kb on - strand, within A4249_RS03185 at 671.160 kb on - strand, within A4249_RS03185 at 671.160 kb on - strand, within A4249_RS03185 at 671.160 kb on - strand, within A4249_RS03185 at 671.160 kb on - strand, within A4249_RS03185 at 671.249 kb on + strand, within A4249_RS03185 at 671.249 kb on + strand, within A4249_RS03185 at 671.249 kb on + strand, within A4249_RS03185 at 671.250 kb on - strand, within A4249_RS03185 at 671.250 kb on - strand, within A4249_RS03185 at 671.250 kb on - strand, within A4249_RS03185 at 671.514 kb on - strand, within A4249_RS03185 at 671.630 kb on + strand, within A4249_RS03185 at 671.630 kb on + strand, within A4249_RS03185 at 671.631 kb on - strand, within A4249_RS03185 at 671.631 kb on - strand, within A4249_RS03185 at 671.631 kb on - strand, within A4249_RS03185 at 671.870 kb on + strand at 671.871 kb on - strand at 671.873 kb on + strand at 671.873 kb on + strand at 671.873 kb on + strand at 671.873 kb on + strand at 671.873 kb on + strand at 671.873 kb on + strand at 671.874 kb on - strand at 671.874 kb on - strand at 671.874 kb on - strand at 672.261 kb on + strand, within A4249_RS03190 at 672.262 kb on - strand, within A4249_RS03190 at 672.262 kb on - strand, within A4249_RS03190 at 672.444 kb on - strand at 672.474 kb on + strand at 672.474 kb on + strand at 672.474 kb on + strand at 672.475 kb on - strand at 672.475 kb on - strand at 672.475 kb on - strand at 672.475 kb on - strand at 672.475 kb on - strand at 672.549 kb on + strand at 672.549 kb on + strand at 672.549 kb on + strand at 672.550 kb on - strand at 672.550 kb on - strand at 672.550 kb on - strand at 673.216 kb on + strand, within A4249_RS03205 at 673.216 kb on + strand, within A4249_RS03205 at 673.216 kb on + strand, within A4249_RS03205 at 673.216 kb on + strand, within A4249_RS03205 at 673.216 kb on + strand, within A4249_RS03205 at 673.216 kb on + strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205
Per-strain Table
Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C) remove 671,118 + A4249_RS03185 0.50 -0.1 671,118 + A4249_RS03185 0.50 -0.2 671,118 + A4249_RS03185 0.50 -0.6 671,118 + A4249_RS03185 0.50 +0.4 671,118 + A4249_RS03185 0.50 +0.4 671,119 - A4249_RS03185 0.50 -0.1 671,119 - A4249_RS03185 0.50 +0.6 671,119 - A4249_RS03185 0.50 +0.2 671,119 - A4249_RS03185 0.50 +0.6 671,159 + A4249_RS03185 0.52 +0.1 671,159 + A4249_RS03185 0.52 -1.7 671,160 - A4249_RS03185 0.52 -0.9 671,160 - A4249_RS03185 0.52 -1.0 671,160 - A4249_RS03185 0.52 +0.5 671,160 - A4249_RS03185 0.52 -0.1 671,160 - A4249_RS03185 0.52 +0.2 671,249 + A4249_RS03185 0.57 +0.5 671,249 + A4249_RS03185 0.57 +0.2 671,249 + A4249_RS03185 0.57 -1.5 671,250 - A4249_RS03185 0.57 +1.0 671,250 - A4249_RS03185 0.57 -1.1 671,250 - A4249_RS03185 0.57 -0.7 671,514 - A4249_RS03185 0.72 -0.6 671,630 + A4249_RS03185 0.78 -0.1 671,630 + A4249_RS03185 0.78 -0.2 671,631 - A4249_RS03185 0.78 -1.1 671,631 - A4249_RS03185 0.78 -0.1 671,631 - A4249_RS03185 0.78 -0.9 671,870 + +0.2 671,871 - +0.1 671,873 + -0.2 671,873 + -0.4 671,873 + -0.4 671,873 + -0.2 671,873 + -0.0 671,873 + +0.7 671,874 - +0.5 671,874 - -0.4 671,874 - +0.4 672,261 + A4249_RS03190 0.76 -2.3 672,262 - A4249_RS03190 0.76 -0.4 672,262 - A4249_RS03190 0.76 -0.8 672,444 - +0.5 672,474 + -1.1 672,474 + +0.2 672,474 + -0.1 672,475 - -0.0 672,475 - +0.2 672,475 - +0.2 672,475 - +0.1 672,475 - -0.1 672,549 + -0.2 672,549 + -0.4 672,549 + -1.0 672,550 - +1.1 672,550 - -0.9 672,550 - +0.7 673,216 + A4249_RS03205 0.19 -0.1 673,216 + A4249_RS03205 0.19 -0.2 673,216 + A4249_RS03205 0.19 +1.4 673,216 + A4249_RS03205 0.19 -0.7 673,216 + A4249_RS03205 0.19 +0.5 673,216 + A4249_RS03205 0.19 -0.2 673,217 - A4249_RS03205 0.19 +2.0 673,217 - A4249_RS03205 0.19 +0.9 673,217 - A4249_RS03205 0.19 -0.2 673,217 - A4249_RS03205 0.19 +0.8 673,217 - A4249_RS03205 0.19 +0.3 673,217 - A4249_RS03205 0.19 +1.6 673,217 - A4249_RS03205 0.19 +0.6 673,217 - A4249_RS03205 0.19 -0.5 673,217 - A4249_RS03205 0.19 -0.4 673,217 - A4249_RS03205 0.19 +0.4
Or see this region's nucleotide sequence