Experiment: Xanthine 0.6574 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS03005 and A4249_RS03010 are separated by 128 nucleotides A4249_RS03010 and A4249_RS03015 are separated by 72 nucleotides A4249_RS03015 and A4249_RS16490 are separated by 22 nucleotides
A4249_RS03005: A4249_RS03005 - glycosyltransferase family 4 protein, at 636,757 to 637,854
_RS03005
A4249_RS03010: A4249_RS03010 - peptidylprolyl isomerase, at 637,983 to 638,444
_RS03010
A4249_RS03015: A4249_RS03015 - RlmE family RNA methyltransferase, at 638,517 to 639,227
_RS03015
A4249_RS16490: A4249_RS16490 - hypothetical protein, at 639,250 to 639,627
_RS16490
Position (kb) 637
638
639 Strain fitness (log2 ratio) -2
-1
0
1 at 637.025 kb on + strand, within A4249_RS03005 at 637.026 kb on - strand, within A4249_RS03005 at 637.111 kb on + strand, within A4249_RS03005 at 637.111 kb on + strand, within A4249_RS03005 at 637.111 kb on + strand, within A4249_RS03005 at 637.111 kb on + strand, within A4249_RS03005 at 637.111 kb on + strand, within A4249_RS03005 at 637.112 kb on - strand, within A4249_RS03005 at 637.112 kb on - strand, within A4249_RS03005 at 637.517 kb on + strand, within A4249_RS03005 at 637.517 kb on + strand, within A4249_RS03005 at 637.518 kb on - strand, within A4249_RS03005 at 637.518 kb on - strand, within A4249_RS03005 at 637.943 kb on + strand at 637.944 kb on - strand at 638.089 kb on + strand, within A4249_RS03010 at 638.089 kb on + strand, within A4249_RS03010 at 638.089 kb on + strand, within A4249_RS03010 at 638.089 kb on + strand, within A4249_RS03010 at 638.090 kb on - strand, within A4249_RS03010 at 638.100 kb on + strand, within A4249_RS03010 at 638.101 kb on - strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.315 kb on - strand, within A4249_RS03010 at 638.315 kb on - strand, within A4249_RS03010 at 638.315 kb on - strand, within A4249_RS03010 at 638.315 kb on - strand, within A4249_RS03010 at 638.482 kb on + strand at 638.482 kb on + strand at 638.482 kb on + strand at 638.483 kb on - strand at 638.483 kb on - strand at 638.483 kb on - strand at 638.483 kb on - strand at 638.483 kb on - strand at 638.505 kb on + strand at 638.505 kb on + strand at 638.505 kb on + strand at 638.506 kb on - strand at 638.506 kb on - strand at 638.506 kb on - strand at 639.225 kb on + strand at 639.370 kb on + strand, within A4249_RS16490 at 639.370 kb on + strand, within A4249_RS16490 at 639.371 kb on - strand, within A4249_RS16490 at 639.425 kb on - strand, within A4249_RS16490
Per-strain Table
Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C) remove 637,025 + A4249_RS03005 0.24 -0.5 637,026 - A4249_RS03005 0.24 -1.1 637,111 + A4249_RS03005 0.32 +0.0 637,111 + A4249_RS03005 0.32 -0.4 637,111 + A4249_RS03005 0.32 -0.8 637,111 + A4249_RS03005 0.32 +1.6 637,111 + A4249_RS03005 0.32 -0.4 637,112 - A4249_RS03005 0.32 +0.9 637,112 - A4249_RS03005 0.32 +1.3 637,517 + A4249_RS03005 0.69 -1.0 637,517 + A4249_RS03005 0.69 +0.4 637,518 - A4249_RS03005 0.69 -0.1 637,518 - A4249_RS03005 0.69 -0.5 637,943 + -0.2 637,944 - +1.5 638,089 + A4249_RS03010 0.23 -0.6 638,089 + A4249_RS03010 0.23 +0.6 638,089 + A4249_RS03010 0.23 -0.0 638,089 + A4249_RS03010 0.23 -0.2 638,090 - A4249_RS03010 0.23 -0.7 638,100 + A4249_RS03010 0.25 -0.5 638,101 - A4249_RS03010 0.26 -0.0 638,314 + A4249_RS03010 0.72 -0.1 638,314 + A4249_RS03010 0.72 +0.8 638,314 + A4249_RS03010 0.72 -0.0 638,314 + A4249_RS03010 0.72 -1.0 638,314 + A4249_RS03010 0.72 -0.1 638,314 + A4249_RS03010 0.72 +0.9 638,314 + A4249_RS03010 0.72 +0.2 638,314 + A4249_RS03010 0.72 -0.8 638,314 + A4249_RS03010 0.72 +0.1 638,314 + A4249_RS03010 0.72 -0.1 638,314 + A4249_RS03010 0.72 -0.1 638,315 - A4249_RS03010 0.72 -0.3 638,315 - A4249_RS03010 0.72 -0.1 638,315 - A4249_RS03010 0.72 -0.4 638,315 - A4249_RS03010 0.72 -2.2 638,482 + +0.2 638,482 + -0.5 638,482 + -0.1 638,483 - +0.1 638,483 - -0.4 638,483 - +0.1 638,483 - -2.1 638,483 - -0.0 638,505 + +1.0 638,505 + +1.0 638,505 + +0.2 638,506 - +0.2 638,506 - +0.1 638,506 - -0.3 639,225 + +0.4 639,370 + A4249_RS16490 0.32 -0.6 639,370 + A4249_RS16490 0.32 +0.0 639,371 - A4249_RS16490 0.32 -0.5 639,425 - A4249_RS16490 0.46 +0.0
Or see this region's nucleotide sequence