Strain Fitness in Erwinia amylovora T8 around OLJFJH_04450

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04440 and OLJFJH_04445 are separated by 55 nucleotidesOLJFJH_04445 and OLJFJH_04450 are separated by 46 nucleotidesOLJFJH_04450 and OLJFJH_04455 are separated by 682 nucleotides OLJFJH_04440: OLJFJH_04440 - MurR/RpiR family transcriptional regulator, at 859,320 to 860,171 _04440 OLJFJH_04445: OLJFJH_04445 - 5-deoxy-glucuronate isomerase, at 860,227 to 861,060 _04445 OLJFJH_04450: OLJFJH_04450 - methylmalonate-semialdehyde dehydrogenase (CoA acylating), at 861,107 to 862,612 _04450 OLJFJH_04455: OLJFJH_04455 - pheromone autoinducer 2 transporter, at 863,295 to 864,332 _04455 Position (kb) 861 862 863Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 860.202 kb on - strandat 860.228 kb on + strandat 860.336 kb on + strand, within OLJFJH_04445at 860.337 kb on - strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.340 kb on - strand, within OLJFJH_04445at 860.340 kb on - strand, within OLJFJH_04445at 860.340 kb on - strand, within OLJFJH_04445at 860.343 kb on + strand, within OLJFJH_04445at 860.343 kb on + strand, within OLJFJH_04445at 860.343 kb on + strand, within OLJFJH_04445at 860.343 kb on + strand, within OLJFJH_04445at 860.344 kb on - strand, within OLJFJH_04445at 860.344 kb on - strand, within OLJFJH_04445at 860.344 kb on - strand, within OLJFJH_04445at 860.344 kb on - strand, within OLJFJH_04445at 860.386 kb on + strand, within OLJFJH_04445at 860.448 kb on - strand, within OLJFJH_04445at 860.492 kb on + strand, within OLJFJH_04445at 860.493 kb on - strand, within OLJFJH_04445at 860.495 kb on + strand, within OLJFJH_04445at 860.495 kb on + strand, within OLJFJH_04445at 860.495 kb on + strand, within OLJFJH_04445at 860.495 kb on + strand, within OLJFJH_04445at 860.495 kb on + strand, within OLJFJH_04445at 860.496 kb on - strand, within OLJFJH_04445at 860.496 kb on - strand, within OLJFJH_04445at 860.544 kb on + strand, within OLJFJH_04445at 860.544 kb on + strand, within OLJFJH_04445at 860.580 kb on + strand, within OLJFJH_04445at 860.582 kb on + strand, within OLJFJH_04445at 860.582 kb on + strand, within OLJFJH_04445at 860.582 kb on + strand, within OLJFJH_04445at 860.582 kb on + strand, within OLJFJH_04445at 860.583 kb on - strand, within OLJFJH_04445at 860.583 kb on - strand, within OLJFJH_04445at 860.711 kb on - strand, within OLJFJH_04445at 860.848 kb on - strand, within OLJFJH_04445at 860.860 kb on + strand, within OLJFJH_04445at 860.960 kb on + strand, within OLJFJH_04445at 860.960 kb on + strand, within OLJFJH_04445at 860.960 kb on + strand, within OLJFJH_04445at 860.979 kb on - strandat 861.004 kb on - strandat 861.004 kb on - strandat 861.004 kb on - strandat 861.006 kb on + strandat 861.006 kb on + strandat 861.006 kb on + strandat 861.006 kb on + strandat 861.007 kb on - strandat 861.007 kb on - strandat 861.007 kb on - strandat 861.047 kb on + strandat 861.047 kb on + strandat 861.048 kb on - strandat 861.048 kb on - strandat 861.052 kb on + strandat 861.088 kb on - strandat 861.190 kb on - strandat 861.513 kb on + strand, within OLJFJH_04450at 861.513 kb on + strand, within OLJFJH_04450at 861.513 kb on + strand, within OLJFJH_04450at 861.513 kb on + strand, within OLJFJH_04450at 861.513 kb on + strand, within OLJFJH_04450at 861.513 kb on + strand, within OLJFJH_04450at 861.513 kb on + strand, within OLJFJH_04450at 861.514 kb on - strand, within OLJFJH_04450at 861.514 kb on - strand, within OLJFJH_04450at 861.514 kb on - strand, within OLJFJH_04450at 861.514 kb on - strand, within OLJFJH_04450at 861.514 kb on - strand, within OLJFJH_04450at 861.514 kb on - strand, within OLJFJH_04450at 861.514 kb on - strand, within OLJFJH_04450at 861.516 kb on + strand, within OLJFJH_04450at 861.707 kb on + strand, within OLJFJH_04450at 861.707 kb on + strand, within OLJFJH_04450at 861.769 kb on + strand, within OLJFJH_04450at 861.769 kb on + strand, within OLJFJH_04450at 861.770 kb on - strand, within OLJFJH_04450at 861.770 kb on - strand, within OLJFJH_04450at 861.846 kb on - strand, within OLJFJH_04450at 861.846 kb on - strand, within OLJFJH_04450at 861.912 kb on + strand, within OLJFJH_04450at 861.912 kb on + strand, within OLJFJH_04450at 861.912 kb on + strand, within OLJFJH_04450at 861.913 kb on - strand, within OLJFJH_04450at 861.913 kb on - strand, within OLJFJH_04450at 861.913 kb on - strand, within OLJFJH_04450at 861.913 kb on - strand, within OLJFJH_04450at 861.916 kb on + strand, within OLJFJH_04450at 861.917 kb on - strand, within OLJFJH_04450at 861.917 kb on - strand, within OLJFJH_04450at 861.973 kb on + strand, within OLJFJH_04450at 861.973 kb on + strand, within OLJFJH_04450at 861.973 kb on + strand, within OLJFJH_04450at 861.974 kb on - strand, within OLJFJH_04450at 861.974 kb on - strand, within OLJFJH_04450at 861.974 kb on - strand, within OLJFJH_04450at 861.975 kb on + strand, within OLJFJH_04450at 861.975 kb on + strand, within OLJFJH_04450at 861.976 kb on - strand, within OLJFJH_04450at 861.976 kb on - strand, within OLJFJH_04450at 861.977 kb on + strand, within OLJFJH_04450at 861.977 kb on + strand, within OLJFJH_04450at 861.977 kb on + strand, within OLJFJH_04450at 861.977 kb on + strand, within OLJFJH_04450at 861.977 kb on + strand, within OLJFJH_04450at 861.977 kb on + strand, within OLJFJH_04450at 861.978 kb on - strand, within OLJFJH_04450at 861.978 kb on - strand, within OLJFJH_04450at 861.978 kb on - strand, within OLJFJH_04450at 861.978 kb on - strand, within OLJFJH_04450at 861.978 kb on - strand, within OLJFJH_04450at 861.978 kb on - strand, within OLJFJH_04450at 861.978 kb on - strand, within OLJFJH_04450at 862.142 kb on + strand, within OLJFJH_04450at 862.257 kb on - strand, within OLJFJH_04450at 862.270 kb on + strand, within OLJFJH_04450at 862.298 kb on - strand, within OLJFJH_04450at 862.472 kb on - strandat 862.474 kb on + strandat 862.474 kb on + strandat 862.607 kb on - strandat 862.673 kb on + strandat 862.707 kb on + strandat 862.708 kb on - strandat 863.146 kb on - strandat 863.330 kb on + strandat 863.405 kb on + strand, within OLJFJH_04455at 863.405 kb on + strand, within OLJFJH_04455at 863.406 kb on - strand, within OLJFJH_04455at 863.435 kb on + strand, within OLJFJH_04455at 863.459 kb on - strand, within OLJFJH_04455at 863.506 kb on + strand, within OLJFJH_04455

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-7
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860,202 - +0.2
860,228 + +0.3
860,336 + OLJFJH_04445 0.13 +4.4
860,337 - OLJFJH_04445 0.13 -0.2
860,339 + OLJFJH_04445 0.13 -0.3
860,339 + OLJFJH_04445 0.13 -0.9
860,339 + OLJFJH_04445 0.13 -1.1
860,339 + OLJFJH_04445 0.13 -0.5
860,339 + OLJFJH_04445 0.13 +1.0
860,339 + OLJFJH_04445 0.13 -0.7
860,339 + OLJFJH_04445 0.13 -1.1
860,339 + OLJFJH_04445 0.13 +0.0
860,339 + OLJFJH_04445 0.13 -1.3
860,340 - OLJFJH_04445 0.14 +3.2
860,340 - OLJFJH_04445 0.14 -0.6
860,340 - OLJFJH_04445 0.14 -0.5
860,343 + OLJFJH_04445 0.14 -0.0
860,343 + OLJFJH_04445 0.14 +1.3
860,343 + OLJFJH_04445 0.14 -0.3
860,343 + OLJFJH_04445 0.14 +0.1
860,344 - OLJFJH_04445 0.14 +1.3
860,344 - OLJFJH_04445 0.14 -0.1
860,344 - OLJFJH_04445 0.14 -0.1
860,344 - OLJFJH_04445 0.14 -2.0
860,386 + OLJFJH_04445 0.19 -0.6
860,448 - OLJFJH_04445 0.26 -1.0
860,492 + OLJFJH_04445 0.32 -0.5
860,493 - OLJFJH_04445 0.32 -0.3
860,495 + OLJFJH_04445 0.32 +0.3
860,495 + OLJFJH_04445 0.32 -1.1
860,495 + OLJFJH_04445 0.32 +0.4
860,495 + OLJFJH_04445 0.32 -1.1
860,495 + OLJFJH_04445 0.32 +0.2
860,496 - OLJFJH_04445 0.32 +0.1
860,496 - OLJFJH_04445 0.32 -0.2
860,544 + OLJFJH_04445 0.38 -0.3
860,544 + OLJFJH_04445 0.38 -0.4
860,580 + OLJFJH_04445 0.42 +0.7
860,582 + OLJFJH_04445 0.43 -0.5
860,582 + OLJFJH_04445 0.43 -1.8
860,582 + OLJFJH_04445 0.43 +0.4
860,582 + OLJFJH_04445 0.43 -2.0
860,583 - OLJFJH_04445 0.43 -0.3
860,583 - OLJFJH_04445 0.43 +0.3
860,711 - OLJFJH_04445 0.58 +0.4
860,848 - OLJFJH_04445 0.74 -1.0
860,860 + OLJFJH_04445 0.76 +0.5
860,960 + OLJFJH_04445 0.88 -0.1
860,960 + OLJFJH_04445 0.88 +0.5
860,960 + OLJFJH_04445 0.88 -1.7
860,979 - -0.6
861,004 - +1.4
861,004 - +0.5
861,004 - +1.4
861,006 + -1.3
861,006 + -0.5
861,006 + +4.1
861,006 + -0.9
861,007 - +0.4
861,007 - +0.3
861,007 - +1.3
861,047 + +1.4
861,047 + +0.5
861,048 - +0.5
861,048 - -0.0
861,052 + -1.0
861,088 - +0.2
861,190 - -0.5
861,513 + OLJFJH_04450 0.27 -0.2
861,513 + OLJFJH_04450 0.27 +0.3
861,513 + OLJFJH_04450 0.27 +0.2
861,513 + OLJFJH_04450 0.27 +0.7
861,513 + OLJFJH_04450 0.27 -0.4
861,513 + OLJFJH_04450 0.27 -0.1
861,513 + OLJFJH_04450 0.27 -0.2
861,514 - OLJFJH_04450 0.27 -1.2
861,514 - OLJFJH_04450 0.27 -0.2
861,514 - OLJFJH_04450 0.27 -0.7
861,514 - OLJFJH_04450 0.27 -0.5
861,514 - OLJFJH_04450 0.27 +1.9
861,514 - OLJFJH_04450 0.27 -0.3
861,514 - OLJFJH_04450 0.27 +0.5
861,516 + OLJFJH_04450 0.27 -0.3
861,707 + OLJFJH_04450 0.40 -1.2
861,707 + OLJFJH_04450 0.40 +1.5
861,769 + OLJFJH_04450 0.44 -0.3
861,769 + OLJFJH_04450 0.44 +1.4
861,770 - OLJFJH_04450 0.44 +0.1
861,770 - OLJFJH_04450 0.44 +0.3
861,846 - OLJFJH_04450 0.49 +0.3
861,846 - OLJFJH_04450 0.49 +0.0
861,912 + OLJFJH_04450 0.53 -1.6
861,912 + OLJFJH_04450 0.53 +0.8
861,912 + OLJFJH_04450 0.53 -1.5
861,913 - OLJFJH_04450 0.54 +0.7
861,913 - OLJFJH_04450 0.54 -0.6
861,913 - OLJFJH_04450 0.54 +0.3
861,913 - OLJFJH_04450 0.54 +0.6
861,916 + OLJFJH_04450 0.54 +1.2
861,917 - OLJFJH_04450 0.54 +0.4
861,917 - OLJFJH_04450 0.54 +1.0
861,973 + OLJFJH_04450 0.58 -0.2
861,973 + OLJFJH_04450 0.58 -0.0
861,973 + OLJFJH_04450 0.58 -0.4
861,974 - OLJFJH_04450 0.58 +1.5
861,974 - OLJFJH_04450 0.58 -0.2
861,974 - OLJFJH_04450 0.58 +0.0
861,975 + OLJFJH_04450 0.58 -0.3
861,975 + OLJFJH_04450 0.58 +1.0
861,976 - OLJFJH_04450 0.58 -0.2
861,976 - OLJFJH_04450 0.58 +0.7
861,977 + OLJFJH_04450 0.58 -0.1
861,977 + OLJFJH_04450 0.58 +0.3
861,977 + OLJFJH_04450 0.58 +0.8
861,977 + OLJFJH_04450 0.58 -0.8
861,977 + OLJFJH_04450 0.58 -0.1
861,977 + OLJFJH_04450 0.58 -0.7
861,978 - OLJFJH_04450 0.58 +0.1
861,978 - OLJFJH_04450 0.58 +0.7
861,978 - OLJFJH_04450 0.58 +0.3
861,978 - OLJFJH_04450 0.58 +0.5
861,978 - OLJFJH_04450 0.58 -0.5
861,978 - OLJFJH_04450 0.58 +2.4
861,978 - OLJFJH_04450 0.58 -0.5
862,142 + OLJFJH_04450 0.69 -0.5
862,257 - OLJFJH_04450 0.76 -0.1
862,270 + OLJFJH_04450 0.77 +0.7
862,298 - OLJFJH_04450 0.79 +0.2
862,472 - -0.3
862,474 + +1.3
862,474 + +0.8
862,607 - +1.1
862,673 + -0.0
862,707 + +0.5
862,708 - +0.1
863,146 - -1.2
863,330 + -0.2
863,405 + OLJFJH_04455 0.11 -0.6
863,405 + OLJFJH_04455 0.11 +0.1
863,406 - OLJFJH_04455 0.11 -1.2
863,435 + OLJFJH_04455 0.13 +0.3
863,459 - OLJFJH_04455 0.16 -0.2
863,506 + OLJFJH_04455 0.20 +0.0

Or see this region's nucleotide sequence