Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01890 and OLJFJH_01895 are separated by 17 nucleotides OLJFJH_01895 and OLJFJH_01900 are separated by 19 nucleotides OLJFJH_01900 and OLJFJH_01905 are separated by 24 nucleotides
OLJFJH_01890: OLJFJH_01890 - DotU family type VI secretion system protein, at 335,591 to 336,832
_01890
OLJFJH_01895: OLJFJH_01895 - type VI secretion system baseplate subunit TssK, at 336,850 to 338,193
_01895
OLJFJH_01900: OLJFJH_01900 - type VI secretion system lipoprotein TssJ, at 338,213 to 338,725
_01900
OLJFJH_01905: OLJFJH_01905 - SH3 domain-containing protein, at 338,750 to 339,250
_01905
Position (kb) 336
337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 336.120 kb on + strand, within OLJFJH_01890 at 336.120 kb on + strand, within OLJFJH_01890 at 336.120 kb on + strand, within OLJFJH_01890 at 336.145 kb on + strand, within OLJFJH_01890 at 336.145 kb on + strand, within OLJFJH_01890 at 336.146 kb on - strand, within OLJFJH_01890 at 336.146 kb on - strand, within OLJFJH_01890 at 336.147 kb on + strand, within OLJFJH_01890 at 336.148 kb on - strand, within OLJFJH_01890 at 336.148 kb on - strand, within OLJFJH_01890 at 336.166 kb on + strand, within OLJFJH_01890 at 336.167 kb on - strand, within OLJFJH_01890 at 336.167 kb on - strand, within OLJFJH_01890 at 336.177 kb on + strand, within OLJFJH_01890 at 336.177 kb on + strand, within OLJFJH_01890 at 336.177 kb on + strand, within OLJFJH_01890 at 336.177 kb on + strand, within OLJFJH_01890 at 336.177 kb on + strand, within OLJFJH_01890 at 336.177 kb on + strand, within OLJFJH_01890 at 336.178 kb on - strand, within OLJFJH_01890 at 336.178 kb on - strand, within OLJFJH_01890 at 336.503 kb on - strand, within OLJFJH_01890 at 336.503 kb on - strand, within OLJFJH_01890 at 336.560 kb on - strand, within OLJFJH_01890 at 336.586 kb on + strand, within OLJFJH_01890 at 336.772 kb on + strand at 336.772 kb on + strand at 336.773 kb on - strand at 336.986 kb on + strand, within OLJFJH_01895 at 337.038 kb on + strand, within OLJFJH_01895 at 337.038 kb on + strand, within OLJFJH_01895 at 337.038 kb on + strand, within OLJFJH_01895 at 337.489 kb on - strand, within OLJFJH_01895 at 337.513 kb on - strand, within OLJFJH_01895 at 337.531 kb on + strand, within OLJFJH_01895 at 337.590 kb on - strand, within OLJFJH_01895 at 337.620 kb on + strand, within OLJFJH_01895 at 337.620 kb on + strand, within OLJFJH_01895 at 337.637 kb on + strand, within OLJFJH_01895 at 337.637 kb on + strand, within OLJFJH_01895 at 337.637 kb on + strand, within OLJFJH_01895 at 337.637 kb on + strand, within OLJFJH_01895 at 337.637 kb on + strand, within OLJFJH_01895 at 337.638 kb on - strand, within OLJFJH_01895 at 337.638 kb on - strand, within OLJFJH_01895 at 337.683 kb on + strand, within OLJFJH_01895 at 337.747 kb on + strand, within OLJFJH_01895 at 337.897 kb on + strand, within OLJFJH_01895 at 337.972 kb on + strand, within OLJFJH_01895 at 337.973 kb on - strand, within OLJFJH_01895 at 338.174 kb on - strand at 338.342 kb on - strand, within OLJFJH_01900 at 338.515 kb on - strand, within OLJFJH_01900 at 338.532 kb on - strand, within OLJFJH_01900 at 338.620 kb on - strand, within OLJFJH_01900 at 338.871 kb on - strand, within OLJFJH_01905 at 338.919 kb on + strand, within OLJFJH_01905 at 338.919 kb on + strand, within OLJFJH_01905 at 338.919 kb on + strand, within OLJFJH_01905 at 338.920 kb on - strand, within OLJFJH_01905 at 338.920 kb on - strand, within OLJFJH_01905 at 339.064 kb on - strand, within OLJFJH_01905 at 339.095 kb on - strand, within OLJFJH_01905 at 339.116 kb on - strand, within OLJFJH_01905
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-7 remove 336,120 + OLJFJH_01890 0.43 -2.3 336,120 + OLJFJH_01890 0.43 -2.7 336,120 + OLJFJH_01890 0.43 -2.3 336,145 + OLJFJH_01890 0.45 -2.5 336,145 + OLJFJH_01890 0.45 -3.1 336,146 - OLJFJH_01890 0.45 +0.5 336,146 - OLJFJH_01890 0.45 -1.0 336,147 + OLJFJH_01890 0.45 -2.7 336,148 - OLJFJH_01890 0.45 -0.7 336,148 - OLJFJH_01890 0.45 +0.2 336,166 + OLJFJH_01890 0.46 -2.3 336,167 - OLJFJH_01890 0.46 -1.4 336,167 - OLJFJH_01890 0.46 +0.8 336,177 + OLJFJH_01890 0.47 -2.0 336,177 + OLJFJH_01890 0.47 -2.3 336,177 + OLJFJH_01890 0.47 -2.1 336,177 + OLJFJH_01890 0.47 -2.0 336,177 + OLJFJH_01890 0.47 -0.8 336,177 + OLJFJH_01890 0.47 -3.7 336,178 - OLJFJH_01890 0.47 +0.4 336,178 - OLJFJH_01890 0.47 +0.3 336,503 - OLJFJH_01890 0.73 -0.2 336,503 - OLJFJH_01890 0.73 -0.8 336,560 - OLJFJH_01890 0.78 +0.3 336,586 + OLJFJH_01890 0.80 -1.7 336,772 + -3.7 336,772 + -0.8 336,773 - -0.5 336,986 + OLJFJH_01895 0.10 -2.5 337,038 + OLJFJH_01895 0.14 -2.2 337,038 + OLJFJH_01895 0.14 -2.6 337,038 + OLJFJH_01895 0.14 -1.5 337,489 - OLJFJH_01895 0.48 -0.8 337,513 - OLJFJH_01895 0.49 -0.9 337,531 + OLJFJH_01895 0.51 -3.2 337,590 - OLJFJH_01895 0.55 -1.9 337,620 + OLJFJH_01895 0.57 -1.9 337,620 + OLJFJH_01895 0.57 -1.9 337,637 + OLJFJH_01895 0.59 -2.2 337,637 + OLJFJH_01895 0.59 -1.6 337,637 + OLJFJH_01895 0.59 -2.7 337,637 + OLJFJH_01895 0.59 -2.8 337,637 + OLJFJH_01895 0.59 -2.6 337,638 - OLJFJH_01895 0.59 +0.2 337,638 - OLJFJH_01895 0.59 +0.4 337,683 + OLJFJH_01895 0.62 -3.0 337,747 + OLJFJH_01895 0.67 -1.7 337,897 + OLJFJH_01895 0.78 -2.2 337,972 + OLJFJH_01895 0.83 -2.4 337,973 - OLJFJH_01895 0.84 -2.7 338,174 - -0.2 338,342 - OLJFJH_01900 0.25 +0.3 338,515 - OLJFJH_01900 0.59 -0.2 338,532 - OLJFJH_01900 0.62 -1.3 338,620 - OLJFJH_01900 0.79 +0.5 338,871 - OLJFJH_01905 0.24 -0.4 338,919 + OLJFJH_01905 0.34 -2.8 338,919 + OLJFJH_01905 0.34 -1.3 338,919 + OLJFJH_01905 0.34 -2.7 338,920 - OLJFJH_01905 0.34 -0.0 338,920 - OLJFJH_01905 0.34 +1.6 339,064 - OLJFJH_01905 0.63 +0.4 339,095 - OLJFJH_01905 0.69 +4.7 339,116 - OLJFJH_01905 0.73 +6.3
Or see this region's nucleotide sequence