Strain Fitness in Erwinia amylovora T8 around OLJFJH_01890

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01885 and OLJFJH_01890 are separated by 3 nucleotidesOLJFJH_01890 and OLJFJH_01895 are separated by 17 nucleotides OLJFJH_01885: OLJFJH_01885 - type VI secretion system membrane subunit TssM, at 331,955 to 335,587 _01885 OLJFJH_01890: OLJFJH_01890 - DotU family type VI secretion system protein, at 335,591 to 336,832 _01890 OLJFJH_01895: OLJFJH_01895 - type VI secretion system baseplate subunit TssK, at 336,850 to 338,193 _01895 Position (kb) 335 336 337Strain fitness (log2 ratio) -3 -2 -1 0 1at 334.710 kb on + strand, within OLJFJH_01885at 334.711 kb on - strand, within OLJFJH_01885at 334.755 kb on + strand, within OLJFJH_01885at 334.756 kb on - strand, within OLJFJH_01885at 334.756 kb on - strand, within OLJFJH_01885at 334.908 kb on + strand, within OLJFJH_01885at 334.912 kb on + strand, within OLJFJH_01885at 334.912 kb on + strand, within OLJFJH_01885at 334.912 kb on + strand, within OLJFJH_01885at 334.913 kb on - strand, within OLJFJH_01885at 334.927 kb on + strand, within OLJFJH_01885at 334.927 kb on + strand, within OLJFJH_01885at 334.927 kb on + strand, within OLJFJH_01885at 334.928 kb on - strand, within OLJFJH_01885at 335.154 kb on + strand, within OLJFJH_01885at 335.154 kb on + strand, within OLJFJH_01885at 335.154 kb on + strand, within OLJFJH_01885at 335.155 kb on - strand, within OLJFJH_01885at 335.155 kb on - strand, within OLJFJH_01885at 335.155 kb on - strand, within OLJFJH_01885at 335.169 kb on + strand, within OLJFJH_01885at 335.175 kb on + strand, within OLJFJH_01885at 335.176 kb on - strand, within OLJFJH_01885at 335.383 kb on - strandat 335.489 kb on + strandat 335.489 kb on + strandat 335.513 kb on - strandat 335.578 kb on + strandat 335.578 kb on + strandat 335.579 kb on - strandat 335.579 kb on - strandat 335.755 kb on + strand, within OLJFJH_01890at 335.755 kb on + strand, within OLJFJH_01890at 335.755 kb on + strand, within OLJFJH_01890at 335.756 kb on - strand, within OLJFJH_01890at 335.804 kb on + strand, within OLJFJH_01890at 335.804 kb on + strand, within OLJFJH_01890at 335.804 kb on + strand, within OLJFJH_01890at 335.804 kb on + strand, within OLJFJH_01890at 335.804 kb on + strand, within OLJFJH_01890at 335.805 kb on - strand, within OLJFJH_01890at 335.805 kb on - strand, within OLJFJH_01890at 335.812 kb on - strand, within OLJFJH_01890at 336.120 kb on + strand, within OLJFJH_01890at 336.120 kb on + strand, within OLJFJH_01890at 336.120 kb on + strand, within OLJFJH_01890at 336.145 kb on + strand, within OLJFJH_01890at 336.145 kb on + strand, within OLJFJH_01890at 336.146 kb on - strand, within OLJFJH_01890at 336.146 kb on - strand, within OLJFJH_01890at 336.147 kb on + strand, within OLJFJH_01890at 336.148 kb on - strand, within OLJFJH_01890at 336.148 kb on - strand, within OLJFJH_01890at 336.166 kb on + strand, within OLJFJH_01890at 336.167 kb on - strand, within OLJFJH_01890at 336.167 kb on - strand, within OLJFJH_01890at 336.177 kb on + strand, within OLJFJH_01890at 336.177 kb on + strand, within OLJFJH_01890at 336.177 kb on + strand, within OLJFJH_01890at 336.177 kb on + strand, within OLJFJH_01890at 336.177 kb on + strand, within OLJFJH_01890at 336.177 kb on + strand, within OLJFJH_01890at 336.178 kb on - strand, within OLJFJH_01890at 336.178 kb on - strand, within OLJFJH_01890at 336.503 kb on - strand, within OLJFJH_01890at 336.503 kb on - strand, within OLJFJH_01890at 336.560 kb on - strand, within OLJFJH_01890at 336.586 kb on + strand, within OLJFJH_01890at 336.772 kb on + strandat 336.772 kb on + strandat 336.773 kb on - strandat 336.986 kb on + strand, within OLJFJH_01895at 337.038 kb on + strand, within OLJFJH_01895at 337.038 kb on + strand, within OLJFJH_01895at 337.038 kb on + strand, within OLJFJH_01895at 337.489 kb on - strand, within OLJFJH_01895at 337.513 kb on - strand, within OLJFJH_01895at 337.531 kb on + strand, within OLJFJH_01895at 337.590 kb on - strand, within OLJFJH_01895at 337.620 kb on + strand, within OLJFJH_01895at 337.620 kb on + strand, within OLJFJH_01895at 337.637 kb on + strand, within OLJFJH_01895at 337.637 kb on + strand, within OLJFJH_01895at 337.637 kb on + strand, within OLJFJH_01895at 337.637 kb on + strand, within OLJFJH_01895at 337.637 kb on + strand, within OLJFJH_01895at 337.638 kb on - strand, within OLJFJH_01895at 337.638 kb on - strand, within OLJFJH_01895at 337.683 kb on + strand, within OLJFJH_01895at 337.747 kb on + strand, within OLJFJH_01895

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-7
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334,710 + OLJFJH_01885 0.76 -2.1
334,711 - OLJFJH_01885 0.76 -0.8
334,755 + OLJFJH_01885 0.77 -2.8
334,756 - OLJFJH_01885 0.77 +0.6
334,756 - OLJFJH_01885 0.77 -0.8
334,908 + OLJFJH_01885 0.81 -2.2
334,912 + OLJFJH_01885 0.81 -1.4
334,912 + OLJFJH_01885 0.81 -2.6
334,912 + OLJFJH_01885 0.81 -3.0
334,913 - OLJFJH_01885 0.81 +0.6
334,927 + OLJFJH_01885 0.82 -1.7
334,927 + OLJFJH_01885 0.82 -2.4
334,927 + OLJFJH_01885 0.82 -3.6
334,928 - OLJFJH_01885 0.82 +0.0
335,154 + OLJFJH_01885 0.88 -2.5
335,154 + OLJFJH_01885 0.88 -1.0
335,154 + OLJFJH_01885 0.88 -2.2
335,155 - OLJFJH_01885 0.88 +0.7
335,155 - OLJFJH_01885 0.88 +0.4
335,155 - OLJFJH_01885 0.88 -0.5
335,169 + OLJFJH_01885 0.88 -2.1
335,175 + OLJFJH_01885 0.89 -0.4
335,176 - OLJFJH_01885 0.89 +0.1
335,383 - +0.3
335,489 + -1.9
335,489 + -2.7
335,513 - -0.3
335,578 + -2.3
335,578 + -0.7
335,579 - -0.4
335,579 - +0.7
335,755 + OLJFJH_01890 0.13 -2.4
335,755 + OLJFJH_01890 0.13 -2.3
335,755 + OLJFJH_01890 0.13 -0.1
335,756 - OLJFJH_01890 0.13 -1.0
335,804 + OLJFJH_01890 0.17 -1.6
335,804 + OLJFJH_01890 0.17 -0.9
335,804 + OLJFJH_01890 0.17 -1.9
335,804 + OLJFJH_01890 0.17 -1.1
335,804 + OLJFJH_01890 0.17 -1.5
335,805 - OLJFJH_01890 0.17 +0.3
335,805 - OLJFJH_01890 0.17 -0.7
335,812 - OLJFJH_01890 0.18 +0.0
336,120 + OLJFJH_01890 0.43 -2.3
336,120 + OLJFJH_01890 0.43 -2.7
336,120 + OLJFJH_01890 0.43 -2.3
336,145 + OLJFJH_01890 0.45 -2.5
336,145 + OLJFJH_01890 0.45 -3.1
336,146 - OLJFJH_01890 0.45 +0.5
336,146 - OLJFJH_01890 0.45 -1.0
336,147 + OLJFJH_01890 0.45 -2.7
336,148 - OLJFJH_01890 0.45 -0.7
336,148 - OLJFJH_01890 0.45 +0.2
336,166 + OLJFJH_01890 0.46 -2.3
336,167 - OLJFJH_01890 0.46 -1.4
336,167 - OLJFJH_01890 0.46 +0.8
336,177 + OLJFJH_01890 0.47 -2.0
336,177 + OLJFJH_01890 0.47 -2.3
336,177 + OLJFJH_01890 0.47 -2.1
336,177 + OLJFJH_01890 0.47 -2.0
336,177 + OLJFJH_01890 0.47 -0.8
336,177 + OLJFJH_01890 0.47 -3.7
336,178 - OLJFJH_01890 0.47 +0.4
336,178 - OLJFJH_01890 0.47 +0.3
336,503 - OLJFJH_01890 0.73 -0.2
336,503 - OLJFJH_01890 0.73 -0.8
336,560 - OLJFJH_01890 0.78 +0.3
336,586 + OLJFJH_01890 0.80 -1.7
336,772 + -3.7
336,772 + -0.8
336,773 - -0.5
336,986 + OLJFJH_01895 0.10 -2.5
337,038 + OLJFJH_01895 0.14 -2.2
337,038 + OLJFJH_01895 0.14 -2.6
337,038 + OLJFJH_01895 0.14 -1.5
337,489 - OLJFJH_01895 0.48 -0.8
337,513 - OLJFJH_01895 0.49 -0.9
337,531 + OLJFJH_01895 0.51 -3.2
337,590 - OLJFJH_01895 0.55 -1.9
337,620 + OLJFJH_01895 0.57 -1.9
337,620 + OLJFJH_01895 0.57 -1.9
337,637 + OLJFJH_01895 0.59 -2.2
337,637 + OLJFJH_01895 0.59 -1.6
337,637 + OLJFJH_01895 0.59 -2.7
337,637 + OLJFJH_01895 0.59 -2.8
337,637 + OLJFJH_01895 0.59 -2.6
337,638 - OLJFJH_01895 0.59 +0.2
337,638 - OLJFJH_01895 0.59 +0.4
337,683 + OLJFJH_01895 0.62 -3.0
337,747 + OLJFJH_01895 0.67 -1.7

Or see this region's nucleotide sequence