Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01875 and OLJFJH_01880 are separated by 17 nucleotides OLJFJH_01880 and OLJFJH_01885 are separated by 16 nucleotides
OLJFJH_01875: OLJFJH_01875 - type VI secretion system protein TssA, at 330,191 to 331,210
_01875
OLJFJH_01880: OLJFJH_01880 - Regulator of T6SS expression TagF TagF/ImpM/SciT family (unrelated to teichoic acid polymerase TagF of B-subtilis COG1887), at 331,228 to 331,938
_01880
OLJFJH_01885: OLJFJH_01885 - type VI secretion system membrane subunit TssM, at 331,955 to 335,587
_01885
Position (kb) 331
332 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 330.346 kb on - strand, within OLJFJH_01875 at 330.346 kb on - strand, within OLJFJH_01875 at 330.398 kb on + strand, within OLJFJH_01875 at 330.841 kb on + strand, within OLJFJH_01875 at 330.842 kb on - strand, within OLJFJH_01875 at 330.926 kb on - strand, within OLJFJH_01875 at 331.134 kb on + strand at 331.134 kb on + strand at 331.135 kb on - strand at 331.135 kb on - strand at 331.135 kb on - strand at 331.299 kb on + strand, within OLJFJH_01880 at 331.340 kb on + strand, within OLJFJH_01880 at 331.385 kb on + strand, within OLJFJH_01880 at 331.385 kb on + strand, within OLJFJH_01880 at 331.385 kb on + strand, within OLJFJH_01880 at 331.386 kb on - strand, within OLJFJH_01880 at 331.853 kb on + strand, within OLJFJH_01880 at 331.853 kb on + strand, within OLJFJH_01880 at 331.853 kb on + strand, within OLJFJH_01880 at 331.853 kb on + strand, within OLJFJH_01880 at 331.854 kb on - strand, within OLJFJH_01880 at 331.854 kb on - strand, within OLJFJH_01880 at 332.144 kb on - strand at 332.238 kb on + strand at 332.246 kb on + strand at 332.246 kb on + strand at 332.390 kb on + strand, within OLJFJH_01885 at 332.390 kb on + strand, within OLJFJH_01885 at 332.390 kb on + strand, within OLJFJH_01885 at 332.390 kb on + strand, within OLJFJH_01885 at 332.391 kb on - strand, within OLJFJH_01885 at 332.391 kb on - strand, within OLJFJH_01885 at 332.391 kb on - strand, within OLJFJH_01885 at 332.391 kb on - strand, within OLJFJH_01885 at 332.391 kb on - strand, within OLJFJH_01885 at 332.391 kb on - strand, within OLJFJH_01885 at 332.391 kb on - strand, within OLJFJH_01885 at 332.391 kb on - strand, within OLJFJH_01885 at 332.431 kb on + strand, within OLJFJH_01885 at 332.521 kb on + strand, within OLJFJH_01885 at 332.521 kb on + strand, within OLJFJH_01885 at 332.521 kb on + strand, within OLJFJH_01885 at 332.521 kb on + strand, within OLJFJH_01885 at 332.521 kb on + strand, within OLJFJH_01885 at 332.521 kb on + strand, within OLJFJH_01885 at 332.521 kb on + strand, within OLJFJH_01885 at 332.521 kb on + strand, within OLJFJH_01885 at 332.521 kb on + strand, within OLJFJH_01885 at 332.522 kb on - strand, within OLJFJH_01885 at 332.522 kb on - strand, within OLJFJH_01885 at 332.522 kb on - strand, within OLJFJH_01885 at 332.522 kb on - strand, within OLJFJH_01885
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-7 remove 330,346 - OLJFJH_01875 0.15 +0.6 330,346 - OLJFJH_01875 0.15 +1.1 330,398 + OLJFJH_01875 0.20 -1.8 330,841 + OLJFJH_01875 0.64 -1.3 330,842 - OLJFJH_01875 0.64 -0.3 330,926 - OLJFJH_01875 0.72 -0.7 331,134 + -2.4 331,134 + -1.5 331,135 - +0.0 331,135 - +0.5 331,135 - -0.3 331,299 + OLJFJH_01880 0.10 -1.1 331,340 + OLJFJH_01880 0.16 -1.4 331,385 + OLJFJH_01880 0.22 -1.2 331,385 + OLJFJH_01880 0.22 -1.3 331,385 + OLJFJH_01880 0.22 -1.4 331,386 - OLJFJH_01880 0.22 -1.1 331,853 + OLJFJH_01880 0.88 +0.2 331,853 + OLJFJH_01880 0.88 -1.8 331,853 + OLJFJH_01880 0.88 -1.6 331,853 + OLJFJH_01880 0.88 -1.3 331,854 - OLJFJH_01880 0.88 -1.0 331,854 - OLJFJH_01880 0.88 -0.2 332,144 - -0.1 332,238 + -2.0 332,246 + -0.2 332,246 + -1.0 332,390 + OLJFJH_01885 0.12 -1.9 332,390 + OLJFJH_01885 0.12 -2.2 332,390 + OLJFJH_01885 0.12 -2.8 332,390 + OLJFJH_01885 0.12 -2.9 332,391 - OLJFJH_01885 0.12 +0.8 332,391 - OLJFJH_01885 0.12 +5.7 332,391 - OLJFJH_01885 0.12 +0.5 332,391 - OLJFJH_01885 0.12 -0.2 332,391 - OLJFJH_01885 0.12 +2.7 332,391 - OLJFJH_01885 0.12 -0.2 332,391 - OLJFJH_01885 0.12 -0.5 332,391 - OLJFJH_01885 0.12 -0.1 332,431 + OLJFJH_01885 0.13 -0.4 332,521 + OLJFJH_01885 0.16 -2.2 332,521 + OLJFJH_01885 0.16 -0.3 332,521 + OLJFJH_01885 0.16 -2.5 332,521 + OLJFJH_01885 0.16 -1.5 332,521 + OLJFJH_01885 0.16 -2.2 332,521 + OLJFJH_01885 0.16 -2.8 332,521 + OLJFJH_01885 0.16 -1.4 332,521 + OLJFJH_01885 0.16 -1.7 332,521 + OLJFJH_01885 0.16 -1.6 332,522 - OLJFJH_01885 0.16 -0.4 332,522 - OLJFJH_01885 0.16 -0.9 332,522 - OLJFJH_01885 0.16 -0.8 332,522 - OLJFJH_01885 0.16 +0.6
Or see this region's nucleotide sequence