Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01865 and OLJFJH_01870 are separated by 3 nucleotides OLJFJH_01870 and OLJFJH_01875 are separated by 62 nucleotides
OLJFJH_01865: OLJFJH_01865 - type VI secretion system contractile sheath large subunit, at 328,089 to 329,588
_01865
OLJFJH_01870: OLJFJH_01870 - Type VI secretion system core protein, at 329,592 to 330,128
_01870
OLJFJH_01875: OLJFJH_01875 - type VI secretion system protein TssA, at 330,191 to 331,210
_01875
Position (kb) 329
330
331 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 328.608 kb on - strand, within OLJFJH_01865 at 328.691 kb on + strand, within OLJFJH_01865 at 328.692 kb on - strand, within OLJFJH_01865 at 328.724 kb on + strand, within OLJFJH_01865 at 328.762 kb on + strand, within OLJFJH_01865 at 328.762 kb on + strand, within OLJFJH_01865 at 328.762 kb on + strand, within OLJFJH_01865 at 328.763 kb on - strand, within OLJFJH_01865 at 328.763 kb on - strand, within OLJFJH_01865 at 328.763 kb on - strand, within OLJFJH_01865 at 329.089 kb on + strand, within OLJFJH_01865 at 329.089 kb on + strand, within OLJFJH_01865 at 329.092 kb on + strand, within OLJFJH_01865 at 329.092 kb on + strand, within OLJFJH_01865 at 329.092 kb on + strand, within OLJFJH_01865 at 329.137 kb on + strand, within OLJFJH_01865 at 329.150 kb on - strand, within OLJFJH_01865 at 329.150 kb on - strand, within OLJFJH_01865 at 329.150 kb on - strand, within OLJFJH_01865 at 329.150 kb on - strand, within OLJFJH_01865 at 329.226 kb on - strand, within OLJFJH_01865 at 329.238 kb on - strand, within OLJFJH_01865 at 329.284 kb on + strand, within OLJFJH_01865 at 329.285 kb on - strand, within OLJFJH_01865 at 329.426 kb on + strand, within OLJFJH_01865 at 329.593 kb on + strand at 329.648 kb on + strand, within OLJFJH_01870 at 329.649 kb on - strand, within OLJFJH_01870 at 329.722 kb on + strand, within OLJFJH_01870 at 329.722 kb on + strand, within OLJFJH_01870 at 329.722 kb on + strand, within OLJFJH_01870 at 329.722 kb on + strand, within OLJFJH_01870 at 329.722 kb on + strand, within OLJFJH_01870 at 329.722 kb on + strand, within OLJFJH_01870 at 329.723 kb on - strand, within OLJFJH_01870 at 329.945 kb on + strand, within OLJFJH_01870 at 329.945 kb on + strand, within OLJFJH_01870 at 329.945 kb on + strand, within OLJFJH_01870 at 329.945 kb on + strand, within OLJFJH_01870 at 329.945 kb on + strand, within OLJFJH_01870 at 329.946 kb on - strand, within OLJFJH_01870 at 329.946 kb on - strand, within OLJFJH_01870 at 329.946 kb on - strand, within OLJFJH_01870 at 330.059 kb on - strand, within OLJFJH_01870 at 330.154 kb on + strand at 330.160 kb on + strand at 330.170 kb on + strand at 330.192 kb on + strand at 330.193 kb on - strand at 330.346 kb on - strand, within OLJFJH_01875 at 330.346 kb on - strand, within OLJFJH_01875 at 330.398 kb on + strand, within OLJFJH_01875 at 330.841 kb on + strand, within OLJFJH_01875 at 330.842 kb on - strand, within OLJFJH_01875 at 330.926 kb on - strand, within OLJFJH_01875
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-7 remove 328,608 - OLJFJH_01865 0.35 -0.0 328,691 + OLJFJH_01865 0.40 -2.6 328,692 - OLJFJH_01865 0.40 -0.6 328,724 + OLJFJH_01865 0.42 -2.7 328,762 + OLJFJH_01865 0.45 -3.0 328,762 + OLJFJH_01865 0.45 -3.1 328,762 + OLJFJH_01865 0.45 -2.7 328,763 - OLJFJH_01865 0.45 -0.4 328,763 - OLJFJH_01865 0.45 +0.2 328,763 - OLJFJH_01865 0.45 -0.2 329,089 + OLJFJH_01865 0.67 -1.6 329,089 + OLJFJH_01865 0.67 -1.8 329,092 + OLJFJH_01865 0.67 -1.4 329,092 + OLJFJH_01865 0.67 -2.2 329,092 + OLJFJH_01865 0.67 -1.4 329,137 + OLJFJH_01865 0.70 -2.6 329,150 - OLJFJH_01865 0.71 +0.8 329,150 - OLJFJH_01865 0.71 -1.0 329,150 - OLJFJH_01865 0.71 +0.1 329,150 - OLJFJH_01865 0.71 -0.4 329,226 - OLJFJH_01865 0.76 +0.9 329,238 - OLJFJH_01865 0.77 -0.3 329,284 + OLJFJH_01865 0.80 -3.0 329,285 - OLJFJH_01865 0.80 -0.1 329,426 + OLJFJH_01865 0.89 -2.2 329,593 + -1.0 329,648 + OLJFJH_01870 0.10 -2.4 329,649 - OLJFJH_01870 0.11 +4.2 329,722 + OLJFJH_01870 0.24 -1.4 329,722 + OLJFJH_01870 0.24 -2.7 329,722 + OLJFJH_01870 0.24 -1.0 329,722 + OLJFJH_01870 0.24 -3.4 329,722 + OLJFJH_01870 0.24 -1.0 329,722 + OLJFJH_01870 0.24 -2.6 329,723 - OLJFJH_01870 0.24 -0.4 329,945 + OLJFJH_01870 0.66 -2.0 329,945 + OLJFJH_01870 0.66 -3.7 329,945 + OLJFJH_01870 0.66 -2.4 329,945 + OLJFJH_01870 0.66 -3.6 329,945 + OLJFJH_01870 0.66 -1.9 329,946 - OLJFJH_01870 0.66 -0.0 329,946 - OLJFJH_01870 0.66 +0.8 329,946 - OLJFJH_01870 0.66 -0.8 330,059 - OLJFJH_01870 0.87 +0.2 330,154 + -1.8 330,160 + -3.0 330,170 + -0.8 330,192 + -1.3 330,193 - -0.7 330,346 - OLJFJH_01875 0.15 +0.6 330,346 - OLJFJH_01875 0.15 +1.1 330,398 + OLJFJH_01875 0.20 -1.8 330,841 + OLJFJH_01875 0.64 -1.3 330,842 - OLJFJH_01875 0.64 -0.3 330,926 - OLJFJH_01875 0.72 -0.7
Or see this region's nucleotide sequence