Strain Fitness in Erwinia amylovora T8 around OLJFJH_01865

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_01850 and OLJFJH_01855 are separated by 78 nucleotidesOLJFJH_01855 and OLJFJH_01860 are separated by 104 nucleotidesOLJFJH_01860 and OLJFJH_01865 are separated by 68 nucleotidesOLJFJH_01865 and OLJFJH_01870 are separated by 3 nucleotidesOLJFJH_01870 and OLJFJH_01875 are separated by 62 nucleotides OLJFJH_01850: OLJFJH_01850 - Putative cytoplasmic protein, at 326,771 to 327,250 _01850 OLJFJH_01855: OLJFJH_01855 - type VI secretion system tube protein Hcp, at 327,329 to 327,811 _01855 OLJFJH_01860: OLJFJH_01860 - hypothetical protein, at 327,916 to 328,020 _01860 OLJFJH_01865: OLJFJH_01865 - type VI secretion system contractile sheath large subunit, at 328,089 to 329,588 _01865 OLJFJH_01870: OLJFJH_01870 - Type VI secretion system core protein, at 329,592 to 330,128 _01870 OLJFJH_01875: OLJFJH_01875 - type VI secretion system protein TssA, at 330,191 to 331,210 _01875 Position (kb) 328 329 330Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 327.442 kb on - strand, within OLJFJH_01855at 327.515 kb on - strand, within OLJFJH_01855at 327.517 kb on + strand, within OLJFJH_01855at 327.517 kb on + strand, within OLJFJH_01855at 327.518 kb on - strand, within OLJFJH_01855at 327.550 kb on + strand, within OLJFJH_01855at 327.566 kb on + strand, within OLJFJH_01855at 327.567 kb on - strand, within OLJFJH_01855at 327.576 kb on - strand, within OLJFJH_01855at 327.576 kb on - strand, within OLJFJH_01855at 327.576 kb on - strand, within OLJFJH_01855at 327.623 kb on - strand, within OLJFJH_01855at 327.694 kb on + strand, within OLJFJH_01855at 327.763 kb on + strandat 327.795 kb on + strandat 327.796 kb on - strandat 327.796 kb on - strandat 327.800 kb on - strandat 327.819 kb on + strandat 327.820 kb on - strandat 327.829 kb on - strandat 327.833 kb on - strandat 327.881 kb on + strandat 327.899 kb on + strandat 327.922 kb on - strandat 327.933 kb on - strand, within OLJFJH_01860at 327.937 kb on - strand, within OLJFJH_01860at 328.060 kb on - strandat 328.070 kb on + strandat 328.071 kb on - strandat 328.075 kb on - strandat 328.162 kb on + strandat 328.192 kb on + strandat 328.192 kb on + strandat 328.297 kb on + strand, within OLJFJH_01865at 328.297 kb on + strand, within OLJFJH_01865at 328.297 kb on + strand, within OLJFJH_01865at 328.297 kb on + strand, within OLJFJH_01865at 328.297 kb on + strand, within OLJFJH_01865at 328.297 kb on + strand, within OLJFJH_01865at 328.298 kb on - strand, within OLJFJH_01865at 328.384 kb on + strand, within OLJFJH_01865at 328.414 kb on + strand, within OLJFJH_01865at 328.542 kb on - strand, within OLJFJH_01865at 328.608 kb on - strand, within OLJFJH_01865at 328.691 kb on + strand, within OLJFJH_01865at 328.692 kb on - strand, within OLJFJH_01865at 328.724 kb on + strand, within OLJFJH_01865at 328.762 kb on + strand, within OLJFJH_01865at 328.762 kb on + strand, within OLJFJH_01865at 328.762 kb on + strand, within OLJFJH_01865at 328.763 kb on - strand, within OLJFJH_01865at 328.763 kb on - strand, within OLJFJH_01865at 328.763 kb on - strand, within OLJFJH_01865at 329.089 kb on + strand, within OLJFJH_01865at 329.089 kb on + strand, within OLJFJH_01865at 329.092 kb on + strand, within OLJFJH_01865at 329.092 kb on + strand, within OLJFJH_01865at 329.092 kb on + strand, within OLJFJH_01865at 329.137 kb on + strand, within OLJFJH_01865at 329.150 kb on - strand, within OLJFJH_01865at 329.150 kb on - strand, within OLJFJH_01865at 329.150 kb on - strand, within OLJFJH_01865at 329.150 kb on - strand, within OLJFJH_01865at 329.226 kb on - strand, within OLJFJH_01865at 329.238 kb on - strand, within OLJFJH_01865at 329.284 kb on + strand, within OLJFJH_01865at 329.285 kb on - strand, within OLJFJH_01865at 329.426 kb on + strand, within OLJFJH_01865at 329.593 kb on + strandat 329.648 kb on + strand, within OLJFJH_01870at 329.649 kb on - strand, within OLJFJH_01870at 329.722 kb on + strand, within OLJFJH_01870at 329.722 kb on + strand, within OLJFJH_01870at 329.722 kb on + strand, within OLJFJH_01870at 329.722 kb on + strand, within OLJFJH_01870at 329.722 kb on + strand, within OLJFJH_01870at 329.722 kb on + strand, within OLJFJH_01870at 329.723 kb on - strand, within OLJFJH_01870at 329.945 kb on + strand, within OLJFJH_01870at 329.945 kb on + strand, within OLJFJH_01870at 329.945 kb on + strand, within OLJFJH_01870at 329.945 kb on + strand, within OLJFJH_01870at 329.945 kb on + strand, within OLJFJH_01870at 329.946 kb on - strand, within OLJFJH_01870at 329.946 kb on - strand, within OLJFJH_01870at 329.946 kb on - strand, within OLJFJH_01870at 330.059 kb on - strand, within OLJFJH_01870at 330.154 kb on + strandat 330.160 kb on + strandat 330.170 kb on + strandat 330.192 kb on + strandat 330.193 kb on - strandat 330.346 kb on - strand, within OLJFJH_01875at 330.346 kb on - strand, within OLJFJH_01875at 330.398 kb on + strand, within OLJFJH_01875

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-7
remove
327,442 - OLJFJH_01855 0.23 -0.7
327,515 - OLJFJH_01855 0.39 -0.7
327,517 + OLJFJH_01855 0.39 -1.7
327,517 + OLJFJH_01855 0.39 -3.2
327,518 - OLJFJH_01855 0.39 +0.4
327,550 + OLJFJH_01855 0.46 -3.2
327,566 + OLJFJH_01855 0.49 -2.2
327,567 - OLJFJH_01855 0.49 +1.2
327,576 - OLJFJH_01855 0.51 -0.5
327,576 - OLJFJH_01855 0.51 -1.5
327,576 - OLJFJH_01855 0.51 -1.2
327,623 - OLJFJH_01855 0.61 +1.3
327,694 + OLJFJH_01855 0.76 -1.2
327,763 + -3.5
327,795 + -0.9
327,796 - -0.0
327,796 - -0.8
327,800 - +0.3
327,819 + -2.8
327,820 - -0.6
327,829 - +0.7
327,833 - -1.0
327,881 + -2.3
327,899 + -2.6
327,922 - +0.4
327,933 - OLJFJH_01860 0.16 -0.0
327,937 - OLJFJH_01860 0.20 +0.1
328,060 - +0.2
328,070 + -2.3
328,071 - -0.0
328,075 - +0.3
328,162 + -2.6
328,192 + -3.4
328,192 + -2.2
328,297 + OLJFJH_01865 0.14 -2.4
328,297 + OLJFJH_01865 0.14 -2.1
328,297 + OLJFJH_01865 0.14 -1.8
328,297 + OLJFJH_01865 0.14 -2.3
328,297 + OLJFJH_01865 0.14 -2.3
328,297 + OLJFJH_01865 0.14 -2.0
328,298 - OLJFJH_01865 0.14 +0.4
328,384 + OLJFJH_01865 0.20 -3.2
328,414 + OLJFJH_01865 0.22 -2.7
328,542 - OLJFJH_01865 0.30 -0.6
328,608 - OLJFJH_01865 0.35 -0.0
328,691 + OLJFJH_01865 0.40 -2.6
328,692 - OLJFJH_01865 0.40 -0.6
328,724 + OLJFJH_01865 0.42 -2.7
328,762 + OLJFJH_01865 0.45 -3.0
328,762 + OLJFJH_01865 0.45 -3.1
328,762 + OLJFJH_01865 0.45 -2.7
328,763 - OLJFJH_01865 0.45 -0.4
328,763 - OLJFJH_01865 0.45 +0.2
328,763 - OLJFJH_01865 0.45 -0.2
329,089 + OLJFJH_01865 0.67 -1.6
329,089 + OLJFJH_01865 0.67 -1.8
329,092 + OLJFJH_01865 0.67 -1.4
329,092 + OLJFJH_01865 0.67 -2.2
329,092 + OLJFJH_01865 0.67 -1.4
329,137 + OLJFJH_01865 0.70 -2.6
329,150 - OLJFJH_01865 0.71 +0.8
329,150 - OLJFJH_01865 0.71 -1.0
329,150 - OLJFJH_01865 0.71 +0.1
329,150 - OLJFJH_01865 0.71 -0.4
329,226 - OLJFJH_01865 0.76 +0.9
329,238 - OLJFJH_01865 0.77 -0.3
329,284 + OLJFJH_01865 0.80 -3.0
329,285 - OLJFJH_01865 0.80 -0.1
329,426 + OLJFJH_01865 0.89 -2.2
329,593 + -1.0
329,648 + OLJFJH_01870 0.10 -2.4
329,649 - OLJFJH_01870 0.11 +4.2
329,722 + OLJFJH_01870 0.24 -1.4
329,722 + OLJFJH_01870 0.24 -2.7
329,722 + OLJFJH_01870 0.24 -1.0
329,722 + OLJFJH_01870 0.24 -3.4
329,722 + OLJFJH_01870 0.24 -1.0
329,722 + OLJFJH_01870 0.24 -2.6
329,723 - OLJFJH_01870 0.24 -0.4
329,945 + OLJFJH_01870 0.66 -2.0
329,945 + OLJFJH_01870 0.66 -3.7
329,945 + OLJFJH_01870 0.66 -2.4
329,945 + OLJFJH_01870 0.66 -3.6
329,945 + OLJFJH_01870 0.66 -1.9
329,946 - OLJFJH_01870 0.66 -0.0
329,946 - OLJFJH_01870 0.66 +0.8
329,946 - OLJFJH_01870 0.66 -0.8
330,059 - OLJFJH_01870 0.87 +0.2
330,154 + -1.8
330,160 + -3.0
330,170 + -0.8
330,192 + -1.3
330,193 - -0.7
330,346 - OLJFJH_01875 0.15 +0.6
330,346 - OLJFJH_01875 0.15 +1.1
330,398 + OLJFJH_01875 0.20 -1.8

Or see this region's nucleotide sequence