Strain Fitness in Erwinia amylovora T8 around OLJFJH_01855

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01845 and OLJFJH_01850 overlap by 16 nucleotidesOLJFJH_01850 and OLJFJH_01855 are separated by 78 nucleotidesOLJFJH_01855 and OLJFJH_01860 are separated by 104 nucleotidesOLJFJH_01860 and OLJFJH_01865 are separated by 68 nucleotides OLJFJH_01845: OLJFJH_01845 - type VI secretion protein, at 326,418 to 326,786 _01845 OLJFJH_01850: OLJFJH_01850 - Putative cytoplasmic protein, at 326,771 to 327,250 _01850 OLJFJH_01855: OLJFJH_01855 - type VI secretion system tube protein Hcp, at 327,329 to 327,811 _01855 OLJFJH_01860: OLJFJH_01860 - hypothetical protein, at 327,916 to 328,020 _01860 OLJFJH_01865: OLJFJH_01865 - type VI secretion system contractile sheath large subunit, at 328,089 to 329,588 _01865 Position (kb) 327 328Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 326.363 kb on + strandat 326.709 kb on - strand, within OLJFJH_01845at 326.787 kb on - strandat 326.974 kb on + strand, within OLJFJH_01850at 327.003 kb on - strand, within OLJFJH_01850at 327.442 kb on - strand, within OLJFJH_01855at 327.515 kb on - strand, within OLJFJH_01855at 327.517 kb on + strand, within OLJFJH_01855at 327.517 kb on + strand, within OLJFJH_01855at 327.518 kb on - strand, within OLJFJH_01855at 327.550 kb on + strand, within OLJFJH_01855at 327.566 kb on + strand, within OLJFJH_01855at 327.567 kb on - strand, within OLJFJH_01855at 327.576 kb on - strand, within OLJFJH_01855at 327.576 kb on - strand, within OLJFJH_01855at 327.576 kb on - strand, within OLJFJH_01855at 327.623 kb on - strand, within OLJFJH_01855at 327.694 kb on + strand, within OLJFJH_01855at 327.763 kb on + strandat 327.795 kb on + strandat 327.796 kb on - strandat 327.796 kb on - strandat 327.800 kb on - strandat 327.819 kb on + strandat 327.820 kb on - strandat 327.829 kb on - strandat 327.833 kb on - strandat 327.881 kb on + strandat 327.899 kb on + strandat 327.922 kb on - strandat 327.933 kb on - strand, within OLJFJH_01860at 327.937 kb on - strand, within OLJFJH_01860at 328.060 kb on - strandat 328.070 kb on + strandat 328.071 kb on - strandat 328.075 kb on - strandat 328.162 kb on + strandat 328.192 kb on + strandat 328.192 kb on + strandat 328.297 kb on + strand, within OLJFJH_01865at 328.297 kb on + strand, within OLJFJH_01865at 328.297 kb on + strand, within OLJFJH_01865at 328.297 kb on + strand, within OLJFJH_01865at 328.297 kb on + strand, within OLJFJH_01865at 328.297 kb on + strand, within OLJFJH_01865at 328.298 kb on - strand, within OLJFJH_01865at 328.384 kb on + strand, within OLJFJH_01865at 328.414 kb on + strand, within OLJFJH_01865at 328.542 kb on - strand, within OLJFJH_01865at 328.608 kb on - strand, within OLJFJH_01865at 328.691 kb on + strand, within OLJFJH_01865at 328.692 kb on - strand, within OLJFJH_01865at 328.724 kb on + strand, within OLJFJH_01865at 328.762 kb on + strand, within OLJFJH_01865at 328.762 kb on + strand, within OLJFJH_01865at 328.762 kb on + strand, within OLJFJH_01865at 328.763 kb on - strand, within OLJFJH_01865at 328.763 kb on - strand, within OLJFJH_01865at 328.763 kb on - strand, within OLJFJH_01865

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-7
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326,363 + +5.6
326,709 - OLJFJH_01845 0.79 -2.4
326,787 - -1.0
326,974 + OLJFJH_01850 0.42 -0.1
327,003 - OLJFJH_01850 0.48 -0.4
327,442 - OLJFJH_01855 0.23 -0.7
327,515 - OLJFJH_01855 0.39 -0.7
327,517 + OLJFJH_01855 0.39 -1.7
327,517 + OLJFJH_01855 0.39 -3.2
327,518 - OLJFJH_01855 0.39 +0.4
327,550 + OLJFJH_01855 0.46 -3.2
327,566 + OLJFJH_01855 0.49 -2.2
327,567 - OLJFJH_01855 0.49 +1.2
327,576 - OLJFJH_01855 0.51 -0.5
327,576 - OLJFJH_01855 0.51 -1.5
327,576 - OLJFJH_01855 0.51 -1.2
327,623 - OLJFJH_01855 0.61 +1.3
327,694 + OLJFJH_01855 0.76 -1.2
327,763 + -3.5
327,795 + -0.9
327,796 - -0.0
327,796 - -0.8
327,800 - +0.3
327,819 + -2.8
327,820 - -0.6
327,829 - +0.7
327,833 - -1.0
327,881 + -2.3
327,899 + -2.6
327,922 - +0.4
327,933 - OLJFJH_01860 0.16 -0.0
327,937 - OLJFJH_01860 0.20 +0.1
328,060 - +0.2
328,070 + -2.3
328,071 - -0.0
328,075 - +0.3
328,162 + -2.6
328,192 + -3.4
328,192 + -2.2
328,297 + OLJFJH_01865 0.14 -2.4
328,297 + OLJFJH_01865 0.14 -2.1
328,297 + OLJFJH_01865 0.14 -1.8
328,297 + OLJFJH_01865 0.14 -2.3
328,297 + OLJFJH_01865 0.14 -2.3
328,297 + OLJFJH_01865 0.14 -2.0
328,298 - OLJFJH_01865 0.14 +0.4
328,384 + OLJFJH_01865 0.20 -3.2
328,414 + OLJFJH_01865 0.22 -2.7
328,542 - OLJFJH_01865 0.30 -0.6
328,608 - OLJFJH_01865 0.35 -0.0
328,691 + OLJFJH_01865 0.40 -2.6
328,692 - OLJFJH_01865 0.40 -0.6
328,724 + OLJFJH_01865 0.42 -2.7
328,762 + OLJFJH_01865 0.45 -3.0
328,762 + OLJFJH_01865 0.45 -3.1
328,762 + OLJFJH_01865 0.45 -2.7
328,763 - OLJFJH_01865 0.45 -0.4
328,763 - OLJFJH_01865 0.45 +0.2
328,763 - OLJFJH_01865 0.45 -0.2

Or see this region's nucleotide sequence