Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01800 and OLJFJH_01805 overlap by 4 nucleotides OLJFJH_01805 and OLJFJH_01810 are separated by 18 nucleotides OLJFJH_01810 and OLJFJH_01815 overlap by 4 nucleotides
OLJFJH_01800: OLJFJH_01800 - Type VI secretion system core protein, at 317,254 to 318,318
_01800
OLJFJH_01805: OLJFJH_01805 - type VI secretion system baseplate subunit TssF, at 318,315 to 320,189
_01805
OLJFJH_01810: OLJFJH_01810 - type VI secretion system baseplate subunit TssE, at 320,208 to 320,774
_01810
OLJFJH_01815: OLJFJH_01815 - protein of avirulence locus ImpE, at 320,771 to 321,592
_01815
Position (kb) 318
319
320
321 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 317.496 kb on - strand, within OLJFJH_01800 at 317.542 kb on + strand, within OLJFJH_01800 at 317.543 kb on - strand, within OLJFJH_01800 at 317.981 kb on + strand, within OLJFJH_01800 at 318.318 kb on + strand at 318.622 kb on + strand, within OLJFJH_01805 at 318.622 kb on + strand, within OLJFJH_01805 at 318.623 kb on - strand, within OLJFJH_01805 at 318.688 kb on + strand, within OLJFJH_01805 at 318.857 kb on + strand, within OLJFJH_01805 at 318.857 kb on + strand, within OLJFJH_01805 at 318.858 kb on - strand, within OLJFJH_01805 at 318.880 kb on + strand, within OLJFJH_01805 at 318.934 kb on - strand, within OLJFJH_01805 at 318.949 kb on + strand, within OLJFJH_01805 at 319.018 kb on + strand, within OLJFJH_01805 at 319.018 kb on + strand, within OLJFJH_01805 at 319.018 kb on + strand, within OLJFJH_01805 at 319.018 kb on + strand, within OLJFJH_01805 at 319.019 kb on - strand, within OLJFJH_01805 at 319.019 kb on - strand, within OLJFJH_01805 at 319.105 kb on + strand, within OLJFJH_01805 at 319.106 kb on - strand, within OLJFJH_01805 at 319.106 kb on - strand, within OLJFJH_01805 at 319.168 kb on + strand, within OLJFJH_01805 at 319.168 kb on + strand, within OLJFJH_01805 at 319.169 kb on - strand, within OLJFJH_01805 at 319.169 kb on - strand, within OLJFJH_01805 at 319.306 kb on - strand, within OLJFJH_01805 at 319.402 kb on + strand, within OLJFJH_01805 at 319.403 kb on - strand, within OLJFJH_01805 at 319.403 kb on - strand, within OLJFJH_01805 at 319.552 kb on + strand, within OLJFJH_01805 at 319.552 kb on + strand, within OLJFJH_01805 at 319.553 kb on - strand, within OLJFJH_01805 at 319.553 kb on - strand, within OLJFJH_01805 at 319.631 kb on + strand, within OLJFJH_01805 at 319.631 kb on + strand, within OLJFJH_01805 at 319.801 kb on + strand, within OLJFJH_01805 at 319.802 kb on - strand, within OLJFJH_01805 at 319.802 kb on - strand, within OLJFJH_01805 at 319.942 kb on + strand, within OLJFJH_01805 at 319.942 kb on + strand, within OLJFJH_01805 at 319.943 kb on - strand, within OLJFJH_01805 at 320.164 kb on + strand at 320.164 kb on + strand at 320.165 kb on - strand at 320.181 kb on - strand at 320.313 kb on + strand, within OLJFJH_01810 at 320.402 kb on + strand, within OLJFJH_01810 at 320.418 kb on + strand, within OLJFJH_01810 at 320.418 kb on + strand, within OLJFJH_01810 at 320.418 kb on + strand, within OLJFJH_01810 at 320.419 kb on - strand, within OLJFJH_01810 at 320.546 kb on + strand, within OLJFJH_01810 at 320.585 kb on + strand, within OLJFJH_01810 at 320.585 kb on + strand, within OLJFJH_01810 at 321.010 kb on + strand, within OLJFJH_01815 at 321.011 kb on - strand, within OLJFJH_01815
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-7 remove 317,496 - OLJFJH_01800 0.23 +1.1 317,542 + OLJFJH_01800 0.27 +1.7 317,543 - OLJFJH_01800 0.27 -0.2 317,981 + OLJFJH_01800 0.68 +3.8 318,318 + +2.1 318,622 + OLJFJH_01805 0.16 +1.7 318,622 + OLJFJH_01805 0.16 +2.5 318,623 - OLJFJH_01805 0.16 -0.1 318,688 + OLJFJH_01805 0.20 +3.4 318,857 + OLJFJH_01805 0.29 +4.4 318,857 + OLJFJH_01805 0.29 -1.0 318,858 - OLJFJH_01805 0.29 +0.7 318,880 + OLJFJH_01805 0.30 +1.6 318,934 - OLJFJH_01805 0.33 -0.0 318,949 + OLJFJH_01805 0.34 +4.4 319,018 + OLJFJH_01805 0.37 +4.0 319,018 + OLJFJH_01805 0.37 +3.8 319,018 + OLJFJH_01805 0.37 +1.5 319,018 + OLJFJH_01805 0.37 +3.1 319,019 - OLJFJH_01805 0.38 -0.4 319,019 - OLJFJH_01805 0.38 -1.6 319,105 + OLJFJH_01805 0.42 +2.2 319,106 - OLJFJH_01805 0.42 -0.6 319,106 - OLJFJH_01805 0.42 +0.1 319,168 + OLJFJH_01805 0.45 +1.1 319,168 + OLJFJH_01805 0.45 +3.0 319,169 - OLJFJH_01805 0.46 -0.7 319,169 - OLJFJH_01805 0.46 +0.8 319,306 - OLJFJH_01805 0.53 -1.9 319,402 + OLJFJH_01805 0.58 +0.8 319,403 - OLJFJH_01805 0.58 +1.1 319,403 - OLJFJH_01805 0.58 -0.2 319,552 + OLJFJH_01805 0.66 +5.4 319,552 + OLJFJH_01805 0.66 +2.0 319,553 - OLJFJH_01805 0.66 -0.3 319,553 - OLJFJH_01805 0.66 -1.3 319,631 + OLJFJH_01805 0.70 +2.0 319,631 + OLJFJH_01805 0.70 +2.9 319,801 + OLJFJH_01805 0.79 +1.6 319,802 - OLJFJH_01805 0.79 -0.7 319,802 - OLJFJH_01805 0.79 +0.2 319,942 + OLJFJH_01805 0.87 +4.9 319,942 + OLJFJH_01805 0.87 +3.5 319,943 - OLJFJH_01805 0.87 +0.2 320,164 + +1.9 320,164 + +3.9 320,165 - -0.5 320,181 - +1.1 320,313 + OLJFJH_01810 0.19 +0.3 320,402 + OLJFJH_01810 0.34 +3.2 320,418 + OLJFJH_01810 0.37 +0.3 320,418 + OLJFJH_01810 0.37 +2.3 320,418 + OLJFJH_01810 0.37 +0.9 320,419 - OLJFJH_01810 0.37 +0.5 320,546 + OLJFJH_01810 0.60 +4.0 320,585 + OLJFJH_01810 0.66 +5.1 320,585 + OLJFJH_01810 0.66 +4.0 321,010 + OLJFJH_01815 0.29 +3.6 321,011 - OLJFJH_01815 0.29 -0.6
Or see this region's nucleotide sequence