Experiment: Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_04550 and OLJFJH_04555 are separated by 378 nucleotides OLJFJH_04555 and OLJFJH_04560 are separated by 83 nucleotides
OLJFJH_04550: OLJFJH_04550 - hypothetical protein, at 885,146 to 887,836
_04550
OLJFJH_04555: OLJFJH_04555 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 888,215 to 889,057
_04555
OLJFJH_04560: OLJFJH_04560 - ribonuclease Z, at 889,141 to 890,055
_04560
Position (kb) 888
889
890 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 887.269 kb on - strand, within OLJFJH_04550 at 887.306 kb on + strand, within OLJFJH_04550 at 887.728 kb on + strand at 887.795 kb on + strand at 887.934 kb on - strand at 887.934 kb on - strand at 887.935 kb on + strand at 887.936 kb on - strand at 888.025 kb on + strand at 888.039 kb on + strand at 888.073 kb on + strand at 888.074 kb on - strand at 888.074 kb on - strand at 888.075 kb on + strand at 888.075 kb on + strand at 888.076 kb on - strand at 888.154 kb on + strand at 888.155 kb on - strand at 888.155 kb on - strand at 888.155 kb on - strand at 888.155 kb on - strand at 888.320 kb on + strand, within OLJFJH_04555 at 888.320 kb on + strand, within OLJFJH_04555 at 888.415 kb on + strand, within OLJFJH_04555 at 888.434 kb on - strand, within OLJFJH_04555 at 888.434 kb on - strand, within OLJFJH_04555 at 888.434 kb on - strand, within OLJFJH_04555 at 888.455 kb on + strand, within OLJFJH_04555 at 888.555 kb on + strand, within OLJFJH_04555 at 888.555 kb on + strand, within OLJFJH_04555 at 888.556 kb on - strand, within OLJFJH_04555 at 888.693 kb on + strand, within OLJFJH_04555 at 888.713 kb on + strand, within OLJFJH_04555 at 888.714 kb on - strand, within OLJFJH_04555 at 888.714 kb on - strand, within OLJFJH_04555 at 888.832 kb on + strand, within OLJFJH_04555 at 888.833 kb on - strand, within OLJFJH_04555 at 888.833 kb on - strand, within OLJFJH_04555 at 888.944 kb on - strand, within OLJFJH_04555 at 888.997 kb on + strand at 889.220 kb on + strand at 889.221 kb on - strand at 889.221 kb on - strand at 889.532 kb on + strand, within OLJFJH_04560 at 889.538 kb on + strand, within OLJFJH_04560 at 889.539 kb on - strand, within OLJFJH_04560 at 889.539 kb on - strand, within OLJFJH_04560 at 889.681 kb on + strand, within OLJFJH_04560 at 889.682 kb on - strand, within OLJFJH_04560 at 889.768 kb on + strand, within OLJFJH_04560 at 889.784 kb on + strand, within OLJFJH_04560 at 889.851 kb on + strand, within OLJFJH_04560 at 889.852 kb on - strand, within OLJFJH_04560
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-5 remove 887,269 - OLJFJH_04550 0.79 +1.8 887,306 + OLJFJH_04550 0.80 -1.2 887,728 + +0.3 887,795 + -1.0 887,934 - -1.5 887,934 - -0.4 887,935 + -0.8 887,936 - +0.4 888,025 + +0.8 888,039 + +2.8 888,073 + +1.8 888,074 - -0.5 888,074 - +0.7 888,075 + +1.0 888,075 + +1.4 888,076 - -0.9 888,154 + -3.3 888,155 - -0.5 888,155 - -1.3 888,155 - -0.2 888,155 - -0.2 888,320 + OLJFJH_04555 0.12 +0.9 888,320 + OLJFJH_04555 0.12 -1.1 888,415 + OLJFJH_04555 0.24 +0.5 888,434 - OLJFJH_04555 0.26 -0.7 888,434 - OLJFJH_04555 0.26 -0.9 888,434 - OLJFJH_04555 0.26 -1.7 888,455 + OLJFJH_04555 0.28 +1.3 888,555 + OLJFJH_04555 0.40 -0.1 888,555 + OLJFJH_04555 0.40 -0.2 888,556 - OLJFJH_04555 0.40 -0.4 888,693 + OLJFJH_04555 0.57 -0.9 888,713 + OLJFJH_04555 0.59 -3.1 888,714 - OLJFJH_04555 0.59 -0.8 888,714 - OLJFJH_04555 0.59 -0.9 888,832 + OLJFJH_04555 0.73 -0.8 888,833 - OLJFJH_04555 0.73 -0.7 888,833 - OLJFJH_04555 0.73 -0.7 888,944 - OLJFJH_04555 0.86 -0.5 888,997 + +0.5 889,220 + +1.1 889,221 - +2.7 889,221 - -0.1 889,532 + OLJFJH_04560 0.43 -1.5 889,538 + OLJFJH_04560 0.43 -1.5 889,539 - OLJFJH_04560 0.43 -0.5 889,539 - OLJFJH_04560 0.43 +0.7 889,681 + OLJFJH_04560 0.59 +0.4 889,682 - OLJFJH_04560 0.59 -1.8 889,768 + OLJFJH_04560 0.69 +0.2 889,784 + OLJFJH_04560 0.70 -0.9 889,851 + OLJFJH_04560 0.78 -1.6 889,852 - OLJFJH_04560 0.78 +1.3
Or see this region's nucleotide sequence