Experiment: Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01340 and OLJFJH_01345 are separated by 41 nucleotides OLJFJH_01345 and OLJFJH_01350 are separated by 167 nucleotides
OLJFJH_01340: OLJFJH_01340 - RNA polymerase-associated protein RapA, at 207,544 to 210,450
_01340
OLJFJH_01345: OLJFJH_01345 - bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA, at 210,492 to 211,145
_01345
OLJFJH_01350: OLJFJH_01350 - co-chaperone DjlA, at 211,313 to 212,137
_01350
Position (kb) 210
211
212 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 209.500 kb on + strand, within OLJFJH_01340 at 209.680 kb on - strand, within OLJFJH_01340 at 209.778 kb on + strand, within OLJFJH_01340 at 209.778 kb on + strand, within OLJFJH_01340 at 209.779 kb on - strand, within OLJFJH_01340 at 209.779 kb on - strand, within OLJFJH_01340 at 209.779 kb on - strand, within OLJFJH_01340 at 209.820 kb on + strand, within OLJFJH_01340 at 209.821 kb on - strand, within OLJFJH_01340 at 209.870 kb on - strand, within OLJFJH_01340 at 209.962 kb on - strand, within OLJFJH_01340 at 210.001 kb on + strand, within OLJFJH_01340 at 210.001 kb on + strand, within OLJFJH_01340 at 210.001 kb on + strand, within OLJFJH_01340 at 210.002 kb on - strand, within OLJFJH_01340 at 210.138 kb on + strand, within OLJFJH_01340 at 210.139 kb on - strand, within OLJFJH_01340 at 210.205 kb on - strand at 210.448 kb on + strand at 210.491 kb on + strand at 210.501 kb on + strand at 210.502 kb on - strand at 210.772 kb on - strand, within OLJFJH_01345 at 210.901 kb on - strand, within OLJFJH_01345 at 210.987 kb on - strand, within OLJFJH_01345 at 210.987 kb on - strand, within OLJFJH_01345 at 211.027 kb on - strand, within OLJFJH_01345 at 211.027 kb on - strand, within OLJFJH_01345 at 211.027 kb on - strand, within OLJFJH_01345 at 211.027 kb on - strand, within OLJFJH_01345 at 211.259 kb on + strand at 211.259 kb on + strand at 211.260 kb on - strand at 211.348 kb on - strand at 211.348 kb on - strand at 211.348 kb on - strand at 211.671 kb on + strand, within OLJFJH_01350 at 211.671 kb on + strand, within OLJFJH_01350 at 211.671 kb on + strand, within OLJFJH_01350 at 211.690 kb on + strand, within OLJFJH_01350 at 212.045 kb on - strand, within OLJFJH_01350 at 212.097 kb on - strand at 212.115 kb on - strand at 212.117 kb on + strand at 212.137 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-5 remove 209,500 + OLJFJH_01340 0.67 -0.9 209,680 - OLJFJH_01340 0.73 -0.2 209,778 + OLJFJH_01340 0.77 -1.2 209,778 + OLJFJH_01340 0.77 -0.3 209,779 - OLJFJH_01340 0.77 +0.3 209,779 - OLJFJH_01340 0.77 -1.4 209,779 - OLJFJH_01340 0.77 -0.1 209,820 + OLJFJH_01340 0.78 +0.2 209,821 - OLJFJH_01340 0.78 -0.5 209,870 - OLJFJH_01340 0.80 +0.6 209,962 - OLJFJH_01340 0.83 +0.7 210,001 + OLJFJH_01340 0.85 +2.2 210,001 + OLJFJH_01340 0.85 +2.1 210,001 + OLJFJH_01340 0.85 +0.8 210,002 - OLJFJH_01340 0.85 -0.2 210,138 + OLJFJH_01340 0.89 -2.0 210,139 - OLJFJH_01340 0.89 +0.9 210,205 - +0.7 210,448 + -0.6 210,491 + -0.4 210,501 + -1.9 210,502 - +2.0 210,772 - OLJFJH_01345 0.43 +3.7 210,901 - OLJFJH_01345 0.63 +1.0 210,987 - OLJFJH_01345 0.76 -1.7 210,987 - OLJFJH_01345 0.76 +3.4 211,027 - OLJFJH_01345 0.82 -0.1 211,027 - OLJFJH_01345 0.82 -1.1 211,027 - OLJFJH_01345 0.82 -1.2 211,027 - OLJFJH_01345 0.82 -2.1 211,259 + -0.4 211,259 + -0.0 211,260 - +0.6 211,348 - -0.8 211,348 - -0.9 211,348 - -1.3 211,671 + OLJFJH_01350 0.43 -0.8 211,671 + OLJFJH_01350 0.43 -0.3 211,671 + OLJFJH_01350 0.43 -0.6 211,690 + OLJFJH_01350 0.46 -1.8 212,045 - OLJFJH_01350 0.89 -0.9 212,097 - +0.5 212,115 - -0.2 212,117 + -1.3 212,137 + -0.6
Or see this region's nucleotide sequence