Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16280

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS06505 and A4249_RS06510 are separated by 18 nucleotidesA4249_RS06510 and A4249_RS16765 are separated by 103 nucleotidesA4249_RS16765 and A4249_RS16280 are separated by 116 nucleotidesA4249_RS16280 and A4249_RS06515 are separated by 84 nucleotides A4249_RS06505: A4249_RS06505 - MBL fold metallo-hydrolase, at 1,324,503 to 1,325,204 _RS06505 A4249_RS06510: A4249_RS06510 - hypothetical protein, at 1,325,223 to 1,325,516 _RS06510 A4249_RS16765: A4249_RS16765 - hypothetical protein, at 1,325,620 to 1,325,781 _RS16765 A4249_RS16280: A4249_RS16280 - general stress protein, at 1,325,898 to 1,326,119 _RS16280 A4249_RS06515: A4249_RS06515 - ergothioneine biosynthesis protein EgtB, at 1,326,204 to 1,328,363 _RS06515 Position (kb) 1325 1326 1327Strain fitness (log2 ratio) -2 -1 0 1 2at 1324.919 kb on + strand, within A4249_RS06505at 1324.919 kb on + strand, within A4249_RS06505at 1324.920 kb on - strand, within A4249_RS06505at 1325.219 kb on + strandat 1325.219 kb on + strandat 1325.220 kb on - strandat 1325.220 kb on - strandat 1325.269 kb on + strand, within A4249_RS06510at 1325.269 kb on + strand, within A4249_RS06510at 1325.269 kb on + strand, within A4249_RS06510at 1325.270 kb on - strand, within A4249_RS06510at 1325.270 kb on - strand, within A4249_RS06510at 1325.270 kb on - strand, within A4249_RS06510at 1325.270 kb on - strand, within A4249_RS06510at 1325.363 kb on + strand, within A4249_RS06510at 1325.364 kb on - strand, within A4249_RS06510at 1325.508 kb on - strandat 1325.626 kb on + strandat 1325.626 kb on + strandat 1325.626 kb on + strandat 1325.626 kb on + strandat 1325.626 kb on + strandat 1325.626 kb on + strandat 1325.626 kb on + strandat 1325.626 kb on + strandat 1325.626 kb on + strandat 1325.626 kb on + strandat 1325.626 kb on + strandat 1325.626 kb on + strandat 1325.626 kb on + strandat 1325.626 kb on + strandat 1325.626 kb on + strandat 1325.626 kb on + strandat 1325.627 kb on - strandat 1325.627 kb on - strandat 1325.627 kb on - strandat 1325.627 kb on - strandat 1325.627 kb on - strandat 1325.627 kb on - strandat 1325.627 kb on - strandat 1325.627 kb on - strandat 1325.627 kb on - strandat 1325.627 kb on - strandat 1325.627 kb on - strandat 1325.627 kb on - strandat 1325.627 kb on - strandat 1325.627 kb on - strandat 1325.627 kb on - strandat 1325.693 kb on + strand, within A4249_RS16765at 1325.693 kb on + strand, within A4249_RS16765at 1325.693 kb on + strand, within A4249_RS16765at 1325.694 kb on - strand, within A4249_RS16765at 1325.694 kb on - strand, within A4249_RS16765at 1325.694 kb on - strand, within A4249_RS16765at 1325.694 kb on - strand, within A4249_RS16765at 1325.767 kb on + strandat 1325.767 kb on + strandat 1325.767 kb on + strandat 1325.768 kb on - strandat 1325.768 kb on - strandat 1325.779 kb on + strandat 1325.817 kb on - strandat 1325.817 kb on - strandat 1325.817 kb on - strandat 1326.086 kb on + strand, within A4249_RS16280at 1326.086 kb on + strand, within A4249_RS16280at 1326.086 kb on + strand, within A4249_RS16280at 1326.086 kb on + strand, within A4249_RS16280at 1326.086 kb on + strand, within A4249_RS16280at 1326.086 kb on + strand, within A4249_RS16280at 1326.086 kb on + strand, within A4249_RS16280at 1326.086 kb on + strand, within A4249_RS16280at 1326.086 kb on + strand, within A4249_RS16280at 1326.087 kb on - strand, within A4249_RS16280at 1326.087 kb on - strand, within A4249_RS16280at 1326.117 kb on + strandat 1326.118 kb on - strandat 1326.118 kb on - strandat 1326.134 kb on + strandat 1326.134 kb on + strandat 1326.135 kb on - strandat 1326.135 kb on - strandat 1326.248 kb on + strandat 1326.248 kb on + strandat 1326.249 kb on - strandat 1326.249 kb on - strandat 1326.249 kb on - strandat 1326.547 kb on + strand, within A4249_RS06515at 1326.548 kb on - strand, within A4249_RS06515at 1326.548 kb on - strand, within A4249_RS06515at 1326.548 kb on - strand, within A4249_RS06515at 1326.615 kb on + strand, within A4249_RS06515at 1326.615 kb on + strand, within A4249_RS06515at 1326.616 kb on - strand, within A4249_RS06515at 1326.616 kb on - strand, within A4249_RS06515at 1326.616 kb on - strand, within A4249_RS06515at 1326.782 kb on - strand, within A4249_RS06515at 1326.845 kb on - strand, within A4249_RS06515at 1326.845 kb on - strand, within A4249_RS06515at 1326.845 kb on - strand, within A4249_RS06515at 1326.845 kb on - strand, within A4249_RS06515at 1326.871 kb on - strand, within A4249_RS06515at 1326.871 kb on - strand, within A4249_RS06515at 1326.997 kb on + strand, within A4249_RS06515at 1326.997 kb on + strand, within A4249_RS06515at 1326.997 kb on + strand, within A4249_RS06515at 1326.998 kb on - strand, within A4249_RS06515at 1326.998 kb on - strand, within A4249_RS06515at 1326.998 kb on - strand, within A4249_RS06515at 1326.998 kb on - strand, within A4249_RS06515at 1327.048 kb on + strand, within A4249_RS06515at 1327.048 kb on + strand, within A4249_RS06515at 1327.048 kb on + strand, within A4249_RS06515at 1327.049 kb on - strand, within A4249_RS06515at 1327.049 kb on - strand, within A4249_RS06515at 1327.049 kb on - strand, within A4249_RS06515at 1327.049 kb on - strand, within A4249_RS06515at 1327.049 kb on - strand, within A4249_RS06515at 1327.049 kb on - strand, within A4249_RS06515at 1327.049 kb on - strand, within A4249_RS06515at 1327.100 kb on + strand, within A4249_RS06515at 1327.100 kb on + strand, within A4249_RS06515at 1327.100 kb on + strand, within A4249_RS06515at 1327.100 kb on + strand, within A4249_RS06515at 1327.100 kb on + strand, within A4249_RS06515at 1327.100 kb on + strand, within A4249_RS06515at 1327.100 kb on + strand, within A4249_RS06515at 1327.100 kb on + strand, within A4249_RS06515at 1327.101 kb on - strand, within A4249_RS06515at 1327.101 kb on - strand, within A4249_RS06515at 1327.101 kb on - strand, within A4249_RS06515

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
1,324,919 + A4249_RS06505 0.59 +0.3
1,324,919 + A4249_RS06505 0.59 -1.2
1,324,920 - A4249_RS06505 0.59 -0.0
1,325,219 + +0.7
1,325,219 + +0.1
1,325,220 - -0.6
1,325,220 - -0.0
1,325,269 + A4249_RS06510 0.16 +0.6
1,325,269 + A4249_RS06510 0.16 -1.1
1,325,269 + A4249_RS06510 0.16 -0.4
1,325,270 - A4249_RS06510 0.16 -1.1
1,325,270 - A4249_RS06510 0.16 -0.2
1,325,270 - A4249_RS06510 0.16 -0.8
1,325,270 - A4249_RS06510 0.16 -0.1
1,325,363 + A4249_RS06510 0.48 -0.3
1,325,364 - A4249_RS06510 0.48 -0.1
1,325,508 - +0.1
1,325,626 + +0.4
1,325,626 + -0.1
1,325,626 + -0.4
1,325,626 + -0.3
1,325,626 + -0.6
1,325,626 + +0.9
1,325,626 + +0.3
1,325,626 + -0.1
1,325,626 + +0.0
1,325,626 + +0.2
1,325,626 + -1.6
1,325,626 + +0.4
1,325,626 + +0.5
1,325,626 + +0.2
1,325,626 + -0.1
1,325,626 + -1.0
1,325,627 - -0.5
1,325,627 - -0.8
1,325,627 - -0.7
1,325,627 - -0.2
1,325,627 - -2.1
1,325,627 - +0.9
1,325,627 - -0.1
1,325,627 - +0.6
1,325,627 - -0.3
1,325,627 - -0.4
1,325,627 - +0.3
1,325,627 - +0.0
1,325,627 - +0.5
1,325,627 - +0.2
1,325,627 - +0.1
1,325,693 + A4249_RS16765 0.45 -0.1
1,325,693 + A4249_RS16765 0.45 -0.7
1,325,693 + A4249_RS16765 0.45 +0.1
1,325,694 - A4249_RS16765 0.46 +0.8
1,325,694 - A4249_RS16765 0.46 -1.0
1,325,694 - A4249_RS16765 0.46 -0.3
1,325,694 - A4249_RS16765 0.46 -0.1
1,325,767 + +0.2
1,325,767 + +1.8
1,325,767 + -0.1
1,325,768 - -1.1
1,325,768 - -0.1
1,325,779 + -0.4
1,325,817 - +0.9
1,325,817 - +0.0
1,325,817 - +1.3
1,326,086 + A4249_RS16280 0.85 -1.0
1,326,086 + A4249_RS16280 0.85 -1.1
1,326,086 + A4249_RS16280 0.85 +0.5
1,326,086 + A4249_RS16280 0.85 -0.8
1,326,086 + A4249_RS16280 0.85 +0.0
1,326,086 + A4249_RS16280 0.85 +0.1
1,326,086 + A4249_RS16280 0.85 -0.9
1,326,086 + A4249_RS16280 0.85 -0.1
1,326,086 + A4249_RS16280 0.85 +0.3
1,326,087 - A4249_RS16280 0.85 -0.0
1,326,087 - A4249_RS16280 0.85 -1.7
1,326,117 + +1.0
1,326,118 - +0.2
1,326,118 - -0.9
1,326,134 + -0.9
1,326,134 + -0.1
1,326,135 - -0.1
1,326,135 - -0.8
1,326,248 + +0.9
1,326,248 + +0.7
1,326,249 - +0.1
1,326,249 - +0.5
1,326,249 - +0.2
1,326,547 + A4249_RS06515 0.16 -0.7
1,326,548 - A4249_RS06515 0.16 -0.2
1,326,548 - A4249_RS06515 0.16 -0.1
1,326,548 - A4249_RS06515 0.16 +0.5
1,326,615 + A4249_RS06515 0.19 -0.1
1,326,615 + A4249_RS06515 0.19 -0.2
1,326,616 - A4249_RS06515 0.19 +1.0
1,326,616 - A4249_RS06515 0.19 -1.0
1,326,616 - A4249_RS06515 0.19 -1.2
1,326,782 - A4249_RS06515 0.27 +0.2
1,326,845 - A4249_RS06515 0.30 -0.0
1,326,845 - A4249_RS06515 0.30 +0.6
1,326,845 - A4249_RS06515 0.30 +0.2
1,326,845 - A4249_RS06515 0.30 +0.0
1,326,871 - A4249_RS06515 0.31 -0.5
1,326,871 - A4249_RS06515 0.31 +0.5
1,326,997 + A4249_RS06515 0.37 -0.9
1,326,997 + A4249_RS06515 0.37 -1.3
1,326,997 + A4249_RS06515 0.37 -0.1
1,326,998 - A4249_RS06515 0.37 -0.5
1,326,998 - A4249_RS06515 0.37 -0.2
1,326,998 - A4249_RS06515 0.37 +0.2
1,326,998 - A4249_RS06515 0.37 -0.5
1,327,048 + A4249_RS06515 0.39 -0.7
1,327,048 + A4249_RS06515 0.39 +0.0
1,327,048 + A4249_RS06515 0.39 -0.1
1,327,049 - A4249_RS06515 0.39 -0.3
1,327,049 - A4249_RS06515 0.39 +0.9
1,327,049 - A4249_RS06515 0.39 -0.1
1,327,049 - A4249_RS06515 0.39 +0.7
1,327,049 - A4249_RS06515 0.39 +0.3
1,327,049 - A4249_RS06515 0.39 +0.4
1,327,049 - A4249_RS06515 0.39 -0.5
1,327,100 + A4249_RS06515 0.41 -0.0
1,327,100 + A4249_RS06515 0.41 +0.4
1,327,100 + A4249_RS06515 0.41 -0.0
1,327,100 + A4249_RS06515 0.41 -1.0
1,327,100 + A4249_RS06515 0.41 +0.9
1,327,100 + A4249_RS06515 0.41 -0.6
1,327,100 + A4249_RS06515 0.41 +0.5
1,327,100 + A4249_RS06515 0.41 -0.2
1,327,101 - A4249_RS06515 0.42 -1.9
1,327,101 - A4249_RS06515 0.42 -0.1
1,327,101 - A4249_RS06515 0.42 +0.6

Or see this region's nucleotide sequence