Experiment: Adenine 0.74 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS15080 and A4249_RS15090 are separated by 400 nucleotides A4249_RS15090 and A4249_RS15095 overlap by 4 nucleotides A4249_RS15095 and A4249_RS15100 are separated by 142 nucleotides
A4249_RS15080: A4249_RS15080 - DNA polymerase III subunit gamma/tau, at 3,050,782 to 3,052,629
_RS15080
A4249_RS15090: A4249_RS15090 - NAD(+) diphosphatase, at 3,053,030 to 3,053,950
_RS15090
A4249_RS15095: A4249_RS15095 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 3,053,947 to 3,054,669
_RS15095
A4249_RS15100: A4249_RS15100 - cytochrome c family protein, at 3,054,812 to 3,055,546
_RS15100
Position (kb)
3053
3054 Strain fitness (log2 ratio)
-1
0
1
2 at 3052.643 kb on - strand at 3052.643 kb on - strand at 3052.643 kb on - strand at 3052.744 kb on - strand at 3052.744 kb on - strand at 3052.869 kb on + strand at 3052.877 kb on + strand at 3052.877 kb on + strand at 3052.878 kb on - strand at 3052.878 kb on - strand at 3052.893 kb on + strand at 3052.893 kb on + strand at 3052.893 kb on + strand at 3052.894 kb on - strand at 3052.894 kb on - strand at 3053.019 kb on + strand at 3053.019 kb on + strand at 3053.019 kb on + strand at 3053.019 kb on + strand at 3053.019 kb on + strand at 3053.019 kb on + strand at 3053.019 kb on + strand at 3053.020 kb on - strand at 3053.020 kb on - strand at 3053.020 kb on - strand at 3053.020 kb on - strand at 3053.020 kb on - strand at 3053.020 kb on - strand at 3053.126 kb on + strand, within A4249_RS15090 at 3053.126 kb on + strand, within A4249_RS15090 at 3053.126 kb on + strand, within A4249_RS15090 at 3053.126 kb on + strand, within A4249_RS15090 at 3053.127 kb on - strand, within A4249_RS15090 at 3053.127 kb on - strand, within A4249_RS15090 at 3053.127 kb on - strand, within A4249_RS15090 at 3053.127 kb on - strand, within A4249_RS15090 at 3053.127 kb on - strand, within A4249_RS15090 at 3053.127 kb on - strand, within A4249_RS15090 at 3053.493 kb on + strand, within A4249_RS15090 at 3053.561 kb on - strand, within A4249_RS15090 at 3053.723 kb on + strand, within A4249_RS15090 at 3053.723 kb on + strand, within A4249_RS15090 at 3053.723 kb on + strand, within A4249_RS15090 at 3053.723 kb on + strand, within A4249_RS15090 at 3053.723 kb on + strand, within A4249_RS15090 at 3053.724 kb on - strand, within A4249_RS15090 at 3053.948 kb on + strand at 3053.949 kb on - strand at 3053.949 kb on - strand at 3054.756 kb on + strand at 3054.756 kb on + strand at 3054.756 kb on + strand at 3054.756 kb on + strand at 3054.756 kb on + strand at 3054.756 kb on + strand at 3054.757 kb on - strand at 3054.757 kb on - strand at 3054.757 kb on - strand at 3054.757 kb on - strand at 3054.757 kb on - strand at 3054.811 kb on + strand at 3054.811 kb on + strand at 3054.811 kb on + strand at 3054.812 kb on - strand at 3054.812 kb on - strand at 3054.826 kb on + strand at 3054.826 kb on + strand at 3054.826 kb on + strand at 3054.826 kb on + strand at 3054.826 kb on + strand at 3054.827 kb on - strand at 3054.827 kb on - strand at 3054.827 kb on - strand at 3054.827 kb on - strand at 3054.827 kb on - strand at 3054.905 kb on + strand, within A4249_RS15100 at 3054.905 kb on + strand, within A4249_RS15100 at 3054.905 kb on + strand, within A4249_RS15100 at 3054.905 kb on + strand, within A4249_RS15100 at 3054.906 kb on - strand, within A4249_RS15100 at 3054.906 kb on - strand, within A4249_RS15100 at 3054.906 kb on - strand, within A4249_RS15100 at 3054.906 kb on - strand, within A4249_RS15100 at 3054.906 kb on - strand, within A4249_RS15100 at 3054.935 kb on + strand, within A4249_RS15100 at 3054.936 kb on - strand, within A4249_RS15100 at 3054.936 kb on - strand, within A4249_RS15100 at 3054.936 kb on - strand, within A4249_RS15100 at 3054.936 kb on - strand, within A4249_RS15100 at 3054.936 kb on - strand, within A4249_RS15100 at 3054.936 kb on - strand, within A4249_RS15100
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C) remove 3,052,643 - -0.2 3,052,643 - +0.6 3,052,643 - -0.2 3,052,744 - +0.1 3,052,744 - -0.1 3,052,869 + +0.1 3,052,877 + -0.1 3,052,877 + +0.1 3,052,878 - -0.1 3,052,878 - +0.7 3,052,893 + +0.5 3,052,893 + -0.2 3,052,893 + -1.1 3,052,894 - -0.6 3,052,894 - -0.3 3,053,019 + +1.1 3,053,019 + +0.0 3,053,019 + +1.6 3,053,019 + -0.8 3,053,019 + -0.8 3,053,019 + +0.5 3,053,019 + +0.1 3,053,020 - -0.2 3,053,020 - -0.2 3,053,020 - +0.5 3,053,020 - -0.3 3,053,020 - -0.7 3,053,020 - +0.5 3,053,126 + A4249_RS15090 0.10 -0.4 3,053,126 + A4249_RS15090 0.10 +0.7 3,053,126 + A4249_RS15090 0.10 -0.3 3,053,126 + A4249_RS15090 0.10 -0.5 3,053,127 - A4249_RS15090 0.11 +1.6 3,053,127 - A4249_RS15090 0.11 -1.0 3,053,127 - A4249_RS15090 0.11 +0.3 3,053,127 - A4249_RS15090 0.11 -0.3 3,053,127 - A4249_RS15090 0.11 +0.4 3,053,127 - A4249_RS15090 0.11 +0.0 3,053,493 + A4249_RS15090 0.50 -0.5 3,053,561 - A4249_RS15090 0.58 +0.5 3,053,723 + A4249_RS15090 0.75 +0.3 3,053,723 + A4249_RS15090 0.75 -1.0 3,053,723 + A4249_RS15090 0.75 -0.3 3,053,723 + A4249_RS15090 0.75 +0.2 3,053,723 + A4249_RS15090 0.75 +1.0 3,053,724 - A4249_RS15090 0.75 +0.5 3,053,948 + -0.2 3,053,949 - -0.4 3,053,949 - -0.3 3,054,756 + -0.2 3,054,756 + -0.1 3,054,756 + +0.4 3,054,756 + +1.0 3,054,756 + -0.5 3,054,756 + +0.1 3,054,757 - -0.4 3,054,757 - +0.1 3,054,757 - -1.2 3,054,757 - -1.2 3,054,757 - +0.3 3,054,811 + -0.5 3,054,811 + -0.4 3,054,811 + +0.2 3,054,812 - +0.2 3,054,812 - +0.7 3,054,826 + -0.4 3,054,826 + -0.7 3,054,826 + +0.3 3,054,826 + +0.9 3,054,826 + +0.3 3,054,827 - -0.5 3,054,827 - -0.1 3,054,827 - +0.6 3,054,827 - +0.5 3,054,827 - -0.1 3,054,905 + A4249_RS15100 0.13 -1.2 3,054,905 + A4249_RS15100 0.13 +0.4 3,054,905 + A4249_RS15100 0.13 -0.8 3,054,905 + A4249_RS15100 0.13 +0.3 3,054,906 - A4249_RS15100 0.13 -0.4 3,054,906 - A4249_RS15100 0.13 -1.4 3,054,906 - A4249_RS15100 0.13 -0.3 3,054,906 - A4249_RS15100 0.13 +1.0 3,054,906 - A4249_RS15100 0.13 +1.6 3,054,935 + A4249_RS15100 0.17 -0.1 3,054,936 - A4249_RS15100 0.17 -0.1 3,054,936 - A4249_RS15100 0.17 +0.3 3,054,936 - A4249_RS15100 0.17 +1.8 3,054,936 - A4249_RS15100 0.17 +0.6 3,054,936 - A4249_RS15100 0.17 +0.2 3,054,936 - A4249_RS15100 0.17 +1.1
Or see this region's nucleotide sequence