Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15090

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15080 and A4249_RS15090 are separated by 400 nucleotidesA4249_RS15090 and A4249_RS15095 overlap by 4 nucleotidesA4249_RS15095 and A4249_RS15100 are separated by 142 nucleotides A4249_RS15080: A4249_RS15080 - DNA polymerase III subunit gamma/tau, at 3,050,782 to 3,052,629 _RS15080 A4249_RS15090: A4249_RS15090 - NAD(+) diphosphatase, at 3,053,030 to 3,053,950 _RS15090 A4249_RS15095: A4249_RS15095 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 3,053,947 to 3,054,669 _RS15095 A4249_RS15100: A4249_RS15100 - cytochrome c family protein, at 3,054,812 to 3,055,546 _RS15100 Position (kb) 3053 3054Strain fitness (log2 ratio) -1 0 1 2at 3052.643 kb on - strandat 3052.643 kb on - strandat 3052.643 kb on - strandat 3052.744 kb on - strandat 3052.744 kb on - strandat 3052.869 kb on + strandat 3052.877 kb on + strandat 3052.877 kb on + strandat 3052.878 kb on - strandat 3052.878 kb on - strandat 3052.893 kb on + strandat 3052.893 kb on + strandat 3052.893 kb on + strandat 3052.894 kb on - strandat 3052.894 kb on - strandat 3053.019 kb on + strandat 3053.019 kb on + strandat 3053.019 kb on + strandat 3053.019 kb on + strandat 3053.019 kb on + strandat 3053.019 kb on + strandat 3053.019 kb on + strandat 3053.020 kb on - strandat 3053.020 kb on - strandat 3053.020 kb on - strandat 3053.020 kb on - strandat 3053.020 kb on - strandat 3053.020 kb on - strandat 3053.126 kb on + strand, within A4249_RS15090at 3053.126 kb on + strand, within A4249_RS15090at 3053.126 kb on + strand, within A4249_RS15090at 3053.126 kb on + strand, within A4249_RS15090at 3053.127 kb on - strand, within A4249_RS15090at 3053.127 kb on - strand, within A4249_RS15090at 3053.127 kb on - strand, within A4249_RS15090at 3053.127 kb on - strand, within A4249_RS15090at 3053.127 kb on - strand, within A4249_RS15090at 3053.127 kb on - strand, within A4249_RS15090at 3053.493 kb on + strand, within A4249_RS15090at 3053.561 kb on - strand, within A4249_RS15090at 3053.723 kb on + strand, within A4249_RS15090at 3053.723 kb on + strand, within A4249_RS15090at 3053.723 kb on + strand, within A4249_RS15090at 3053.723 kb on + strand, within A4249_RS15090at 3053.723 kb on + strand, within A4249_RS15090at 3053.724 kb on - strand, within A4249_RS15090at 3053.948 kb on + strandat 3053.949 kb on - strandat 3053.949 kb on - strandat 3054.756 kb on + strandat 3054.756 kb on + strandat 3054.756 kb on + strandat 3054.756 kb on + strandat 3054.756 kb on + strandat 3054.756 kb on + strandat 3054.757 kb on - strandat 3054.757 kb on - strandat 3054.757 kb on - strandat 3054.757 kb on - strandat 3054.757 kb on - strandat 3054.811 kb on + strandat 3054.811 kb on + strandat 3054.811 kb on + strandat 3054.812 kb on - strandat 3054.812 kb on - strandat 3054.826 kb on + strandat 3054.826 kb on + strandat 3054.826 kb on + strandat 3054.826 kb on + strandat 3054.826 kb on + strandat 3054.827 kb on - strandat 3054.827 kb on - strandat 3054.827 kb on - strandat 3054.827 kb on - strandat 3054.827 kb on - strandat 3054.905 kb on + strand, within A4249_RS15100at 3054.905 kb on + strand, within A4249_RS15100at 3054.905 kb on + strand, within A4249_RS15100at 3054.905 kb on + strand, within A4249_RS15100at 3054.906 kb on - strand, within A4249_RS15100at 3054.906 kb on - strand, within A4249_RS15100at 3054.906 kb on - strand, within A4249_RS15100at 3054.906 kb on - strand, within A4249_RS15100at 3054.906 kb on - strand, within A4249_RS15100at 3054.935 kb on + strand, within A4249_RS15100at 3054.936 kb on - strand, within A4249_RS15100at 3054.936 kb on - strand, within A4249_RS15100at 3054.936 kb on - strand, within A4249_RS15100at 3054.936 kb on - strand, within A4249_RS15100at 3054.936 kb on - strand, within A4249_RS15100at 3054.936 kb on - strand, within A4249_RS15100

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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3,052,643 - -0.2
3,052,643 - +0.6
3,052,643 - -0.2
3,052,744 - +0.1
3,052,744 - -0.1
3,052,869 + +0.1
3,052,877 + -0.1
3,052,877 + +0.1
3,052,878 - -0.1
3,052,878 - +0.7
3,052,893 + +0.5
3,052,893 + -0.2
3,052,893 + -1.1
3,052,894 - -0.6
3,052,894 - -0.3
3,053,019 + +1.1
3,053,019 + +0.0
3,053,019 + +1.6
3,053,019 + -0.8
3,053,019 + -0.8
3,053,019 + +0.5
3,053,019 + +0.1
3,053,020 - -0.2
3,053,020 - -0.2
3,053,020 - +0.5
3,053,020 - -0.3
3,053,020 - -0.7
3,053,020 - +0.5
3,053,126 + A4249_RS15090 0.10 -0.4
3,053,126 + A4249_RS15090 0.10 +0.7
3,053,126 + A4249_RS15090 0.10 -0.3
3,053,126 + A4249_RS15090 0.10 -0.5
3,053,127 - A4249_RS15090 0.11 +1.6
3,053,127 - A4249_RS15090 0.11 -1.0
3,053,127 - A4249_RS15090 0.11 +0.3
3,053,127 - A4249_RS15090 0.11 -0.3
3,053,127 - A4249_RS15090 0.11 +0.4
3,053,127 - A4249_RS15090 0.11 +0.0
3,053,493 + A4249_RS15090 0.50 -0.5
3,053,561 - A4249_RS15090 0.58 +0.5
3,053,723 + A4249_RS15090 0.75 +0.3
3,053,723 + A4249_RS15090 0.75 -1.0
3,053,723 + A4249_RS15090 0.75 -0.3
3,053,723 + A4249_RS15090 0.75 +0.2
3,053,723 + A4249_RS15090 0.75 +1.0
3,053,724 - A4249_RS15090 0.75 +0.5
3,053,948 + -0.2
3,053,949 - -0.4
3,053,949 - -0.3
3,054,756 + -0.2
3,054,756 + -0.1
3,054,756 + +0.4
3,054,756 + +1.0
3,054,756 + -0.5
3,054,756 + +0.1
3,054,757 - -0.4
3,054,757 - +0.1
3,054,757 - -1.2
3,054,757 - -1.2
3,054,757 - +0.3
3,054,811 + -0.5
3,054,811 + -0.4
3,054,811 + +0.2
3,054,812 - +0.2
3,054,812 - +0.7
3,054,826 + -0.4
3,054,826 + -0.7
3,054,826 + +0.3
3,054,826 + +0.9
3,054,826 + +0.3
3,054,827 - -0.5
3,054,827 - -0.1
3,054,827 - +0.6
3,054,827 - +0.5
3,054,827 - -0.1
3,054,905 + A4249_RS15100 0.13 -1.2
3,054,905 + A4249_RS15100 0.13 +0.4
3,054,905 + A4249_RS15100 0.13 -0.8
3,054,905 + A4249_RS15100 0.13 +0.3
3,054,906 - A4249_RS15100 0.13 -0.4
3,054,906 - A4249_RS15100 0.13 -1.4
3,054,906 - A4249_RS15100 0.13 -0.3
3,054,906 - A4249_RS15100 0.13 +1.0
3,054,906 - A4249_RS15100 0.13 +1.6
3,054,935 + A4249_RS15100 0.17 -0.1
3,054,936 - A4249_RS15100 0.17 -0.1
3,054,936 - A4249_RS15100 0.17 +0.3
3,054,936 - A4249_RS15100 0.17 +1.8
3,054,936 - A4249_RS15100 0.17 +0.6
3,054,936 - A4249_RS15100 0.17 +0.2
3,054,936 - A4249_RS15100 0.17 +1.1

Or see this region's nucleotide sequence