Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15070

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15060 and A4249_RS15065 are separated by 80 nucleotidesA4249_RS15065 and A4249_RS15070 are separated by 44 nucleotidesA4249_RS15070 and A4249_RS15075 are separated by 87 nucleotidesA4249_RS15075 and A4249_RS15080 are separated by 9 nucleotides A4249_RS15060: A4249_RS15060 - polyhydroxyalkanoate depolymerase, at 3,046,647 to 3,047,927 _RS15060 A4249_RS15065: A4249_RS15065 - SCO family protein, at 3,048,008 to 3,048,631 _RS15065 A4249_RS15070: A4249_RS15070 - ActS/PrrB/RegB family redox-sensitive histidine kinase, at 3,048,676 to 3,050,130 _RS15070 A4249_RS15075: A4249_RS15075 - ActR/PrrA/RegA family redox response regulator transcription factor, at 3,050,218 to 3,050,772 _RS15075 A4249_RS15080: A4249_RS15080 - DNA polymerase III subunit gamma/tau, at 3,050,782 to 3,052,629 _RS15080 Position (kb) 3048 3049 3050 3051Strain fitness (log2 ratio) -2 -1 0 1 2at 3047.797 kb on + strand, within A4249_RS15060at 3047.798 kb on - strand, within A4249_RS15060at 3047.798 kb on - strand, within A4249_RS15060at 3047.900 kb on - strandat 3047.920 kb on + strandat 3047.920 kb on + strandat 3047.920 kb on + strandat 3047.920 kb on + strandat 3047.921 kb on - strandat 3047.921 kb on - strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3047.970 kb on - strandat 3047.970 kb on - strandat 3047.970 kb on - strandat 3047.970 kb on - strandat 3047.970 kb on - strandat 3047.970 kb on - strandat 3047.970 kb on - strandat 3047.970 kb on - strandat 3047.970 kb on - strandat 3047.970 kb on - strandat 3047.970 kb on - strandat 3047.970 kb on - strandat 3047.970 kb on - strandat 3047.970 kb on - strandat 3047.970 kb on - strandat 3047.970 kb on - strandat 3047.971 kb on + strandat 3047.971 kb on + strandat 3047.971 kb on + strandat 3047.971 kb on + strandat 3047.971 kb on + strandat 3047.971 kb on + strandat 3047.971 kb on + strandat 3047.971 kb on + strandat 3047.971 kb on + strandat 3047.971 kb on + strandat 3047.971 kb on + strandat 3047.971 kb on + strandat 3047.971 kb on - strandat 3047.972 kb on - strandat 3047.972 kb on - strandat 3047.972 kb on - strandat 3047.972 kb on - strandat 3047.972 kb on - strandat 3047.972 kb on - strandat 3047.972 kb on - strandat 3047.972 kb on - strandat 3047.972 kb on - strandat 3047.972 kb on - strandat 3047.972 kb on - strandat 3047.972 kb on - strandat 3047.972 kb on - strandat 3047.972 kb on - strandat 3047.972 kb on - strandat 3047.972 kb on - strandat 3047.995 kb on + strandat 3047.996 kb on - strandat 3047.996 kb on - strandat 3048.066 kb on + strandat 3048.108 kb on + strand, within A4249_RS15065at 3048.108 kb on + strand, within A4249_RS15065at 3048.109 kb on - strand, within A4249_RS15065at 3048.109 kb on - strand, within A4249_RS15065at 3048.109 kb on - strand, within A4249_RS15065at 3048.133 kb on + strand, within A4249_RS15065at 3048.133 kb on + strand, within A4249_RS15065at 3048.133 kb on + strand, within A4249_RS15065at 3048.133 kb on + strand, within A4249_RS15065at 3048.133 kb on + strand, within A4249_RS15065at 3048.135 kb on + strand, within A4249_RS15065at 3048.135 kb on + strand, within A4249_RS15065at 3048.135 kb on + strand, within A4249_RS15065at 3048.135 kb on + strand, within A4249_RS15065at 3048.136 kb on - strand, within A4249_RS15065at 3048.136 kb on - strand, within A4249_RS15065at 3048.162 kb on + strand, within A4249_RS15065at 3048.162 kb on + strand, within A4249_RS15065at 3048.162 kb on + strand, within A4249_RS15065at 3048.163 kb on - strand, within A4249_RS15065at 3048.255 kb on + strand, within A4249_RS15065at 3048.255 kb on + strand, within A4249_RS15065at 3048.255 kb on + strand, within A4249_RS15065at 3048.255 kb on + strand, within A4249_RS15065at 3048.255 kb on + strand, within A4249_RS15065at 3048.256 kb on - strand, within A4249_RS15065at 3048.256 kb on - strand, within A4249_RS15065at 3048.393 kb on + strand, within A4249_RS15065at 3048.393 kb on + strand, within A4249_RS15065at 3048.393 kb on + strand, within A4249_RS15065at 3048.393 kb on + strand, within A4249_RS15065at 3048.393 kb on + strand, within A4249_RS15065at 3048.393 kb on + strand, within A4249_RS15065at 3048.393 kb on + strand, within A4249_RS15065at 3048.664 kb on + strandat 3048.664 kb on + strandat 3048.664 kb on + strandat 3048.664 kb on + strandat 3048.664 kb on + strandat 3048.665 kb on - strandat 3048.665 kb on - strandat 3048.665 kb on - strandat 3048.666 kb on + strandat 3048.666 kb on + strandat 3048.666 kb on + strandat 3048.666 kb on + strandat 3048.666 kb on + strandat 3048.666 kb on + strandat 3048.666 kb on + strandat 3048.666 kb on + strandat 3048.666 kb on + strandat 3048.666 kb on + strandat 3048.667 kb on - strandat 3048.667 kb on - strandat 3048.667 kb on - strandat 3048.667 kb on - strandat 3048.667 kb on - strandat 3048.667 kb on - strandat 3048.667 kb on - strandat 3048.667 kb on - strandat 3048.667 kb on - strandat 3048.667 kb on - strandat 3048.667 kb on - strandat 3048.667 kb on - strandat 3048.667 kb on - strandat 3048.667 kb on - strandat 3048.667 kb on - strandat 3048.667 kb on - strandat 3048.667 kb on - strandat 3049.109 kb on + strand, within A4249_RS15070at 3049.109 kb on + strand, within A4249_RS15070at 3049.109 kb on + strand, within A4249_RS15070at 3049.109 kb on + strand, within A4249_RS15070at 3049.110 kb on - strand, within A4249_RS15070at 3049.110 kb on - strand, within A4249_RS15070at 3049.110 kb on - strand, within A4249_RS15070at 3049.110 kb on - strand, within A4249_RS15070at 3049.210 kb on + strand, within A4249_RS15070at 3049.211 kb on - strand, within A4249_RS15070at 3049.211 kb on - strand, within A4249_RS15070at 3049.211 kb on - strand, within A4249_RS15070at 3049.264 kb on + strand, within A4249_RS15070at 3049.559 kb on - strand, within A4249_RS15070at 3049.559 kb on - strand, within A4249_RS15070at 3049.849 kb on + strand, within A4249_RS15070at 3049.849 kb on + strand, within A4249_RS15070at 3049.849 kb on + strand, within A4249_RS15070at 3049.849 kb on + strand, within A4249_RS15070at 3049.850 kb on - strand, within A4249_RS15070at 3049.850 kb on - strand, within A4249_RS15070at 3049.850 kb on - strand, within A4249_RS15070at 3050.548 kb on + strand, within A4249_RS15075at 3050.548 kb on + strand, within A4249_RS15075at 3050.548 kb on + strand, within A4249_RS15075at 3050.549 kb on - strand, within A4249_RS15075at 3050.549 kb on - strand, within A4249_RS15075at 3050.549 kb on - strand, within A4249_RS15075at 3050.661 kb on + strand, within A4249_RS15075at 3050.661 kb on + strand, within A4249_RS15075at 3050.661 kb on + strand, within A4249_RS15075at 3050.661 kb on + strand, within A4249_RS15075at 3050.661 kb on + strand, within A4249_RS15075at 3050.661 kb on + strand, within A4249_RS15075at 3050.661 kb on + strand, within A4249_RS15075at 3050.661 kb on + strand, within A4249_RS15075at 3050.661 kb on + strand, within A4249_RS15075at 3050.662 kb on - strand, within A4249_RS15075at 3050.662 kb on - strand, within A4249_RS15075at 3050.662 kb on - strand, within A4249_RS15075at 3050.662 kb on - strand, within A4249_RS15075at 3050.662 kb on - strand, within A4249_RS15075at 3050.662 kb on - strand, within A4249_RS15075at 3050.662 kb on - strand, within A4249_RS15075at 3050.662 kb on - strand, within A4249_RS15075at 3050.662 kb on - strand, within A4249_RS15075at 3050.662 kb on - strand, within A4249_RS15075at 3050.674 kb on + strand, within A4249_RS15075

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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3,047,797 + A4249_RS15060 0.90 -0.4
3,047,798 - A4249_RS15060 0.90 +0.9
3,047,798 - A4249_RS15060 0.90 +0.2
3,047,900 - -0.7
3,047,920 + -0.5
3,047,920 + +0.0
3,047,920 + -0.5
3,047,920 + +0.7
3,047,921 - -0.9
3,047,921 - -0.6
3,047,969 + -1.0
3,047,969 + +0.2
3,047,969 + +0.6
3,047,969 + -0.2
3,047,969 + +0.2
3,047,969 + -0.3
3,047,969 + -1.4
3,047,969 + +0.8
3,047,969 + +0.1
3,047,969 + +0.0
3,047,969 + -1.7
3,047,969 + +0.1
3,047,969 + -0.6
3,047,969 + -0.9
3,047,969 + +0.3
3,047,969 + -0.7
3,047,969 + +0.1
3,047,969 + +0.3
3,047,969 + +0.3
3,047,969 + -2.7
3,047,969 + +0.3
3,047,969 + +0.5
3,047,969 + +0.5
3,047,969 + -2.5
3,047,969 + +0.3
3,047,969 + -0.1
3,047,970 - -0.5
3,047,970 - -0.2
3,047,970 - -0.7
3,047,970 - -0.0
3,047,970 - -0.5
3,047,970 - +0.8
3,047,970 - -0.0
3,047,970 - +0.1
3,047,970 - -0.2
3,047,970 - -1.4
3,047,970 - +1.2
3,047,970 - +0.1
3,047,970 - +0.5
3,047,970 - +0.7
3,047,970 - +0.8
3,047,970 - -0.3
3,047,971 + +0.1
3,047,971 + +0.1
3,047,971 + -0.0
3,047,971 + +0.0
3,047,971 + +0.0
3,047,971 + +0.3
3,047,971 + +0.6
3,047,971 + +0.4
3,047,971 + -0.4
3,047,971 + +0.7
3,047,971 + -1.4
3,047,971 + +0.2
3,047,971 - -1.1
3,047,972 - +0.1
3,047,972 - +0.2
3,047,972 - +0.7
3,047,972 - +0.5
3,047,972 - +0.0
3,047,972 - +0.1
3,047,972 - +0.2
3,047,972 - -0.6
3,047,972 - -0.1
3,047,972 - -0.4
3,047,972 - -0.1
3,047,972 - -0.0
3,047,972 - +0.1
3,047,972 - -0.4
3,047,972 - +0.4
3,047,972 - -0.2
3,047,995 + -0.1
3,047,996 - +0.5
3,047,996 - +0.3
3,048,066 + -0.4
3,048,108 + A4249_RS15065 0.16 -0.2
3,048,108 + A4249_RS15065 0.16 -0.5
3,048,109 - A4249_RS15065 0.16 -0.1
3,048,109 - A4249_RS15065 0.16 -0.6
3,048,109 - A4249_RS15065 0.16 -0.5
3,048,133 + A4249_RS15065 0.20 -0.9
3,048,133 + A4249_RS15065 0.20 -0.5
3,048,133 + A4249_RS15065 0.20 -0.5
3,048,133 + A4249_RS15065 0.20 +0.1
3,048,133 + A4249_RS15065 0.20 -0.5
3,048,135 + A4249_RS15065 0.20 -0.2
3,048,135 + A4249_RS15065 0.20 -0.7
3,048,135 + A4249_RS15065 0.20 -0.2
3,048,135 + A4249_RS15065 0.20 -0.6
3,048,136 - A4249_RS15065 0.21 +0.3
3,048,136 - A4249_RS15065 0.21 -0.5
3,048,162 + A4249_RS15065 0.25 +0.1
3,048,162 + A4249_RS15065 0.25 -0.6
3,048,162 + A4249_RS15065 0.25 -0.3
3,048,163 - A4249_RS15065 0.25 -0.6
3,048,255 + A4249_RS15065 0.40 +1.0
3,048,255 + A4249_RS15065 0.40 -0.1
3,048,255 + A4249_RS15065 0.40 +0.8
3,048,255 + A4249_RS15065 0.40 +0.4
3,048,255 + A4249_RS15065 0.40 -0.6
3,048,256 - A4249_RS15065 0.40 +0.5
3,048,256 - A4249_RS15065 0.40 -0.5
3,048,393 + A4249_RS15065 0.62 +0.2
3,048,393 + A4249_RS15065 0.62 +0.0
3,048,393 + A4249_RS15065 0.62 +0.4
3,048,393 + A4249_RS15065 0.62 +0.0
3,048,393 + A4249_RS15065 0.62 -0.0
3,048,393 + A4249_RS15065 0.62 +0.3
3,048,393 + A4249_RS15065 0.62 -0.0
3,048,664 + -0.4
3,048,664 + -1.1
3,048,664 + -0.0
3,048,664 + -0.4
3,048,664 + +1.6
3,048,665 - -0.1
3,048,665 - -0.5
3,048,665 - +0.3
3,048,666 + +0.1
3,048,666 + +0.3
3,048,666 + -0.5
3,048,666 + +0.2
3,048,666 + +0.5
3,048,666 + -0.2
3,048,666 + -0.7
3,048,666 + -0.3
3,048,666 + +0.1
3,048,666 + -0.6
3,048,667 - -1.0
3,048,667 - -0.8
3,048,667 - -0.1
3,048,667 - +0.3
3,048,667 - +0.1
3,048,667 - -1.1
3,048,667 - +0.1
3,048,667 - -0.8
3,048,667 - -0.3
3,048,667 - -0.6
3,048,667 - +0.1
3,048,667 - -0.8
3,048,667 - +1.8
3,048,667 - +0.1
3,048,667 - -0.2
3,048,667 - +0.9
3,048,667 - -0.0
3,049,109 + A4249_RS15070 0.30 -0.3
3,049,109 + A4249_RS15070 0.30 -0.3
3,049,109 + A4249_RS15070 0.30 -0.5
3,049,109 + A4249_RS15070 0.30 -0.0
3,049,110 - A4249_RS15070 0.30 -0.3
3,049,110 - A4249_RS15070 0.30 -0.4
3,049,110 - A4249_RS15070 0.30 -0.2
3,049,110 - A4249_RS15070 0.30 -0.2
3,049,210 + A4249_RS15070 0.37 -0.1
3,049,211 - A4249_RS15070 0.37 -0.3
3,049,211 - A4249_RS15070 0.37 -0.0
3,049,211 - A4249_RS15070 0.37 +0.1
3,049,264 + A4249_RS15070 0.40 +0.0
3,049,559 - A4249_RS15070 0.61 -0.2
3,049,559 - A4249_RS15070 0.61 +0.2
3,049,849 + A4249_RS15070 0.81 -0.1
3,049,849 + A4249_RS15070 0.81 -0.0
3,049,849 + A4249_RS15070 0.81 -0.1
3,049,849 + A4249_RS15070 0.81 -0.2
3,049,850 - A4249_RS15070 0.81 -0.2
3,049,850 - A4249_RS15070 0.81 -0.1
3,049,850 - A4249_RS15070 0.81 -0.2
3,050,548 + A4249_RS15075 0.59 +0.1
3,050,548 + A4249_RS15075 0.59 -0.4
3,050,548 + A4249_RS15075 0.59 -0.6
3,050,549 - A4249_RS15075 0.60 +0.1
3,050,549 - A4249_RS15075 0.60 +0.4
3,050,549 - A4249_RS15075 0.60 +0.4
3,050,661 + A4249_RS15075 0.80 +0.9
3,050,661 + A4249_RS15075 0.80 +0.5
3,050,661 + A4249_RS15075 0.80 -0.1
3,050,661 + A4249_RS15075 0.80 -0.3
3,050,661 + A4249_RS15075 0.80 +0.2
3,050,661 + A4249_RS15075 0.80 -0.3
3,050,661 + A4249_RS15075 0.80 -0.5
3,050,661 + A4249_RS15075 0.80 +1.1
3,050,661 + A4249_RS15075 0.80 -0.4
3,050,662 - A4249_RS15075 0.80 +0.1
3,050,662 - A4249_RS15075 0.80 -0.1
3,050,662 - A4249_RS15075 0.80 -0.1
3,050,662 - A4249_RS15075 0.80 +0.6
3,050,662 - A4249_RS15075 0.80 -0.1
3,050,662 - A4249_RS15075 0.80 +0.7
3,050,662 - A4249_RS15075 0.80 +1.0
3,050,662 - A4249_RS15075 0.80 -1.9
3,050,662 - A4249_RS15075 0.80 -0.2
3,050,662 - A4249_RS15075 0.80 +0.2
3,050,674 + A4249_RS15075 0.82 +1.0

Or see this region's nucleotide sequence