Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14980

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14970 and A4249_RS14975 are separated by 68 nucleotidesA4249_RS14975 and A4249_RS14980 are separated by 47 nucleotidesA4249_RS14980 and A4249_RS14985 overlap by 1 nucleotides A4249_RS14970: A4249_RS14970 - phasin, at 3,028,962 to 3,029,360 _RS14970 A4249_RS14975: A4249_RS14975 - creatininase family protein, at 3,029,429 to 3,030,202 _RS14975 A4249_RS14980: A4249_RS14980 - TetR/AcrR family transcriptional regulator, at 3,030,250 to 3,030,867 _RS14980 A4249_RS14985: A4249_RS14985 - DHA2 family efflux MFS transporter permease subunit, at 3,030,867 to 3,032,402 _RS14985 Position (kb) 3030 3031Strain fitness (log2 ratio) -1 0 1at 3029.629 kb on - strand, within A4249_RS14975at 3029.629 kb on - strand, within A4249_RS14975at 3029.629 kb on - strand, within A4249_RS14975at 3029.874 kb on + strand, within A4249_RS14975at 3029.874 kb on + strand, within A4249_RS14975at 3029.874 kb on + strand, within A4249_RS14975at 3029.875 kb on - strand, within A4249_RS14975at 3029.998 kb on + strand, within A4249_RS14975at 3029.999 kb on - strand, within A4249_RS14975at 3029.999 kb on - strand, within A4249_RS14975at 3030.116 kb on + strand, within A4249_RS14975at 3030.116 kb on + strand, within A4249_RS14975at 3030.117 kb on - strand, within A4249_RS14975at 3030.117 kb on - strand, within A4249_RS14975at 3030.237 kb on + strandat 3030.238 kb on - strandat 3030.506 kb on + strand, within A4249_RS14980at 3030.506 kb on + strand, within A4249_RS14980at 3030.506 kb on + strand, within A4249_RS14980at 3030.506 kb on + strand, within A4249_RS14980at 3030.506 kb on + strand, within A4249_RS14980at 3030.507 kb on - strand, within A4249_RS14980at 3030.507 kb on - strand, within A4249_RS14980at 3030.507 kb on - strand, within A4249_RS14980at 3030.507 kb on - strand, within A4249_RS14980at 3030.507 kb on - strand, within A4249_RS14980at 3030.507 kb on - strand, within A4249_RS14980at 3030.507 kb on - strand, within A4249_RS14980at 3030.507 kb on - strand, within A4249_RS14980at 3030.663 kb on + strand, within A4249_RS14980at 3030.724 kb on - strand, within A4249_RS14980at 3030.725 kb on + strand, within A4249_RS14980at 3030.725 kb on + strand, within A4249_RS14980at 3030.725 kb on + strand, within A4249_RS14980at 3030.725 kb on + strand, within A4249_RS14980at 3030.726 kb on - strand, within A4249_RS14980at 3030.726 kb on - strand, within A4249_RS14980at 3030.726 kb on - strand, within A4249_RS14980at 3030.726 kb on - strand, within A4249_RS14980at 3030.726 kb on - strand, within A4249_RS14980at 3030.726 kb on - strand, within A4249_RS14980at 3030.726 kb on - strand, within A4249_RS14980at 3030.726 kb on - strand, within A4249_RS14980at 3031.015 kb on + strandat 3031.015 kb on + strandat 3031.015 kb on + strandat 3031.015 kb on + strandat 3031.015 kb on + strandat 3031.015 kb on + strandat 3031.015 kb on + strandat 3031.015 kb on + strandat 3031.015 kb on + strandat 3031.015 kb on + strandat 3031.015 kb on + strandat 3031.015 kb on + strandat 3031.015 kb on + strandat 3031.015 kb on + strandat 3031.015 kb on + strandat 3031.016 kb on - strandat 3031.016 kb on - strandat 3031.016 kb on - strandat 3031.016 kb on - strandat 3031.016 kb on - strandat 3031.016 kb on - strandat 3031.016 kb on - strandat 3031.016 kb on - strandat 3031.016 kb on - strandat 3031.016 kb on - strandat 3031.295 kb on + strand, within A4249_RS14985at 3031.296 kb on - strand, within A4249_RS14985at 3031.516 kb on + strand, within A4249_RS14985at 3031.516 kb on + strand, within A4249_RS14985at 3031.516 kb on + strand, within A4249_RS14985at 3031.654 kb on + strand, within A4249_RS14985at 3031.654 kb on + strand, within A4249_RS14985at 3031.654 kb on + strand, within A4249_RS14985at 3031.655 kb on - strand, within A4249_RS14985

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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3,029,629 - A4249_RS14975 0.26 -0.4
3,029,629 - A4249_RS14975 0.26 +0.1
3,029,629 - A4249_RS14975 0.26 -0.7
3,029,874 + A4249_RS14975 0.57 +0.5
3,029,874 + A4249_RS14975 0.57 -1.0
3,029,874 + A4249_RS14975 0.57 +0.1
3,029,875 - A4249_RS14975 0.58 +0.8
3,029,998 + A4249_RS14975 0.74 -0.4
3,029,999 - A4249_RS14975 0.74 -0.2
3,029,999 - A4249_RS14975 0.74 +1.2
3,030,116 + A4249_RS14975 0.89 -0.3
3,030,116 + A4249_RS14975 0.89 -0.0
3,030,117 - A4249_RS14975 0.89 -1.1
3,030,117 - A4249_RS14975 0.89 +0.3
3,030,237 + -0.3
3,030,238 - +0.1
3,030,506 + A4249_RS14980 0.41 -0.5
3,030,506 + A4249_RS14980 0.41 +0.8
3,030,506 + A4249_RS14980 0.41 +1.1
3,030,506 + A4249_RS14980 0.41 +1.1
3,030,506 + A4249_RS14980 0.41 +1.3
3,030,507 - A4249_RS14980 0.42 +0.8
3,030,507 - A4249_RS14980 0.42 -0.6
3,030,507 - A4249_RS14980 0.42 +0.9
3,030,507 - A4249_RS14980 0.42 -0.2
3,030,507 - A4249_RS14980 0.42 +0.7
3,030,507 - A4249_RS14980 0.42 +0.2
3,030,507 - A4249_RS14980 0.42 +0.5
3,030,507 - A4249_RS14980 0.42 +0.6
3,030,663 + A4249_RS14980 0.67 +1.4
3,030,724 - A4249_RS14980 0.77 +0.1
3,030,725 + A4249_RS14980 0.77 +0.8
3,030,725 + A4249_RS14980 0.77 +0.8
3,030,725 + A4249_RS14980 0.77 +1.5
3,030,725 + A4249_RS14980 0.77 +0.1
3,030,726 - A4249_RS14980 0.77 +0.4
3,030,726 - A4249_RS14980 0.77 -0.9
3,030,726 - A4249_RS14980 0.77 -0.0
3,030,726 - A4249_RS14980 0.77 +1.2
3,030,726 - A4249_RS14980 0.77 +0.2
3,030,726 - A4249_RS14980 0.77 +0.2
3,030,726 - A4249_RS14980 0.77 +0.0
3,030,726 - A4249_RS14980 0.77 +0.4
3,031,015 + +0.6
3,031,015 + +0.1
3,031,015 + +0.6
3,031,015 + -0.5
3,031,015 + -0.0
3,031,015 + -0.2
3,031,015 + +0.4
3,031,015 + -0.2
3,031,015 + +1.1
3,031,015 + +0.3
3,031,015 + +1.1
3,031,015 + -0.4
3,031,015 + -0.6
3,031,015 + -0.7
3,031,015 + -0.3
3,031,016 - -1.1
3,031,016 - -0.0
3,031,016 - -0.1
3,031,016 - +0.2
3,031,016 - -0.1
3,031,016 - +0.3
3,031,016 - -0.8
3,031,016 - +0.7
3,031,016 - +0.5
3,031,016 - -0.1
3,031,295 + A4249_RS14985 0.28 -1.3
3,031,296 - A4249_RS14985 0.28 +0.1
3,031,516 + A4249_RS14985 0.42 -0.1
3,031,516 + A4249_RS14985 0.42 +1.0
3,031,516 + A4249_RS14985 0.42 -0.5
3,031,654 + A4249_RS14985 0.51 -0.1
3,031,654 + A4249_RS14985 0.51 -1.4
3,031,654 + A4249_RS14985 0.51 +0.3
3,031,655 - A4249_RS14985 0.51 +0.9

Or see this region's nucleotide sequence