Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14670

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14660 and A4249_RS14665 are separated by 49 nucleotidesA4249_RS14665 and A4249_RS14670 are separated by 83 nucleotidesA4249_RS14670 and A4249_RS14675 are separated by 7 nucleotidesA4249_RS14675 and A4249_RS14680 are separated by 130 nucleotides A4249_RS14660: A4249_RS14660 - hypothetical protein, at 2,969,257 to 2,970,393 _RS14660 A4249_RS14665: A4249_RS14665 - orotidine-5'-phosphate decarboxylase, at 2,970,443 to 2,971,171 _RS14665 A4249_RS14670: A4249_RS14670 - MarC family protein, at 2,971,255 to 2,971,950 _RS14670 A4249_RS14675: A4249_RS14675 - metallopeptidase family protein, at 2,971,958 to 2,972,356 _RS14675 A4249_RS14680: A4249_RS14680 - PAS domain-containing sensor histidine kinase, at 2,972,487 to 2,974,808 _RS14680 Position (kb) 2971 2972Strain fitness (log2 ratio) -1 0 1at 2970.304 kb on + strandat 2970.305 kb on - strandat 2970.305 kb on - strandat 2970.307 kb on + strandat 2970.307 kb on + strandat 2970.307 kb on + strandat 2970.307 kb on + strandat 2971.926 kb on + strandat 2971.927 kb on - strandat 2971.949 kb on - strandat 2972.103 kb on + strand, within A4249_RS14675at 2972.172 kb on + strand, within A4249_RS14675at 2972.172 kb on + strand, within A4249_RS14675at 2972.172 kb on + strand, within A4249_RS14675at 2972.172 kb on + strand, within A4249_RS14675at 2972.172 kb on + strand, within A4249_RS14675at 2972.172 kb on + strand, within A4249_RS14675at 2972.172 kb on + strand, within A4249_RS14675at 2972.173 kb on - strand, within A4249_RS14675at 2972.173 kb on - strand, within A4249_RS14675at 2972.173 kb on - strand, within A4249_RS14675at 2972.173 kb on - strand, within A4249_RS14675at 2972.173 kb on - strand, within A4249_RS14675at 2972.183 kb on + strand, within A4249_RS14675at 2972.344 kb on + strandat 2972.345 kb on - strandat 2972.443 kb on + strandat 2972.443 kb on + strandat 2972.443 kb on + strandat 2972.444 kb on - strandat 2972.444 kb on - strandat 2972.444 kb on - strandat 2972.444 kb on - strandat 2972.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,970,304 + -0.4
2,970,305 - -0.2
2,970,305 - +0.1
2,970,307 + -0.4
2,970,307 + -1.0
2,970,307 + +0.0
2,970,307 + +0.3
2,971,926 + -1.0
2,971,927 - +1.0
2,971,949 - -0.5
2,972,103 + A4249_RS14675 0.36 -0.7
2,972,172 + A4249_RS14675 0.54 +0.5
2,972,172 + A4249_RS14675 0.54 -0.9
2,972,172 + A4249_RS14675 0.54 +0.8
2,972,172 + A4249_RS14675 0.54 -0.0
2,972,172 + A4249_RS14675 0.54 +0.8
2,972,172 + A4249_RS14675 0.54 +0.5
2,972,172 + A4249_RS14675 0.54 -0.4
2,972,173 - A4249_RS14675 0.54 +0.6
2,972,173 - A4249_RS14675 0.54 +0.6
2,972,173 - A4249_RS14675 0.54 -0.4
2,972,173 - A4249_RS14675 0.54 -0.6
2,972,173 - A4249_RS14675 0.54 -0.1
2,972,183 + A4249_RS14675 0.56 -0.2
2,972,344 + -0.3
2,972,345 - +0.0
2,972,443 + -0.0
2,972,443 + -0.3
2,972,443 + -0.4
2,972,444 - -0.7
2,972,444 - -0.1
2,972,444 - -0.3
2,972,444 - +0.2
2,972,444 - -0.7

Or see this region's nucleotide sequence