Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14575

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS14570 and A4249_RS14575 are separated by 84 nucleotidesA4249_RS14575 and A4249_RS14580 are separated by 6 nucleotidesA4249_RS14580 and A4249_RS14585 are separated by 99 nucleotides A4249_RS14570: A4249_RS14570 - complex I NDUFA9 subunit family protein, at 2,950,713 to 2,951,690 _RS14570 A4249_RS14575: A4249_RS14575 - DNA helicase RecQ, at 2,951,775 to 2,953,652 _RS14575 A4249_RS14580: A4249_RS14580 - hypothetical protein, at 2,953,659 to 2,954,135 _RS14580 A4249_RS14585: A4249_RS14585 - glucose-6-phosphate isomerase, at 2,954,235 to 2,955,854 _RS14585 Position (kb) 2951 2952 2953 2954Strain fitness (log2 ratio) -1 0 1at 2951.109 kb on + strand, within A4249_RS14570at 2951.109 kb on + strand, within A4249_RS14570at 2951.110 kb on - strand, within A4249_RS14570at 2951.110 kb on - strand, within A4249_RS14570at 2951.110 kb on - strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.383 kb on - strand, within A4249_RS14570at 2951.637 kb on + strandat 2951.637 kb on + strandat 2951.637 kb on + strandat 2951.637 kb on + strandat 2951.637 kb on + strandat 2951.637 kb on + strandat 2951.637 kb on + strandat 2951.637 kb on + strandat 2951.638 kb on - strandat 2951.638 kb on - strandat 2951.638 kb on - strandat 2951.688 kb on + strandat 2951.688 kb on + strandat 2951.688 kb on + strandat 2951.689 kb on - strandat 2951.689 kb on - strandat 2951.701 kb on + strandat 2951.702 kb on - strandat 2951.702 kb on - strandat 2951.702 kb on - strandat 2951.770 kb on + strandat 2951.771 kb on - strandat 2951.811 kb on - strandat 2951.961 kb on + strandat 2951.961 kb on + strandat 2951.962 kb on - strandat 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.531 kb on + strand, within A4249_RS14575at 2952.531 kb on + strand, within A4249_RS14575at 2952.532 kb on - strand, within A4249_RS14575at 2952.532 kb on - strand, within A4249_RS14575at 2952.532 kb on - strand, within A4249_RS14575at 2952.603 kb on + strand, within A4249_RS14575at 2952.765 kb on + strand, within A4249_RS14575at 2952.765 kb on + strand, within A4249_RS14575at 2952.765 kb on + strand, within A4249_RS14575at 2952.765 kb on + strand, within A4249_RS14575at 2952.766 kb on - strand, within A4249_RS14575at 2952.825 kb on + strand, within A4249_RS14575at 2952.825 kb on + strand, within A4249_RS14575at 2952.825 kb on + strand, within A4249_RS14575at 2952.826 kb on - strand, within A4249_RS14575at 2952.826 kb on - strand, within A4249_RS14575at 2952.826 kb on - strand, within A4249_RS14575at 2952.826 kb on - strand, within A4249_RS14575at 2952.972 kb on + strand, within A4249_RS14575at 2952.973 kb on - strand, within A4249_RS14575at 2952.973 kb on - strand, within A4249_RS14575at 2953.038 kb on + strand, within A4249_RS14575at 2953.038 kb on + strand, within A4249_RS14575at 2953.038 kb on + strand, within A4249_RS14575at 2953.038 kb on + strand, within A4249_RS14575at 2953.038 kb on + strand, within A4249_RS14575at 2953.039 kb on - strand, within A4249_RS14575at 2953.039 kb on - strand, within A4249_RS14575at 2953.039 kb on - strand, within A4249_RS14575at 2953.506 kb on + strandat 2953.506 kb on + strandat 2953.506 kb on + strandat 2953.507 kb on - strandat 2953.507 kb on - strandat 2953.507 kb on - strandat 2953.507 kb on - strandat 2953.507 kb on - strandat 2953.507 kb on - strandat 2953.507 kb on - strandat 2953.507 kb on - strandat 2953.650 kb on + strandat 2953.650 kb on + strandat 2953.650 kb on + strandat 2953.651 kb on - strandat 2953.714 kb on + strand, within A4249_RS14580at 2953.714 kb on + strand, within A4249_RS14580at 2953.714 kb on + strand, within A4249_RS14580at 2953.714 kb on + strand, within A4249_RS14580at 2953.714 kb on + strand, within A4249_RS14580at 2953.714 kb on + strand, within A4249_RS14580at 2953.715 kb on - strand, within A4249_RS14580at 2954.182 kb on + strandat 2954.195 kb on + strandat 2954.364 kb on + strandat 2954.365 kb on - strandat 2954.506 kb on + strand, within A4249_RS14585at 2954.507 kb on - strand, within A4249_RS14585at 2954.507 kb on - strand, within A4249_RS14585at 2954.507 kb on - strand, within A4249_RS14585at 2954.507 kb on - strand, within A4249_RS14585at 2954.604 kb on + strand, within A4249_RS14585at 2954.604 kb on + strand, within A4249_RS14585at 2954.604 kb on + strand, within A4249_RS14585at 2954.605 kb on - strand, within A4249_RS14585at 2954.605 kb on - strand, within A4249_RS14585at 2954.605 kb on - strand, within A4249_RS14585at 2954.605 kb on - strand, within A4249_RS14585

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
2,951,109 + A4249_RS14570 0.40 +0.1
2,951,109 + A4249_RS14570 0.40 -1.2
2,951,110 - A4249_RS14570 0.41 +0.2
2,951,110 - A4249_RS14570 0.41 +0.1
2,951,110 - A4249_RS14570 0.41 -0.1
2,951,292 + A4249_RS14570 0.59 -0.5
2,951,292 + A4249_RS14570 0.59 -0.4
2,951,292 + A4249_RS14570 0.59 -0.0
2,951,292 + A4249_RS14570 0.59 -0.6
2,951,292 + A4249_RS14570 0.59 +0.1
2,951,292 + A4249_RS14570 0.59 +0.2
2,951,292 + A4249_RS14570 0.59 -0.4
2,951,292 + A4249_RS14570 0.59 -0.2
2,951,292 + A4249_RS14570 0.59 -1.3
2,951,293 - A4249_RS14570 0.59 -0.0
2,951,293 - A4249_RS14570 0.59 -0.2
2,951,293 - A4249_RS14570 0.59 +0.1
2,951,293 - A4249_RS14570 0.59 +0.3
2,951,293 - A4249_RS14570 0.59 +0.4
2,951,293 - A4249_RS14570 0.59 -0.2
2,951,358 + A4249_RS14570 0.66 -1.5
2,951,358 + A4249_RS14570 0.66 -0.5
2,951,358 + A4249_RS14570 0.66 +0.3
2,951,358 + A4249_RS14570 0.66 -0.1
2,951,358 + A4249_RS14570 0.66 +1.2
2,951,358 + A4249_RS14570 0.66 +0.8
2,951,359 - A4249_RS14570 0.66 -0.2
2,951,359 - A4249_RS14570 0.66 +0.0
2,951,359 - A4249_RS14570 0.66 +0.4
2,951,359 - A4249_RS14570 0.66 +0.2
2,951,359 - A4249_RS14570 0.66 +0.7
2,951,359 - A4249_RS14570 0.66 +0.5
2,951,359 - A4249_RS14570 0.66 -0.2
2,951,382 + A4249_RS14570 0.68 +0.2
2,951,382 + A4249_RS14570 0.68 -0.4
2,951,382 + A4249_RS14570 0.68 +0.5
2,951,382 + A4249_RS14570 0.68 -0.3
2,951,382 + A4249_RS14570 0.68 -0.2
2,951,382 + A4249_RS14570 0.68 +0.5
2,951,382 + A4249_RS14570 0.68 -0.1
2,951,382 + A4249_RS14570 0.68 +0.2
2,951,382 + A4249_RS14570 0.68 +0.3
2,951,382 + A4249_RS14570 0.68 -0.2
2,951,383 - A4249_RS14570 0.69 +0.5
2,951,637 + +1.3
2,951,637 + +0.4
2,951,637 + +0.3
2,951,637 + -0.3
2,951,637 + +0.1
2,951,637 + +0.1
2,951,637 + -0.6
2,951,637 + +0.5
2,951,638 - +0.2
2,951,638 - -0.1
2,951,638 - +0.6
2,951,688 + +0.9
2,951,688 + -1.0
2,951,688 + +0.7
2,951,689 - -0.9
2,951,689 - -0.2
2,951,701 + +0.0
2,951,702 - +0.1
2,951,702 - -1.5
2,951,702 - -1.3
2,951,770 + -0.1
2,951,771 - -0.3
2,951,811 - +0.7
2,951,961 + -0.1
2,951,961 + +0.2
2,951,962 - +0.1
2,952,150 + A4249_RS14575 0.20 +0.4
2,952,150 + A4249_RS14575 0.20 -0.3
2,952,150 + A4249_RS14575 0.20 -0.5
2,952,150 + A4249_RS14575 0.20 +0.3
2,952,150 + A4249_RS14575 0.20 +1.5
2,952,150 + A4249_RS14575 0.20 -0.7
2,952,150 + A4249_RS14575 0.20 -0.2
2,952,150 + A4249_RS14575 0.20 -0.4
2,952,150 + A4249_RS14575 0.20 +0.3
2,952,150 + A4249_RS14575 0.20 -0.2
2,952,150 + A4249_RS14575 0.20 -0.2
2,952,151 - A4249_RS14575 0.20 +0.7
2,952,151 - A4249_RS14575 0.20 +0.1
2,952,151 - A4249_RS14575 0.20 +0.5
2,952,151 - A4249_RS14575 0.20 +0.1
2,952,151 - A4249_RS14575 0.20 -0.4
2,952,151 - A4249_RS14575 0.20 +0.1
2,952,151 - A4249_RS14575 0.20 -0.1
2,952,151 - A4249_RS14575 0.20 -0.2
2,952,151 - A4249_RS14575 0.20 -0.8
2,952,151 - A4249_RS14575 0.20 -0.2
2,952,151 - A4249_RS14575 0.20 -0.4
2,952,151 - A4249_RS14575 0.20 +0.6
2,952,531 + A4249_RS14575 0.40 +0.2
2,952,531 + A4249_RS14575 0.40 +0.2
2,952,532 - A4249_RS14575 0.40 -0.7
2,952,532 - A4249_RS14575 0.40 +0.2
2,952,532 - A4249_RS14575 0.40 -0.1
2,952,603 + A4249_RS14575 0.44 +0.0
2,952,765 + A4249_RS14575 0.53 +0.2
2,952,765 + A4249_RS14575 0.53 +0.1
2,952,765 + A4249_RS14575 0.53 +0.2
2,952,765 + A4249_RS14575 0.53 +0.1
2,952,766 - A4249_RS14575 0.53 -0.2
2,952,825 + A4249_RS14575 0.56 -0.0
2,952,825 + A4249_RS14575 0.56 +0.1
2,952,825 + A4249_RS14575 0.56 -0.9
2,952,826 - A4249_RS14575 0.56 +0.3
2,952,826 - A4249_RS14575 0.56 +0.6
2,952,826 - A4249_RS14575 0.56 +0.1
2,952,826 - A4249_RS14575 0.56 -0.0
2,952,972 + A4249_RS14575 0.64 -0.3
2,952,973 - A4249_RS14575 0.64 -0.2
2,952,973 - A4249_RS14575 0.64 -0.3
2,953,038 + A4249_RS14575 0.67 +0.3
2,953,038 + A4249_RS14575 0.67 +0.2
2,953,038 + A4249_RS14575 0.67 -0.3
2,953,038 + A4249_RS14575 0.67 -0.2
2,953,038 + A4249_RS14575 0.67 -0.2
2,953,039 - A4249_RS14575 0.67 -0.0
2,953,039 - A4249_RS14575 0.67 +0.2
2,953,039 - A4249_RS14575 0.67 -0.8
2,953,506 + -1.6
2,953,506 + +0.1
2,953,506 + +1.1
2,953,507 - -0.4
2,953,507 - +0.4
2,953,507 - +0.2
2,953,507 - +0.1
2,953,507 - +0.5
2,953,507 - -0.4
2,953,507 - -0.5
2,953,507 - -0.4
2,953,650 + -0.3
2,953,650 + -0.1
2,953,650 + +0.8
2,953,651 - -0.1
2,953,714 + A4249_RS14580 0.12 +1.1
2,953,714 + A4249_RS14580 0.12 +0.1
2,953,714 + A4249_RS14580 0.12 -0.9
2,953,714 + A4249_RS14580 0.12 +0.4
2,953,714 + A4249_RS14580 0.12 -0.2
2,953,714 + A4249_RS14580 0.12 -0.3
2,953,715 - A4249_RS14580 0.12 -0.1
2,954,182 + -0.6
2,954,195 + +0.1
2,954,364 + +0.2
2,954,365 - +0.1
2,954,506 + A4249_RS14585 0.17 -0.6
2,954,507 - A4249_RS14585 0.17 +0.2
2,954,507 - A4249_RS14585 0.17 +0.7
2,954,507 - A4249_RS14585 0.17 +0.7
2,954,507 - A4249_RS14585 0.17 -0.8
2,954,604 + A4249_RS14585 0.23 -0.5
2,954,604 + A4249_RS14585 0.23 +1.0
2,954,604 + A4249_RS14585 0.23 +0.0
2,954,605 - A4249_RS14585 0.23 -0.2
2,954,605 - A4249_RS14585 0.23 +0.4
2,954,605 - A4249_RS14585 0.23 +0.7
2,954,605 - A4249_RS14585 0.23 +0.2

Or see this region's nucleotide sequence