Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14005

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13995 and A4249_RS14000 are separated by 18 nucleotidesA4249_RS14000 and A4249_RS14005 are separated by 108 nucleotidesA4249_RS14005 and A4249_RS14010 are separated by 242 nucleotidesA4249_RS14010 and A4249_RS14015 are separated by 23 nucleotides A4249_RS13995: A4249_RS13995 - transcription termination factor NusA, at 2,821,374 to 2,823,107 _RS13995 A4249_RS14000: A4249_RS14000 - RNA-binding protein, at 2,823,126 to 2,823,785 _RS14000 A4249_RS14005: A4249_RS14005 - translation initiation factor IF-2, at 2,823,894 to 2,826,920 _RS14005 A4249_RS14010: A4249_RS14010 - DUF2141 domain-containing protein, at 2,827,163 to 2,827,588 _RS14010 A4249_RS14015: A4249_RS14015 - carotenoid oxygenase family protein, at 2,827,612 to 2,829,090 _RS14015 Position (kb) 2823 2824 2825 2826 2827Strain fitness (log2 ratio) -2 -1 0 1at 2822.985 kb on + strandat 2823.018 kb on + strandat 2823.018 kb on + strandat 2823.019 kb on - strandat 2823.019 kb on - strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.847 kb on + strandat 2823.847 kb on + strandat 2823.850 kb on + strandat 2823.850 kb on + strandat 2823.850 kb on + strandat 2823.850 kb on + strandat 2823.850 kb on + strandat 2823.850 kb on + strandat 2826.918 kb on + strandat 2826.918 kb on + strandat 2826.918 kb on + strandat 2826.918 kb on + strandat 2826.918 kb on + strandat 2826.919 kb on - strandat 2826.919 kb on - strandat 2826.919 kb on - strandat 2826.919 kb on - strandat 2826.919 kb on - strandat 2826.919 kb on - strandat 2826.919 kb on - strandat 2827.154 kb on + strandat 2827.154 kb on + strandat 2827.155 kb on - strandat 2827.313 kb on + strand, within A4249_RS14010at 2827.313 kb on + strand, within A4249_RS14010at 2827.313 kb on + strand, within A4249_RS14010at 2827.313 kb on + strand, within A4249_RS14010at 2827.314 kb on - strand, within A4249_RS14010at 2827.314 kb on - strand, within A4249_RS14010at 2827.314 kb on - strand, within A4249_RS14010at 2827.372 kb on + strand, within A4249_RS14010at 2827.372 kb on + strand, within A4249_RS14010at 2827.372 kb on + strand, within A4249_RS14010at 2827.372 kb on + strand, within A4249_RS14010at 2827.372 kb on + strand, within A4249_RS14010at 2827.372 kb on + strand, within A4249_RS14010at 2827.372 kb on + strand, within A4249_RS14010at 2827.372 kb on + strand, within A4249_RS14010at 2827.373 kb on - strand, within A4249_RS14010at 2827.373 kb on - strand, within A4249_RS14010at 2827.373 kb on - strand, within A4249_RS14010at 2827.406 kb on + strand, within A4249_RS14010at 2827.406 kb on + strand, within A4249_RS14010at 2827.407 kb on - strand, within A4249_RS14010at 2827.407 kb on - strand, within A4249_RS14010at 2827.407 kb on - strand, within A4249_RS14010at 2827.407 kb on - strand, within A4249_RS14010at 2827.407 kb on - strand, within A4249_RS14010at 2827.587 kb on - strandat 2827.587 kb on - strandat 2827.587 kb on - strandat 2827.828 kb on + strand, within A4249_RS14015at 2827.828 kb on + strand, within A4249_RS14015

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,822,985 + -0.2
2,823,018 + -0.6
2,823,018 + +0.2
2,823,019 - -1.8
2,823,019 - -1.3
2,823,125 + -0.6
2,823,125 + +0.3
2,823,125 + -1.2
2,823,125 + -1.2
2,823,125 + -0.2
2,823,125 + -2.0
2,823,125 + -0.5
2,823,125 + +0.0
2,823,125 + -0.9
2,823,125 + +0.3
2,823,125 + -1.0
2,823,126 - +0.5
2,823,126 - -0.3
2,823,126 - -0.5
2,823,126 - -0.1
2,823,126 - -0.9
2,823,126 - +0.9
2,823,126 - -1.0
2,823,126 - -1.2
2,823,126 - -0.6
2,823,126 - -0.8
2,823,126 - -1.3
2,823,126 - -0.3
2,823,126 - -0.0
2,823,126 - +1.0
2,823,126 - -1.2
2,823,126 - -0.4
2,823,126 - +1.0
2,823,847 + +0.0
2,823,847 + -1.5
2,823,850 + -0.5
2,823,850 + -0.7
2,823,850 + -0.5
2,823,850 + +0.3
2,823,850 + -1.2
2,823,850 + +0.5
2,826,918 + -0.6
2,826,918 + -0.2
2,826,918 + -1.1
2,826,918 + -0.0
2,826,918 + +0.3
2,826,919 - -0.0
2,826,919 - -1.0
2,826,919 - +0.0
2,826,919 - -1.2
2,826,919 - -0.5
2,826,919 - -0.5
2,826,919 - -0.9
2,827,154 + -0.6
2,827,154 + -0.8
2,827,155 - -0.1
2,827,313 + A4249_RS14010 0.35 +0.3
2,827,313 + A4249_RS14010 0.35 -0.4
2,827,313 + A4249_RS14010 0.35 -2.2
2,827,313 + A4249_RS14010 0.35 -1.4
2,827,314 - A4249_RS14010 0.35 +0.4
2,827,314 - A4249_RS14010 0.35 -0.3
2,827,314 - A4249_RS14010 0.35 +0.4
2,827,372 + A4249_RS14010 0.49 -0.3
2,827,372 + A4249_RS14010 0.49 -0.3
2,827,372 + A4249_RS14010 0.49 -0.3
2,827,372 + A4249_RS14010 0.49 -1.4
2,827,372 + A4249_RS14010 0.49 -0.1
2,827,372 + A4249_RS14010 0.49 +0.8
2,827,372 + A4249_RS14010 0.49 -0.6
2,827,372 + A4249_RS14010 0.49 -0.3
2,827,373 - A4249_RS14010 0.49 -0.6
2,827,373 - A4249_RS14010 0.49 +0.5
2,827,373 - A4249_RS14010 0.49 -0.3
2,827,406 + A4249_RS14010 0.57 -0.7
2,827,406 + A4249_RS14010 0.57 -0.5
2,827,407 - A4249_RS14010 0.57 -1.2
2,827,407 - A4249_RS14010 0.57 -0.1
2,827,407 - A4249_RS14010 0.57 -0.1
2,827,407 - A4249_RS14010 0.57 -0.5
2,827,407 - A4249_RS14010 0.57 -0.6
2,827,587 - -0.2
2,827,587 - -1.4
2,827,587 - -0.4
2,827,828 + A4249_RS14015 0.15 +0.2
2,827,828 + A4249_RS14015 0.15 -0.4

Or see this region's nucleotide sequence