Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13970

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS13955 and A4249_RS13960 are separated by 3 nucleotidesA4249_RS13960 and A4249_RS13965 overlap by 4 nucleotidesA4249_RS13965 and A4249_RS13970 are separated by 123 nucleotidesA4249_RS13970 and A4249_RS13975 overlap by 1 nucleotides A4249_RS13955: A4249_RS13955 - hypothetical protein, at 2,814,976 to 2,815,434 _RS13955 A4249_RS13960: A4249_RS13960 - alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB, at 2,815,438 to 2,815,842 _RS13960 A4249_RS13965: A4249_RS13965 - YaiI/YqxD family protein, at 2,815,839 to 2,816,297 _RS13965 A4249_RS13970: A4249_RS13970 - amidohydrolase family protein, at 2,816,421 to 2,817,761 _RS13970 A4249_RS13975: A4249_RS13975 - amidohydrolase, at 2,817,761 to 2,819,239 _RS13975 Position (kb) 2816 2817 2818Strain fitness (log2 ratio) -2 -1 0 1 2at 2815.545 kb on - strand, within A4249_RS13960at 2815.545 kb on - strand, within A4249_RS13960at 2815.800 kb on - strand, within A4249_RS13960at 2815.800 kb on - strand, within A4249_RS13960at 2815.938 kb on + strand, within A4249_RS13965at 2816.070 kb on + strand, within A4249_RS13965at 2816.070 kb on + strand, within A4249_RS13965at 2816.070 kb on + strand, within A4249_RS13965at 2816.070 kb on + strand, within A4249_RS13965at 2816.070 kb on + strand, within A4249_RS13965at 2816.070 kb on + strand, within A4249_RS13965at 2816.071 kb on - strand, within A4249_RS13965at 2816.071 kb on - strand, within A4249_RS13965at 2816.071 kb on - strand, within A4249_RS13965at 2816.071 kb on - strand, within A4249_RS13965at 2816.071 kb on - strand, within A4249_RS13965at 2816.071 kb on - strand, within A4249_RS13965at 2816.098 kb on - strand, within A4249_RS13965at 2816.098 kb on - strand, within A4249_RS13965at 2816.098 kb on - strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.209 kb on + strand, within A4249_RS13965at 2816.210 kb on - strand, within A4249_RS13965at 2816.210 kb on - strand, within A4249_RS13965at 2816.210 kb on - strand, within A4249_RS13965at 2816.210 kb on - strand, within A4249_RS13965at 2816.210 kb on - strand, within A4249_RS13965at 2816.210 kb on - strand, within A4249_RS13965at 2816.210 kb on - strand, within A4249_RS13965at 2816.242 kb on + strand, within A4249_RS13965at 2816.242 kb on + strand, within A4249_RS13965at 2816.242 kb on + strand, within A4249_RS13965at 2816.242 kb on + strand, within A4249_RS13965at 2816.242 kb on + strand, within A4249_RS13965at 2816.242 kb on + strand, within A4249_RS13965at 2816.243 kb on - strand, within A4249_RS13965at 2816.281 kb on + strandat 2816.281 kb on + strandat 2816.281 kb on + strandat 2816.281 kb on + strandat 2816.281 kb on + strandat 2816.282 kb on - strandat 2816.282 kb on - strandat 2816.282 kb on - strandat 2816.297 kb on + strandat 2816.297 kb on + strandat 2816.297 kb on + strandat 2816.297 kb on + strandat 2816.298 kb on - strandat 2816.298 kb on - strandat 2816.298 kb on - strandat 2816.298 kb on - strandat 2816.298 kb on - strandat 2816.298 kb on - strandat 2816.311 kb on + strandat 2816.326 kb on + strandat 2816.327 kb on - strandat 2816.327 kb on - strandat 2816.342 kb on + strandat 2816.342 kb on + strandat 2816.342 kb on + strandat 2816.342 kb on + strandat 2816.343 kb on - strandat 2816.343 kb on - strandat 2816.343 kb on - strandat 2816.343 kb on - strandat 2816.431 kb on + strandat 2816.704 kb on + strand, within A4249_RS13970at 2816.705 kb on - strand, within A4249_RS13970at 2816.705 kb on - strand, within A4249_RS13970at 2816.705 kb on - strand, within A4249_RS13970at 2817.073 kb on + strand, within A4249_RS13970at 2817.074 kb on - strand, within A4249_RS13970at 2817.074 kb on - strand, within A4249_RS13970at 2817.094 kb on + strand, within A4249_RS13970at 2817.095 kb on - strand, within A4249_RS13970at 2817.095 kb on - strand, within A4249_RS13970at 2817.280 kb on + strand, within A4249_RS13970at 2817.280 kb on + strand, within A4249_RS13970at 2817.422 kb on - strand, within A4249_RS13970at 2817.802 kb on - strandat 2817.840 kb on + strandat 2817.841 kb on - strandat 2817.841 kb on - strandat 2817.903 kb on + strandat 2818.266 kb on + strand, within A4249_RS13975at 2818.267 kb on - strand, within A4249_RS13975at 2818.267 kb on - strand, within A4249_RS13975at 2818.353 kb on + strand, within A4249_RS13975at 2818.473 kb on + strand, within A4249_RS13975at 2818.473 kb on + strand, within A4249_RS13975at 2818.474 kb on - strand, within A4249_RS13975at 2818.474 kb on - strand, within A4249_RS13975at 2818.474 kb on - strand, within A4249_RS13975at 2818.474 kb on - strand, within A4249_RS13975at 2818.474 kb on - strand, within A4249_RS13975at 2818.513 kb on + strand, within A4249_RS13975at 2818.513 kb on + strand, within A4249_RS13975at 2818.514 kb on - strand, within A4249_RS13975at 2818.514 kb on - strand, within A4249_RS13975at 2818.554 kb on + strand, within A4249_RS13975at 2818.554 kb on + strand, within A4249_RS13975at 2818.554 kb on + strand, within A4249_RS13975at 2818.555 kb on - strand, within A4249_RS13975at 2818.555 kb on - strand, within A4249_RS13975at 2818.555 kb on - strand, within A4249_RS13975at 2818.555 kb on - strand, within A4249_RS13975at 2818.594 kb on + strand, within A4249_RS13975at 2818.594 kb on + strand, within A4249_RS13975at 2818.594 kb on + strand, within A4249_RS13975at 2818.594 kb on + strand, within A4249_RS13975at 2818.594 kb on + strand, within A4249_RS13975at 2818.595 kb on - strand, within A4249_RS13975at 2818.595 kb on - strand, within A4249_RS13975at 2818.596 kb on + strand, within A4249_RS13975at 2818.596 kb on + strand, within A4249_RS13975at 2818.596 kb on + strand, within A4249_RS13975at 2818.597 kb on - strand, within A4249_RS13975at 2818.597 kb on - strand, within A4249_RS13975at 2818.597 kb on - strand, within A4249_RS13975at 2818.597 kb on - strand, within A4249_RS13975

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
2,815,545 - A4249_RS13960 0.26 +0.0
2,815,545 - A4249_RS13960 0.26 +1.5
2,815,800 - A4249_RS13960 0.89 -0.1
2,815,800 - A4249_RS13960 0.89 +0.1
2,815,938 + A4249_RS13965 0.22 +1.2
2,816,070 + A4249_RS13965 0.50 +0.0
2,816,070 + A4249_RS13965 0.50 +0.2
2,816,070 + A4249_RS13965 0.50 -1.3
2,816,070 + A4249_RS13965 0.50 +0.1
2,816,070 + A4249_RS13965 0.50 -0.8
2,816,070 + A4249_RS13965 0.50 +0.3
2,816,071 - A4249_RS13965 0.51 -0.4
2,816,071 - A4249_RS13965 0.51 -0.8
2,816,071 - A4249_RS13965 0.51 -0.6
2,816,071 - A4249_RS13965 0.51 +0.7
2,816,071 - A4249_RS13965 0.51 -0.1
2,816,071 - A4249_RS13965 0.51 +0.6
2,816,098 - A4249_RS13965 0.56 -0.3
2,816,098 - A4249_RS13965 0.56 -0.0
2,816,098 - A4249_RS13965 0.56 -1.0
2,816,209 + A4249_RS13965 0.81 +0.2
2,816,209 + A4249_RS13965 0.81 -0.1
2,816,209 + A4249_RS13965 0.81 -0.8
2,816,209 + A4249_RS13965 0.81 +0.6
2,816,209 + A4249_RS13965 0.81 -0.4
2,816,209 + A4249_RS13965 0.81 -0.9
2,816,209 + A4249_RS13965 0.81 +0.0
2,816,209 + A4249_RS13965 0.81 +0.1
2,816,209 + A4249_RS13965 0.81 +0.1
2,816,209 + A4249_RS13965 0.81 +0.0
2,816,209 + A4249_RS13965 0.81 +0.3
2,816,209 + A4249_RS13965 0.81 +0.2
2,816,210 - A4249_RS13965 0.81 -0.4
2,816,210 - A4249_RS13965 0.81 +0.4
2,816,210 - A4249_RS13965 0.81 -0.5
2,816,210 - A4249_RS13965 0.81 +0.1
2,816,210 - A4249_RS13965 0.81 +1.2
2,816,210 - A4249_RS13965 0.81 -0.6
2,816,210 - A4249_RS13965 0.81 -0.6
2,816,242 + A4249_RS13965 0.88 -0.3
2,816,242 + A4249_RS13965 0.88 -0.9
2,816,242 + A4249_RS13965 0.88 -0.7
2,816,242 + A4249_RS13965 0.88 -0.8
2,816,242 + A4249_RS13965 0.88 -0.5
2,816,242 + A4249_RS13965 0.88 +0.0
2,816,243 - A4249_RS13965 0.88 -0.2
2,816,281 + -0.2
2,816,281 + -0.8
2,816,281 + -0.3
2,816,281 + -0.5
2,816,281 + -0.3
2,816,282 - -0.2
2,816,282 - -1.1
2,816,282 - -0.1
2,816,297 + +0.6
2,816,297 + -1.2
2,816,297 + -0.6
2,816,297 + -0.7
2,816,298 - +0.7
2,816,298 - -0.5
2,816,298 - +0.2
2,816,298 - +0.0
2,816,298 - +0.1
2,816,298 - -0.6
2,816,311 + +0.3
2,816,326 + -0.0
2,816,327 - -0.2
2,816,327 - -0.4
2,816,342 + -0.5
2,816,342 + -0.2
2,816,342 + -0.2
2,816,342 + +1.4
2,816,343 - +1.8
2,816,343 - -1.4
2,816,343 - -1.4
2,816,343 - -0.2
2,816,431 + -0.3
2,816,704 + A4249_RS13970 0.21 -0.5
2,816,705 - A4249_RS13970 0.21 -0.2
2,816,705 - A4249_RS13970 0.21 -0.6
2,816,705 - A4249_RS13970 0.21 -1.3
2,817,073 + A4249_RS13970 0.49 +0.2
2,817,074 - A4249_RS13970 0.49 -1.3
2,817,074 - A4249_RS13970 0.49 +0.0
2,817,094 + A4249_RS13970 0.50 +0.6
2,817,095 - A4249_RS13970 0.50 -0.1
2,817,095 - A4249_RS13970 0.50 -0.1
2,817,280 + A4249_RS13970 0.64 -1.2
2,817,280 + A4249_RS13970 0.64 -0.3
2,817,422 - A4249_RS13970 0.75 -1.5
2,817,802 - +0.1
2,817,840 + -0.1
2,817,841 - -0.1
2,817,841 - -0.3
2,817,903 + +0.3
2,818,266 + A4249_RS13975 0.34 +1.1
2,818,267 - A4249_RS13975 0.34 -1.5
2,818,267 - A4249_RS13975 0.34 -1.9
2,818,353 + A4249_RS13975 0.40 -1.0
2,818,473 + A4249_RS13975 0.48 -1.4
2,818,473 + A4249_RS13975 0.48 -0.1
2,818,474 - A4249_RS13975 0.48 -1.8
2,818,474 - A4249_RS13975 0.48 +0.6
2,818,474 - A4249_RS13975 0.48 -1.4
2,818,474 - A4249_RS13975 0.48 +0.4
2,818,474 - A4249_RS13975 0.48 -0.2
2,818,513 + A4249_RS13975 0.51 +1.1
2,818,513 + A4249_RS13975 0.51 -0.3
2,818,514 - A4249_RS13975 0.51 -0.2
2,818,514 - A4249_RS13975 0.51 -0.2
2,818,554 + A4249_RS13975 0.54 -1.8
2,818,554 + A4249_RS13975 0.54 -0.3
2,818,554 + A4249_RS13975 0.54 +0.9
2,818,555 - A4249_RS13975 0.54 -0.2
2,818,555 - A4249_RS13975 0.54 -0.4
2,818,555 - A4249_RS13975 0.54 +0.1
2,818,555 - A4249_RS13975 0.54 +0.5
2,818,594 + A4249_RS13975 0.56 +0.2
2,818,594 + A4249_RS13975 0.56 +0.1
2,818,594 + A4249_RS13975 0.56 -0.9
2,818,594 + A4249_RS13975 0.56 -0.1
2,818,594 + A4249_RS13975 0.56 -1.0
2,818,595 - A4249_RS13975 0.56 -0.1
2,818,595 - A4249_RS13975 0.56 -0.5
2,818,596 + A4249_RS13975 0.56 +0.4
2,818,596 + A4249_RS13975 0.56 -0.2
2,818,596 + A4249_RS13975 0.56 +0.9
2,818,597 - A4249_RS13975 0.57 -0.1
2,818,597 - A4249_RS13975 0.57 -0.1
2,818,597 - A4249_RS13975 0.57 +0.1
2,818,597 - A4249_RS13975 0.57 -0.3

Or see this region's nucleotide sequence