Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13560

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13550 and A4249_RS13555 overlap by 2 nucleotidesA4249_RS13555 and A4249_RS13560 are separated by 72 nucleotidesA4249_RS13560 and A4249_RS13565 are separated by 3 nucleotidesA4249_RS13565 and A4249_RS13570 are separated by 6 nucleotides A4249_RS13550: A4249_RS13550 - methyltransferase domain-containing protein, at 2,739,214 to 2,740,116 _RS13550 A4249_RS13555: A4249_RS13555 - ComF family protein, at 2,740,115 to 2,740,909 _RS13555 A4249_RS13560: A4249_RS13560 - glutaredoxin 3, at 2,740,982 to 2,741,239 _RS13560 A4249_RS13565: A4249_RS13565 - carbon-nitrogen hydrolase family protein, at 2,741,243 to 2,742,082 _RS13565 A4249_RS13570: A4249_RS13570 - DUF1178 family protein, at 2,742,089 to 2,742,523 _RS13570 Position (kb) 2740 2741 2742Strain fitness (log2 ratio) -2 -1 0 1at 2740.288 kb on - strand, within A4249_RS13555at 2740.369 kb on + strand, within A4249_RS13555at 2740.383 kb on - strand, within A4249_RS13555at 2740.383 kb on - strand, within A4249_RS13555at 2740.415 kb on + strand, within A4249_RS13555at 2740.415 kb on + strand, within A4249_RS13555at 2740.415 kb on + strand, within A4249_RS13555at 2740.415 kb on + strand, within A4249_RS13555at 2740.415 kb on + strand, within A4249_RS13555at 2740.415 kb on + strand, within A4249_RS13555at 2740.416 kb on - strand, within A4249_RS13555at 2740.416 kb on - strand, within A4249_RS13555at 2740.637 kb on + strand, within A4249_RS13555at 2740.637 kb on + strand, within A4249_RS13555at 2740.638 kb on - strand, within A4249_RS13555at 2740.638 kb on - strand, within A4249_RS13555at 2740.903 kb on + strandat 2740.903 kb on + strandat 2740.903 kb on + strandat 2740.904 kb on - strandat 2740.904 kb on - strandat 2740.904 kb on - strandat 2740.904 kb on - strandat 2740.964 kb on + strandat 2740.965 kb on - strandat 2740.965 kb on - strandat 2741.000 kb on + strandat 2741.000 kb on + strandat 2741.001 kb on - strandat 2741.001 kb on - strandat 2741.022 kb on - strand, within A4249_RS13560at 2741.066 kb on + strand, within A4249_RS13560at 2741.066 kb on + strand, within A4249_RS13560at 2741.066 kb on + strand, within A4249_RS13560at 2741.066 kb on + strand, within A4249_RS13560at 2741.066 kb on + strand, within A4249_RS13560at 2741.067 kb on - strand, within A4249_RS13560at 2741.067 kb on - strand, within A4249_RS13560at 2741.067 kb on - strand, within A4249_RS13560at 2741.068 kb on + strand, within A4249_RS13560at 2741.380 kb on + strand, within A4249_RS13565at 2741.380 kb on + strand, within A4249_RS13565at 2741.380 kb on + strand, within A4249_RS13565at 2741.380 kb on + strand, within A4249_RS13565at 2741.380 kb on + strand, within A4249_RS13565at 2741.380 kb on + strand, within A4249_RS13565at 2741.380 kb on + strand, within A4249_RS13565at 2741.381 kb on - strand, within A4249_RS13565at 2741.381 kb on - strand, within A4249_RS13565at 2741.381 kb on - strand, within A4249_RS13565at 2741.381 kb on - strand, within A4249_RS13565at 2741.639 kb on + strand, within A4249_RS13565at 2741.639 kb on + strand, within A4249_RS13565at 2741.639 kb on + strand, within A4249_RS13565at 2741.639 kb on + strand, within A4249_RS13565at 2741.640 kb on - strand, within A4249_RS13565at 2741.640 kb on - strand, within A4249_RS13565at 2741.723 kb on + strand, within A4249_RS13565at 2742.158 kb on + strand, within A4249_RS13570at 2742.159 kb on - strand, within A4249_RS13570

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,740,288 - A4249_RS13555 0.22 +0.4
2,740,369 + A4249_RS13555 0.32 -0.9
2,740,383 - A4249_RS13555 0.34 +0.4
2,740,383 - A4249_RS13555 0.34 -0.1
2,740,415 + A4249_RS13555 0.38 +0.2
2,740,415 + A4249_RS13555 0.38 +0.2
2,740,415 + A4249_RS13555 0.38 +0.2
2,740,415 + A4249_RS13555 0.38 -1.4
2,740,415 + A4249_RS13555 0.38 +0.1
2,740,415 + A4249_RS13555 0.38 +0.2
2,740,416 - A4249_RS13555 0.38 +0.6
2,740,416 - A4249_RS13555 0.38 -0.4
2,740,637 + A4249_RS13555 0.66 -0.7
2,740,637 + A4249_RS13555 0.66 -0.2
2,740,638 - A4249_RS13555 0.66 +0.0
2,740,638 - A4249_RS13555 0.66 -0.7
2,740,903 + +0.3
2,740,903 + -0.2
2,740,903 + -1.1
2,740,904 - -0.7
2,740,904 - +1.0
2,740,904 - -0.1
2,740,904 - +0.1
2,740,964 + +0.2
2,740,965 - -2.4
2,740,965 - +1.0
2,741,000 + +0.4
2,741,000 + -1.1
2,741,001 - +0.1
2,741,001 - -0.4
2,741,022 - A4249_RS13560 0.16 -1.0
2,741,066 + A4249_RS13560 0.33 -0.5
2,741,066 + A4249_RS13560 0.33 -1.0
2,741,066 + A4249_RS13560 0.33 +1.2
2,741,066 + A4249_RS13560 0.33 -1.3
2,741,066 + A4249_RS13560 0.33 +1.1
2,741,067 - A4249_RS13560 0.33 -1.3
2,741,067 - A4249_RS13560 0.33 -1.9
2,741,067 - A4249_RS13560 0.33 +0.0
2,741,068 + A4249_RS13560 0.33 +0.8
2,741,380 + A4249_RS13565 0.16 -0.5
2,741,380 + A4249_RS13565 0.16 -0.2
2,741,380 + A4249_RS13565 0.16 -0.6
2,741,380 + A4249_RS13565 0.16 +0.6
2,741,380 + A4249_RS13565 0.16 -0.0
2,741,380 + A4249_RS13565 0.16 +0.2
2,741,380 + A4249_RS13565 0.16 -0.2
2,741,381 - A4249_RS13565 0.16 -0.4
2,741,381 - A4249_RS13565 0.16 -0.6
2,741,381 - A4249_RS13565 0.16 +1.0
2,741,381 - A4249_RS13565 0.16 +0.5
2,741,639 + A4249_RS13565 0.47 -0.9
2,741,639 + A4249_RS13565 0.47 +0.0
2,741,639 + A4249_RS13565 0.47 -0.2
2,741,639 + A4249_RS13565 0.47 -0.7
2,741,640 - A4249_RS13565 0.47 +0.1
2,741,640 - A4249_RS13565 0.47 +0.2
2,741,723 + A4249_RS13565 0.57 +1.3
2,742,158 + A4249_RS13570 0.16 -0.5
2,742,159 - A4249_RS13570 0.16 -0.5

Or see this region's nucleotide sequence