Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12930

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12920 and A4249_RS12925 are separated by 85 nucleotidesA4249_RS12925 and A4249_RS12930 are separated by 42 nucleotidesA4249_RS12930 and A4249_RS12935 are separated by 56 nucleotidesA4249_RS12935 and A4249_RS16370 are separated by 79 nucleotidesA4249_RS16370 and A4249_RS12940 are separated by 3 nucleotides A4249_RS12920: A4249_RS12920 - leucyl aminopeptidase family protein, at 2,590,589 to 2,591,974 _RS12920 A4249_RS12925: A4249_RS12925 - tetratricopeptide repeat protein, at 2,592,060 to 2,592,896 _RS12925 A4249_RS12930: A4249_RS12930 - HAD-IA family hydrolase, at 2,592,939 to 2,593,598 _RS12930 A4249_RS12935: A4249_RS12935 - iron-sulfur cluster assembly scaffold protein, at 2,593,655 to 2,594,110 _RS12935 A4249_RS16370: A4249_RS16370 - membrane protein insertion efficiency factor YidD, at 2,594,190 to 2,594,420 _RS16370 A4249_RS12940: A4249_RS12940 - threonine--tRNA ligase, at 2,594,424 to 2,596,352 _RS12940 Position (kb) 2592 2593 2594Strain fitness (log2 ratio) -1 0 1at 2591.994 kb on + strandat 2591.995 kb on - strandat 2591.995 kb on - strandat 2592.025 kb on - strandat 2592.025 kb on - strandat 2592.038 kb on + strandat 2592.038 kb on + strandat 2592.039 kb on - strandat 2592.039 kb on - strandat 2592.039 kb on - strandat 2592.195 kb on + strand, within A4249_RS12925at 2592.195 kb on + strand, within A4249_RS12925at 2592.195 kb on + strand, within A4249_RS12925at 2592.195 kb on + strand, within A4249_RS12925at 2592.195 kb on + strand, within A4249_RS12925at 2592.195 kb on + strand, within A4249_RS12925at 2592.195 kb on + strand, within A4249_RS12925at 2592.195 kb on + strand, within A4249_RS12925at 2592.195 kb on + strand, within A4249_RS12925at 2592.195 kb on + strand, within A4249_RS12925at 2592.195 kb on + strand, within A4249_RS12925at 2592.196 kb on - strand, within A4249_RS12925at 2592.196 kb on - strand, within A4249_RS12925at 2592.196 kb on - strand, within A4249_RS12925at 2592.196 kb on - strand, within A4249_RS12925at 2592.196 kb on - strand, within A4249_RS12925at 2592.196 kb on - strand, within A4249_RS12925at 2592.196 kb on - strand, within A4249_RS12925at 2592.196 kb on - strand, within A4249_RS12925at 2592.196 kb on - strand, within A4249_RS12925at 2592.196 kb on - strand, within A4249_RS12925at 2592.196 kb on - strand, within A4249_RS12925at 2592.312 kb on + strand, within A4249_RS12925at 2592.313 kb on - strand, within A4249_RS12925at 2592.420 kb on + strand, within A4249_RS12925at 2592.420 kb on + strand, within A4249_RS12925at 2592.420 kb on + strand, within A4249_RS12925at 2592.420 kb on + strand, within A4249_RS12925at 2592.421 kb on - strand, within A4249_RS12925at 2592.421 kb on - strand, within A4249_RS12925at 2592.477 kb on + strand, within A4249_RS12925at 2592.477 kb on + strand, within A4249_RS12925at 2592.498 kb on + strand, within A4249_RS12925at 2592.499 kb on - strand, within A4249_RS12925at 2592.499 kb on - strand, within A4249_RS12925at 2592.499 kb on - strand, within A4249_RS12925at 2592.499 kb on - strand, within A4249_RS12925at 2592.966 kb on + strandat 2592.966 kb on + strandat 2593.136 kb on + strand, within A4249_RS12930at 2593.377 kb on + strand, within A4249_RS12930at 2593.542 kb on + strandat 2593.542 kb on + strandat 2593.596 kb on + strandat 2593.597 kb on - strandat 2593.597 kb on - strandat 2593.643 kb on + strandat 2593.643 kb on + strandat 2593.644 kb on - strandat 2593.644 kb on - strandat 2593.644 kb on - strandat 2593.644 kb on - strandat 2594.149 kb on + strandat 2594.149 kb on + strandat 2594.199 kb on + strandat 2594.199 kb on + strandat 2594.199 kb on + strandat 2594.200 kb on - strandat 2594.411 kb on + strandat 2594.412 kb on - strandat 2594.412 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,591,994 + +0.3
2,591,995 - +0.1
2,591,995 - +0.9
2,592,025 - +0.8
2,592,025 - -0.2
2,592,038 + -0.0
2,592,038 + -0.1
2,592,039 - +0.2
2,592,039 - +0.7
2,592,039 - +0.7
2,592,195 + A4249_RS12925 0.16 -0.5
2,592,195 + A4249_RS12925 0.16 +0.4
2,592,195 + A4249_RS12925 0.16 +0.0
2,592,195 + A4249_RS12925 0.16 -0.0
2,592,195 + A4249_RS12925 0.16 -0.2
2,592,195 + A4249_RS12925 0.16 -1.0
2,592,195 + A4249_RS12925 0.16 -0.7
2,592,195 + A4249_RS12925 0.16 -0.1
2,592,195 + A4249_RS12925 0.16 -0.2
2,592,195 + A4249_RS12925 0.16 -0.5
2,592,195 + A4249_RS12925 0.16 +0.1
2,592,196 - A4249_RS12925 0.16 +0.2
2,592,196 - A4249_RS12925 0.16 +0.2
2,592,196 - A4249_RS12925 0.16 -0.2
2,592,196 - A4249_RS12925 0.16 +0.7
2,592,196 - A4249_RS12925 0.16 +0.1
2,592,196 - A4249_RS12925 0.16 -0.1
2,592,196 - A4249_RS12925 0.16 -0.2
2,592,196 - A4249_RS12925 0.16 -0.6
2,592,196 - A4249_RS12925 0.16 -0.2
2,592,196 - A4249_RS12925 0.16 +0.3
2,592,196 - A4249_RS12925 0.16 +0.1
2,592,312 + A4249_RS12925 0.30 +0.2
2,592,313 - A4249_RS12925 0.30 -0.0
2,592,420 + A4249_RS12925 0.43 +0.1
2,592,420 + A4249_RS12925 0.43 -0.6
2,592,420 + A4249_RS12925 0.43 -0.1
2,592,420 + A4249_RS12925 0.43 -0.3
2,592,421 - A4249_RS12925 0.43 +0.3
2,592,421 - A4249_RS12925 0.43 +0.0
2,592,477 + A4249_RS12925 0.50 +0.2
2,592,477 + A4249_RS12925 0.50 +0.3
2,592,498 + A4249_RS12925 0.52 -0.8
2,592,499 - A4249_RS12925 0.52 +1.1
2,592,499 - A4249_RS12925 0.52 -0.6
2,592,499 - A4249_RS12925 0.52 +1.2
2,592,499 - A4249_RS12925 0.52 -0.2
2,592,966 + +0.0
2,592,966 + +0.4
2,593,136 + A4249_RS12930 0.30 -0.0
2,593,377 + A4249_RS12930 0.66 +0.2
2,593,542 + +0.9
2,593,542 + +0.1
2,593,596 + -0.2
2,593,597 - +0.4
2,593,597 - -0.4
2,593,643 + +0.2
2,593,643 + -0.7
2,593,644 - -0.0
2,593,644 - -0.8
2,593,644 - +0.3
2,593,644 - +0.6
2,594,149 + +0.2
2,594,149 + -0.8
2,594,199 + +1.0
2,594,199 + -0.2
2,594,199 + -0.3
2,594,200 - -0.3
2,594,411 + -0.4
2,594,412 - -0.2
2,594,412 - -0.4

Or see this region's nucleotide sequence