Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12680

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12675 and A4249_RS12680 are separated by 85 nucleotidesA4249_RS12680 and A4249_RS12685 are separated by 35 nucleotides A4249_RS12675: A4249_RS12675 - malate dehydrogenase, at 2,542,182 to 2,543,144 _RS12675 A4249_RS12680: A4249_RS12680 - YbjN domain-containing protein, at 2,543,230 to 2,543,730 _RS12680 A4249_RS12685: A4249_RS12685 - cell division protein ZapE, at 2,543,766 to 2,544,857 _RS12685 Position (kb) 2543 2544Strain fitness (log2 ratio) -1 0 1at 2543.117 kb on + strandat 2543.117 kb on + strandat 2543.142 kb on + strandat 2543.143 kb on - strandat 2543.143 kb on - strandat 2543.143 kb on - strandat 2543.143 kb on - strandat 2543.247 kb on - strandat 2543.247 kb on - strandat 2543.345 kb on + strand, within A4249_RS12680at 2543.345 kb on + strand, within A4249_RS12680at 2543.346 kb on - strand, within A4249_RS12680at 2543.346 kb on - strand, within A4249_RS12680at 2543.396 kb on + strand, within A4249_RS12680at 2543.397 kb on - strand, within A4249_RS12680at 2543.501 kb on + strand, within A4249_RS12680at 2543.501 kb on + strand, within A4249_RS12680at 2543.502 kb on - strand, within A4249_RS12680at 2543.502 kb on - strand, within A4249_RS12680at 2543.502 kb on - strand, within A4249_RS12680at 2543.502 kb on - strand, within A4249_RS12680at 2543.502 kb on - strand, within A4249_RS12680at 2543.502 kb on - strand, within A4249_RS12680at 2543.502 kb on - strand, within A4249_RS12680at 2543.502 kb on - strand, within A4249_RS12680at 2543.502 kb on - strand, within A4249_RS12680at 2543.756 kb on - strandat 2544.697 kb on + strand, within A4249_RS12685

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,543,117 + +0.4
2,543,117 + +0.4
2,543,142 + +0.6
2,543,143 - +0.5
2,543,143 - -0.5
2,543,143 - +0.1
2,543,143 - -0.2
2,543,247 - +0.4
2,543,247 - +0.6
2,543,345 + A4249_RS12680 0.23 +0.5
2,543,345 + A4249_RS12680 0.23 -0.9
2,543,346 - A4249_RS12680 0.23 +0.1
2,543,346 - A4249_RS12680 0.23 +0.4
2,543,396 + A4249_RS12680 0.33 -0.8
2,543,397 - A4249_RS12680 0.33 -0.3
2,543,501 + A4249_RS12680 0.54 +0.3
2,543,501 + A4249_RS12680 0.54 +0.5
2,543,502 - A4249_RS12680 0.54 +0.2
2,543,502 - A4249_RS12680 0.54 +0.3
2,543,502 - A4249_RS12680 0.54 +0.5
2,543,502 - A4249_RS12680 0.54 +0.2
2,543,502 - A4249_RS12680 0.54 -0.4
2,543,502 - A4249_RS12680 0.54 +0.4
2,543,502 - A4249_RS12680 0.54 +0.7
2,543,502 - A4249_RS12680 0.54 +0.0
2,543,502 - A4249_RS12680 0.54 +0.4
2,543,756 - +0.1
2,544,697 + A4249_RS12685 0.85 +0.5

Or see this region's nucleotide sequence