Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12305

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12300 and A4249_RS12305 are separated by 1 nucleotidesA4249_RS12305 and A4249_RS12310 are separated by 30 nucleotides A4249_RS12300: A4249_RS12300 - KpsF/GutQ family sugar-phosphate isomerase, at 2,469,965 to 2,470,957 _RS12300 A4249_RS12305: A4249_RS12305 - glycosyltransferase family 1 protein, at 2,470,959 to 2,472,242 _RS12305 A4249_RS12310: A4249_RS12310 - polysaccharide biosynthesis/export family protein, at 2,472,273 to 2,473,445 _RS12310 Position (kb) 2470 2471 2472 2473Strain fitness (log2 ratio) -2 -1 0 1 2at 2469.964 kb on + strandat 2469.964 kb on + strandat 2469.964 kb on + strandat 2469.965 kb on - strandat 2469.965 kb on - strandat 2469.965 kb on - strandat 2469.965 kb on - strandat 2469.965 kb on - strandat 2469.965 kb on - strandat 2470.946 kb on + strandat 2470.947 kb on - strandat 2470.947 kb on - strandat 2470.956 kb on - strandat 2470.956 kb on - strandat 2470.956 kb on - strandat 2470.958 kb on + strandat 2470.958 kb on + strandat 2470.958 kb on + strandat 2470.958 kb on + strandat 2470.958 kb on + strandat 2470.958 kb on + strandat 2470.958 kb on + strandat 2470.958 kb on + strandat 2470.958 kb on + strandat 2470.958 kb on + strandat 2470.958 kb on + strandat 2470.959 kb on - strandat 2470.959 kb on - strandat 2470.959 kb on - strandat 2470.959 kb on - strandat 2470.959 kb on - strandat 2470.959 kb on - strandat 2470.959 kb on - strandat 2470.959 kb on - strandat 2470.959 kb on - strandat 2470.959 kb on - strandat 2470.959 kb on - strandat 2470.959 kb on - strandat 2470.972 kb on - strandat 2470.972 kb on - strandat 2471.043 kb on + strandat 2471.044 kb on - strandat 2471.367 kb on + strand, within A4249_RS12305at 2471.367 kb on + strand, within A4249_RS12305at 2471.368 kb on - strand, within A4249_RS12305at 2471.571 kb on + strand, within A4249_RS12305at 2471.572 kb on - strand, within A4249_RS12305at 2471.572 kb on - strand, within A4249_RS12305at 2471.697 kb on + strand, within A4249_RS12305at 2471.698 kb on - strand, within A4249_RS12305at 2471.698 kb on - strand, within A4249_RS12305at 2471.698 kb on - strand, within A4249_RS12305at 2471.755 kb on + strand, within A4249_RS12305at 2471.756 kb on - strand, within A4249_RS12305at 2471.945 kb on - strand, within A4249_RS12305at 2472.144 kb on + strandat 2472.240 kb on + strandat 2472.240 kb on + strandat 2472.240 kb on + strandat 2472.240 kb on + strandat 2472.240 kb on + strandat 2472.240 kb on + strandat 2472.240 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,469,964 + -0.2
2,469,964 + +0.2
2,469,964 + -0.0
2,469,965 - -0.5
2,469,965 - -1.0
2,469,965 - -0.7
2,469,965 - +1.4
2,469,965 - -1.9
2,469,965 - -0.3
2,470,946 + -1.1
2,470,947 - -0.1
2,470,947 - +0.2
2,470,956 - +0.1
2,470,956 - +0.0
2,470,956 - -0.6
2,470,958 + +1.8
2,470,958 + +1.0
2,470,958 + +0.1
2,470,958 + +0.6
2,470,958 + -0.5
2,470,958 + +0.3
2,470,958 + -0.1
2,470,958 + -0.1
2,470,958 + -0.7
2,470,958 + -0.2
2,470,958 + +0.0
2,470,959 - +0.1
2,470,959 - -0.5
2,470,959 - +0.6
2,470,959 - +0.2
2,470,959 - +0.1
2,470,959 - +0.1
2,470,959 - -0.4
2,470,959 - +0.4
2,470,959 - -0.8
2,470,959 - +0.5
2,470,959 - +0.0
2,470,959 - -0.4
2,470,972 - -0.8
2,470,972 - -0.4
2,471,043 + -0.2
2,471,044 - -1.0
2,471,367 + A4249_RS12305 0.32 -1.8
2,471,367 + A4249_RS12305 0.32 -2.1
2,471,368 - A4249_RS12305 0.32 +1.8
2,471,571 + A4249_RS12305 0.48 -1.3
2,471,572 - A4249_RS12305 0.48 +0.4
2,471,572 - A4249_RS12305 0.48 +1.8
2,471,697 + A4249_RS12305 0.57 -0.8
2,471,698 - A4249_RS12305 0.58 -0.9
2,471,698 - A4249_RS12305 0.58 +0.6
2,471,698 - A4249_RS12305 0.58 -2.3
2,471,755 + A4249_RS12305 0.62 -1.2
2,471,756 - A4249_RS12305 0.62 -1.0
2,471,945 - A4249_RS12305 0.77 -0.6
2,472,144 + -0.7
2,472,240 + -0.3
2,472,240 + -0.8
2,472,240 + -0.8
2,472,240 + -1.0
2,472,240 + +0.8
2,472,240 + +0.2
2,472,240 + -0.3

Or see this region's nucleotide sequence