Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12270

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS12260 and A4249_RS12265 overlap by 4 nucleotidesA4249_RS12265 and A4249_RS12270 are separated by 57 nucleotidesA4249_RS12270 and A4249_RS12275 are separated by 41 nucleotides A4249_RS12260: A4249_RS12260 - 3-hydroxybutyryl-CoA dehydrogenase, at 2,460,157 to 2,461,038 _RS12260 A4249_RS12265: A4249_RS12265 - phthalate transporter, at 2,461,035 to 2,461,592 _RS12265 A4249_RS12270: A4249_RS12270 - DUF418 domain-containing protein, at 2,461,650 to 2,462,894 _RS12270 A4249_RS12275: A4249_RS12275 - cobaltochelatase subunit CobT, at 2,462,936 to 2,464,819 _RS12275 Position (kb) 2461 2462 2463Strain fitness (log2 ratio) -2 -1 0 1 2at 2460.696 kb on + strand, within A4249_RS12260at 2460.735 kb on + strand, within A4249_RS12260at 2460.735 kb on + strand, within A4249_RS12260at 2460.736 kb on - strand, within A4249_RS12260at 2460.904 kb on + strand, within A4249_RS12260at 2461.006 kb on + strandat 2461.700 kb on - strandat 2461.803 kb on + strand, within A4249_RS12270at 2461.803 kb on + strand, within A4249_RS12270at 2461.803 kb on + strand, within A4249_RS12270at 2461.803 kb on + strand, within A4249_RS12270at 2461.804 kb on - strand, within A4249_RS12270at 2461.804 kb on - strand, within A4249_RS12270at 2461.804 kb on - strand, within A4249_RS12270at 2461.804 kb on - strand, within A4249_RS12270at 2461.804 kb on - strand, within A4249_RS12270at 2461.929 kb on + strand, within A4249_RS12270at 2461.929 kb on + strand, within A4249_RS12270at 2461.930 kb on - strand, within A4249_RS12270at 2461.930 kb on - strand, within A4249_RS12270at 2461.930 kb on - strand, within A4249_RS12270at 2461.930 kb on - strand, within A4249_RS12270at 2461.930 kb on - strand, within A4249_RS12270at 2462.034 kb on + strand, within A4249_RS12270at 2462.035 kb on - strand, within A4249_RS12270at 2462.055 kb on + strand, within A4249_RS12270at 2462.055 kb on + strand, within A4249_RS12270at 2462.056 kb on - strand, within A4249_RS12270at 2462.056 kb on - strand, within A4249_RS12270at 2462.056 kb on - strand, within A4249_RS12270at 2462.229 kb on + strand, within A4249_RS12270at 2462.229 kb on + strand, within A4249_RS12270at 2462.229 kb on + strand, within A4249_RS12270at 2462.229 kb on + strand, within A4249_RS12270at 2462.229 kb on + strand, within A4249_RS12270at 2462.229 kb on + strand, within A4249_RS12270at 2462.230 kb on - strand, within A4249_RS12270at 2462.230 kb on - strand, within A4249_RS12270at 2462.230 kb on - strand, within A4249_RS12270at 2462.402 kb on - strand, within A4249_RS12270at 2462.430 kb on + strand, within A4249_RS12270at 2462.430 kb on + strand, within A4249_RS12270at 2462.431 kb on - strand, within A4249_RS12270at 2462.431 kb on - strand, within A4249_RS12270at 2462.431 kb on - strand, within A4249_RS12270at 2462.431 kb on - strand, within A4249_RS12270at 2462.431 kb on - strand, within A4249_RS12270at 2462.431 kb on - strand, within A4249_RS12270at 2462.431 kb on - strand, within A4249_RS12270at 2462.431 kb on - strand, within A4249_RS12270at 2462.431 kb on - strand, within A4249_RS12270at 2462.461 kb on + strand, within A4249_RS12270at 2462.577 kb on + strand, within A4249_RS12270at 2462.577 kb on + strand, within A4249_RS12270at 2462.577 kb on + strand, within A4249_RS12270at 2462.577 kb on + strand, within A4249_RS12270at 2462.577 kb on + strand, within A4249_RS12270at 2462.577 kb on + strand, within A4249_RS12270at 2462.577 kb on + strand, within A4249_RS12270at 2462.577 kb on + strand, within A4249_RS12270at 2462.577 kb on + strand, within A4249_RS12270at 2462.578 kb on - strand, within A4249_RS12270at 2462.578 kb on - strand, within A4249_RS12270at 2462.578 kb on - strand, within A4249_RS12270at 2462.578 kb on - strand, within A4249_RS12270at 2462.578 kb on - strand, within A4249_RS12270at 2462.667 kb on + strand, within A4249_RS12270at 2462.667 kb on + strand, within A4249_RS12270at 2462.667 kb on + strand, within A4249_RS12270at 2462.667 kb on + strand, within A4249_RS12270at 2462.667 kb on + strand, within A4249_RS12270at 2462.667 kb on + strand, within A4249_RS12270at 2462.668 kb on - strand, within A4249_RS12270at 2462.668 kb on - strand, within A4249_RS12270at 2462.668 kb on - strand, within A4249_RS12270at 2462.668 kb on - strand, within A4249_RS12270at 2462.668 kb on - strand, within A4249_RS12270at 2462.703 kb on + strand, within A4249_RS12270at 2462.703 kb on + strand, within A4249_RS12270at 2462.703 kb on + strand, within A4249_RS12270at 2462.703 kb on + strand, within A4249_RS12270at 2462.704 kb on - strand, within A4249_RS12270at 2462.704 kb on - strand, within A4249_RS12270at 2462.742 kb on + strand, within A4249_RS12270at 2462.742 kb on + strand, within A4249_RS12270at 2462.742 kb on + strand, within A4249_RS12270at 2462.742 kb on + strand, within A4249_RS12270at 2462.742 kb on + strand, within A4249_RS12270at 2462.742 kb on + strand, within A4249_RS12270at 2462.742 kb on + strand, within A4249_RS12270at 2462.743 kb on - strand, within A4249_RS12270at 2462.743 kb on - strand, within A4249_RS12270at 2462.743 kb on - strand, within A4249_RS12270at 2462.743 kb on - strand, within A4249_RS12270at 2462.743 kb on - strand, within A4249_RS12270at 2462.743 kb on - strand, within A4249_RS12270at 2462.743 kb on - strand, within A4249_RS12270at 2462.743 kb on - strand, within A4249_RS12270at 2462.859 kb on + strandat 2462.859 kb on + strandat 2462.859 kb on + strandat 2462.859 kb on + strandat 2462.860 kb on - strandat 2462.904 kb on + strandat 2462.905 kb on - strandat 2462.950 kb on + strandat 2462.951 kb on - strandat 2463.150 kb on + strand, within A4249_RS12275at 2463.583 kb on + strand, within A4249_RS12275at 2463.584 kb on - strand, within A4249_RS12275at 2463.584 kb on - strand, within A4249_RS12275at 2463.584 kb on - strand, within A4249_RS12275at 2463.858 kb on - strand, within A4249_RS12275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
2,460,696 + A4249_RS12260 0.61 +0.4
2,460,735 + A4249_RS12260 0.66 +0.0
2,460,735 + A4249_RS12260 0.66 +0.2
2,460,736 - A4249_RS12260 0.66 +0.5
2,460,904 + A4249_RS12260 0.85 +0.8
2,461,006 + +1.2
2,461,700 - +1.8
2,461,803 + A4249_RS12270 0.12 -0.3
2,461,803 + A4249_RS12270 0.12 +0.1
2,461,803 + A4249_RS12270 0.12 +0.1
2,461,803 + A4249_RS12270 0.12 +0.7
2,461,804 - A4249_RS12270 0.12 -0.0
2,461,804 - A4249_RS12270 0.12 -0.2
2,461,804 - A4249_RS12270 0.12 -0.3
2,461,804 - A4249_RS12270 0.12 +0.1
2,461,804 - A4249_RS12270 0.12 -0.4
2,461,929 + A4249_RS12270 0.22 +0.0
2,461,929 + A4249_RS12270 0.22 -1.3
2,461,930 - A4249_RS12270 0.22 +0.0
2,461,930 - A4249_RS12270 0.22 +0.1
2,461,930 - A4249_RS12270 0.22 +0.5
2,461,930 - A4249_RS12270 0.22 +0.4
2,461,930 - A4249_RS12270 0.22 -0.8
2,462,034 + A4249_RS12270 0.31 +0.4
2,462,035 - A4249_RS12270 0.31 +0.3
2,462,055 + A4249_RS12270 0.33 -0.9
2,462,055 + A4249_RS12270 0.33 +1.1
2,462,056 - A4249_RS12270 0.33 +0.2
2,462,056 - A4249_RS12270 0.33 +0.0
2,462,056 - A4249_RS12270 0.33 +0.6
2,462,229 + A4249_RS12270 0.47 +0.5
2,462,229 + A4249_RS12270 0.47 -0.0
2,462,229 + A4249_RS12270 0.47 -0.4
2,462,229 + A4249_RS12270 0.47 +0.1
2,462,229 + A4249_RS12270 0.47 +0.1
2,462,229 + A4249_RS12270 0.47 +0.6
2,462,230 - A4249_RS12270 0.47 -0.5
2,462,230 - A4249_RS12270 0.47 -0.3
2,462,230 - A4249_RS12270 0.47 -0.6
2,462,402 - A4249_RS12270 0.60 +0.7
2,462,430 + A4249_RS12270 0.63 +0.4
2,462,430 + A4249_RS12270 0.63 +0.0
2,462,431 - A4249_RS12270 0.63 +0.8
2,462,431 - A4249_RS12270 0.63 +0.5
2,462,431 - A4249_RS12270 0.63 -0.7
2,462,431 - A4249_RS12270 0.63 +0.8
2,462,431 - A4249_RS12270 0.63 -0.6
2,462,431 - A4249_RS12270 0.63 -0.0
2,462,431 - A4249_RS12270 0.63 +0.8
2,462,431 - A4249_RS12270 0.63 -0.3
2,462,431 - A4249_RS12270 0.63 +0.6
2,462,461 + A4249_RS12270 0.65 +0.1
2,462,577 + A4249_RS12270 0.74 +0.3
2,462,577 + A4249_RS12270 0.74 -0.0
2,462,577 + A4249_RS12270 0.74 -0.5
2,462,577 + A4249_RS12270 0.74 -0.5
2,462,577 + A4249_RS12270 0.74 -1.2
2,462,577 + A4249_RS12270 0.74 +0.2
2,462,577 + A4249_RS12270 0.74 +0.9
2,462,577 + A4249_RS12270 0.74 -0.5
2,462,577 + A4249_RS12270 0.74 -0.3
2,462,578 - A4249_RS12270 0.75 -1.1
2,462,578 - A4249_RS12270 0.75 +0.2
2,462,578 - A4249_RS12270 0.75 -0.1
2,462,578 - A4249_RS12270 0.75 +0.5
2,462,578 - A4249_RS12270 0.75 +1.0
2,462,667 + A4249_RS12270 0.82 +0.2
2,462,667 + A4249_RS12270 0.82 -0.6
2,462,667 + A4249_RS12270 0.82 -0.0
2,462,667 + A4249_RS12270 0.82 -1.8
2,462,667 + A4249_RS12270 0.82 -0.2
2,462,667 + A4249_RS12270 0.82 -0.1
2,462,668 - A4249_RS12270 0.82 +0.7
2,462,668 - A4249_RS12270 0.82 -0.8
2,462,668 - A4249_RS12270 0.82 +0.1
2,462,668 - A4249_RS12270 0.82 -0.2
2,462,668 - A4249_RS12270 0.82 +1.1
2,462,703 + A4249_RS12270 0.85 +0.4
2,462,703 + A4249_RS12270 0.85 +0.2
2,462,703 + A4249_RS12270 0.85 +0.2
2,462,703 + A4249_RS12270 0.85 +0.5
2,462,704 - A4249_RS12270 0.85 -0.3
2,462,704 - A4249_RS12270 0.85 +0.9
2,462,742 + A4249_RS12270 0.88 +0.3
2,462,742 + A4249_RS12270 0.88 +0.5
2,462,742 + A4249_RS12270 0.88 -0.5
2,462,742 + A4249_RS12270 0.88 -0.1
2,462,742 + A4249_RS12270 0.88 +1.3
2,462,742 + A4249_RS12270 0.88 -0.5
2,462,742 + A4249_RS12270 0.88 -0.2
2,462,743 - A4249_RS12270 0.88 +0.1
2,462,743 - A4249_RS12270 0.88 -1.5
2,462,743 - A4249_RS12270 0.88 -0.2
2,462,743 - A4249_RS12270 0.88 -0.1
2,462,743 - A4249_RS12270 0.88 -0.4
2,462,743 - A4249_RS12270 0.88 +0.7
2,462,743 - A4249_RS12270 0.88 -0.3
2,462,743 - A4249_RS12270 0.88 +0.5
2,462,859 + +0.4
2,462,859 + -0.6
2,462,859 + +1.1
2,462,859 + +0.9
2,462,860 - +0.1
2,462,904 + +0.6
2,462,905 - -0.9
2,462,950 + +0.4
2,462,951 - -0.2
2,463,150 + A4249_RS12275 0.11 -0.5
2,463,583 + A4249_RS12275 0.34 +1.3
2,463,584 - A4249_RS12275 0.34 -0.2
2,463,584 - A4249_RS12275 0.34 -1.0
2,463,584 - A4249_RS12275 0.34 -1.0
2,463,858 - A4249_RS12275 0.49 +1.1

Or see this region's nucleotide sequence