Experiment: Adenine 0.74 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS12245 and A4249_RS12250 are separated by 273 nucleotides A4249_RS12250 and A4249_RS12255 are separated by 163 nucleotides A4249_RS12255 and A4249_RS12260 are separated by 104 nucleotides A4249_RS12260 and A4249_RS12265 overlap by 4 nucleotides A4249_RS12265 and A4249_RS12270 are separated by 57 nucleotides
A4249_RS12245: A4249_RS12245 - methyltransferase domain-containing protein, at 2,458,050 to 2,459,234
_RS12245
A4249_RS12250: A4249_RS12250 - tRNA-Ala, at 2,459,508 to 2,459,583
_RS12250
A4249_RS12255: A4249_RS12255 - YggT family protein, at 2,459,747 to 2,460,052
_RS12255
A4249_RS12260: A4249_RS12260 - 3-hydroxybutyryl-CoA dehydrogenase, at 2,460,157 to 2,461,038
_RS12260
A4249_RS12265: A4249_RS12265 - phthalate transporter, at 2,461,035 to 2,461,592
_RS12265
A4249_RS12270: A4249_RS12270 - DUF418 domain-containing protein, at 2,461,650 to 2,462,894
_RS12270
Position (kb)
2460
2461
2462 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2459.177 kb on + strand at 2459.177 kb on + strand at 2459.177 kb on + strand at 2459.177 kb on + strand at 2459.177 kb on + strand at 2459.177 kb on + strand at 2459.178 kb on - strand at 2459.178 kb on - strand at 2459.178 kb on - strand at 2459.178 kb on - strand at 2459.178 kb on - strand at 2459.178 kb on - strand at 2459.178 kb on - strand at 2459.269 kb on + strand at 2459.269 kb on + strand at 2459.269 kb on + strand at 2459.270 kb on - strand at 2459.270 kb on - strand at 2459.270 kb on - strand at 2459.270 kb on - strand at 2459.270 kb on - strand at 2459.272 kb on + strand at 2459.272 kb on + strand at 2459.272 kb on + strand at 2459.272 kb on + strand at 2459.272 kb on + strand at 2459.272 kb on + strand at 2459.272 kb on + strand at 2459.273 kb on - strand at 2459.273 kb on - strand at 2459.273 kb on - strand at 2459.273 kb on - strand at 2459.273 kb on - strand at 2459.273 kb on - strand at 2459.273 kb on - strand at 2459.381 kb on + strand at 2459.381 kb on + strand at 2459.449 kb on - strand at 2459.624 kb on + strand at 2459.624 kb on + strand at 2459.624 kb on + strand at 2459.624 kb on + strand at 2459.625 kb on - strand at 2459.625 kb on - strand at 2459.625 kb on - strand at 2459.625 kb on - strand at 2459.625 kb on - strand at 2459.625 kb on - strand at 2459.625 kb on - strand at 2459.625 kb on - strand at 2459.625 kb on - strand at 2459.625 kb on - strand at 2459.625 kb on - strand at 2459.625 kb on - strand at 2459.682 kb on + strand at 2460.121 kb on + strand at 2460.122 kb on - strand at 2460.463 kb on + strand, within A4249_RS12260 at 2460.463 kb on + strand, within A4249_RS12260 at 2460.463 kb on + strand, within A4249_RS12260 at 2460.464 kb on - strand, within A4249_RS12260 at 2460.464 kb on - strand, within A4249_RS12260 at 2460.696 kb on + strand, within A4249_RS12260 at 2460.735 kb on + strand, within A4249_RS12260 at 2460.735 kb on + strand, within A4249_RS12260 at 2460.736 kb on - strand, within A4249_RS12260 at 2460.904 kb on + strand, within A4249_RS12260 at 2461.006 kb on + strand at 2461.700 kb on - strand at 2461.803 kb on + strand, within A4249_RS12270 at 2461.803 kb on + strand, within A4249_RS12270 at 2461.803 kb on + strand, within A4249_RS12270 at 2461.803 kb on + strand, within A4249_RS12270 at 2461.804 kb on - strand, within A4249_RS12270 at 2461.804 kb on - strand, within A4249_RS12270 at 2461.804 kb on - strand, within A4249_RS12270 at 2461.804 kb on - strand, within A4249_RS12270 at 2461.804 kb on - strand, within A4249_RS12270 at 2461.929 kb on + strand, within A4249_RS12270 at 2461.929 kb on + strand, within A4249_RS12270 at 2461.930 kb on - strand, within A4249_RS12270 at 2461.930 kb on - strand, within A4249_RS12270 at 2461.930 kb on - strand, within A4249_RS12270 at 2461.930 kb on - strand, within A4249_RS12270 at 2461.930 kb on - strand, within A4249_RS12270 at 2462.034 kb on + strand, within A4249_RS12270 at 2462.035 kb on - strand, within A4249_RS12270
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C) remove 2,459,177 + +3.4 2,459,177 + -1.0 2,459,177 + +1.4 2,459,177 + -0.2 2,459,177 + +0.5 2,459,177 + -0.7 2,459,178 - +0.2 2,459,178 - -0.1 2,459,178 - -0.4 2,459,178 - -0.8 2,459,178 - -0.2 2,459,178 - -0.4 2,459,178 - +0.6 2,459,269 + -2.0 2,459,269 + +0.2 2,459,269 + +0.2 2,459,270 - +0.2 2,459,270 - +0.3 2,459,270 - +0.6 2,459,270 - -0.4 2,459,270 - +0.6 2,459,272 + -0.8 2,459,272 + +0.4 2,459,272 + -1.3 2,459,272 + -0.9 2,459,272 + +1.1 2,459,272 + +0.1 2,459,272 + -0.3 2,459,273 - +0.3 2,459,273 - -0.3 2,459,273 - -0.7 2,459,273 - -0.1 2,459,273 - +0.6 2,459,273 - -0.0 2,459,273 - +0.2 2,459,381 + +0.3 2,459,381 + -0.9 2,459,449 - +0.5 2,459,624 + -0.4 2,459,624 + +1.0 2,459,624 + -0.5 2,459,624 + +0.6 2,459,625 - -0.5 2,459,625 - -0.5 2,459,625 - +0.4 2,459,625 - -0.0 2,459,625 - -0.4 2,459,625 - -0.1 2,459,625 - +0.1 2,459,625 - +0.6 2,459,625 - -0.4 2,459,625 - -0.1 2,459,625 - -0.8 2,459,625 - -0.2 2,459,682 + +0.6 2,460,121 + -0.6 2,460,122 - +0.8 2,460,463 + A4249_RS12260 0.35 +0.0 2,460,463 + A4249_RS12260 0.35 -1.5 2,460,463 + A4249_RS12260 0.35 -1.4 2,460,464 - A4249_RS12260 0.35 +1.2 2,460,464 - A4249_RS12260 0.35 -1.5 2,460,696 + A4249_RS12260 0.61 +0.4 2,460,735 + A4249_RS12260 0.66 +0.0 2,460,735 + A4249_RS12260 0.66 +0.2 2,460,736 - A4249_RS12260 0.66 +0.5 2,460,904 + A4249_RS12260 0.85 +0.8 2,461,006 + +1.2 2,461,700 - +1.8 2,461,803 + A4249_RS12270 0.12 -0.3 2,461,803 + A4249_RS12270 0.12 +0.1 2,461,803 + A4249_RS12270 0.12 +0.1 2,461,803 + A4249_RS12270 0.12 +0.7 2,461,804 - A4249_RS12270 0.12 -0.0 2,461,804 - A4249_RS12270 0.12 -0.2 2,461,804 - A4249_RS12270 0.12 -0.3 2,461,804 - A4249_RS12270 0.12 +0.1 2,461,804 - A4249_RS12270 0.12 -0.4 2,461,929 + A4249_RS12270 0.22 +0.0 2,461,929 + A4249_RS12270 0.22 -1.3 2,461,930 - A4249_RS12270 0.22 +0.0 2,461,930 - A4249_RS12270 0.22 +0.1 2,461,930 - A4249_RS12270 0.22 +0.5 2,461,930 - A4249_RS12270 0.22 +0.4 2,461,930 - A4249_RS12270 0.22 -0.8 2,462,034 + A4249_RS12270 0.31 +0.4 2,462,035 - A4249_RS12270 0.31 +0.3
Or see this region's nucleotide sequence