Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11960

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11955 and A4249_RS11960 are separated by 162 nucleotidesA4249_RS11960 and A4249_RS11965 overlap by 4 nucleotidesA4249_RS11965 and A4249_RS11970 are separated by 42 nucleotides A4249_RS11955: A4249_RS11955 - 2'-deoxycytidine 5'-triphosphate deaminase, at 2,400,738 to 2,401,763 _RS11955 A4249_RS11960: A4249_RS11960 - MFS transporter, at 2,401,926 to 2,403,230 _RS11960 A4249_RS11965: A4249_RS11965 - cupin domain-containing protein, at 2,403,227 to 2,403,703 _RS11965 A4249_RS11970: A4249_RS11970 - succinyl-diaminopimelate desuccinylase, at 2,403,746 to 2,404,933 _RS11970 Position (kb) 2401 2402 2403 2404Strain fitness (log2 ratio) -2 -1 0 1 2at 2401.837 kb on + strandat 2401.848 kb on + strandat 2401.849 kb on - strandat 2401.849 kb on - strandat 2401.865 kb on + strandat 2401.865 kb on + strandat 2401.865 kb on + strandat 2401.865 kb on + strandat 2401.865 kb on + strandat 2401.866 kb on - strandat 2401.866 kb on - strandat 2401.866 kb on - strandat 2401.866 kb on - strandat 2401.866 kb on - strandat 2402.323 kb on + strand, within A4249_RS11960at 2402.323 kb on + strand, within A4249_RS11960at 2402.323 kb on + strand, within A4249_RS11960at 2402.323 kb on + strand, within A4249_RS11960at 2402.323 kb on + strand, within A4249_RS11960at 2402.323 kb on + strand, within A4249_RS11960at 2402.323 kb on + strand, within A4249_RS11960at 2402.324 kb on - strand, within A4249_RS11960at 2402.324 kb on - strand, within A4249_RS11960at 2402.324 kb on - strand, within A4249_RS11960at 2402.324 kb on - strand, within A4249_RS11960at 2402.324 kb on - strand, within A4249_RS11960at 2402.324 kb on - strand, within A4249_RS11960at 2402.324 kb on - strand, within A4249_RS11960at 2402.324 kb on - strand, within A4249_RS11960at 2402.324 kb on - strand, within A4249_RS11960at 2402.324 kb on - strand, within A4249_RS11960at 2402.500 kb on + strand, within A4249_RS11960at 2402.500 kb on + strand, within A4249_RS11960at 2402.500 kb on + strand, within A4249_RS11960at 2402.500 kb on + strand, within A4249_RS11960at 2402.500 kb on + strand, within A4249_RS11960at 2402.500 kb on + strand, within A4249_RS11960at 2402.500 kb on + strand, within A4249_RS11960at 2402.500 kb on + strand, within A4249_RS11960at 2402.500 kb on + strand, within A4249_RS11960at 2402.500 kb on + strand, within A4249_RS11960at 2402.500 kb on + strand, within A4249_RS11960at 2402.501 kb on - strand, within A4249_RS11960at 2402.501 kb on - strand, within A4249_RS11960at 2402.501 kb on - strand, within A4249_RS11960at 2402.501 kb on - strand, within A4249_RS11960at 2402.501 kb on - strand, within A4249_RS11960at 2402.501 kb on - strand, within A4249_RS11960at 2402.626 kb on + strand, within A4249_RS11960at 2402.627 kb on - strand, within A4249_RS11960at 2402.916 kb on + strand, within A4249_RS11960at 2403.001 kb on + strand, within A4249_RS11960at 2403.001 kb on + strand, within A4249_RS11960at 2403.001 kb on + strand, within A4249_RS11960at 2403.001 kb on + strand, within A4249_RS11960at 2403.002 kb on - strand, within A4249_RS11960at 2403.002 kb on - strand, within A4249_RS11960at 2403.002 kb on - strand, within A4249_RS11960at 2403.002 kb on - strand, within A4249_RS11960at 2403.046 kb on + strand, within A4249_RS11960at 2403.046 kb on + strand, within A4249_RS11960at 2403.046 kb on + strand, within A4249_RS11960at 2403.047 kb on - strand, within A4249_RS11960at 2403.047 kb on - strand, within A4249_RS11960at 2403.047 kb on - strand, within A4249_RS11960at 2403.047 kb on - strand, within A4249_RS11960at 2403.047 kb on - strand, within A4249_RS11960at 2403.047 kb on - strand, within A4249_RS11960at 2403.047 kb on - strand, within A4249_RS11960at 2403.047 kb on - strand, within A4249_RS11960at 2403.047 kb on - strand, within A4249_RS11960at 2403.243 kb on + strandat 2403.243 kb on + strandat 2403.243 kb on + strandat 2403.244 kb on - strandat 2403.244 kb on - strandat 2403.244 kb on - strandat 2403.276 kb on + strand, within A4249_RS11965at 2403.397 kb on + strand, within A4249_RS11965at 2403.397 kb on + strand, within A4249_RS11965at 2403.397 kb on + strand, within A4249_RS11965at 2403.398 kb on - strand, within A4249_RS11965at 2403.654 kb on + strand, within A4249_RS11965at 2403.654 kb on + strand, within A4249_RS11965at 2403.655 kb on - strand, within A4249_RS11965at 2403.655 kb on - strand, within A4249_RS11965at 2403.655 kb on - strand, within A4249_RS11965at 2403.655 kb on - strand, within A4249_RS11965at 2403.655 kb on - strand, within A4249_RS11965at 2403.655 kb on - strand, within A4249_RS11965at 2403.739 kb on + strandat 2403.740 kb on - strandat 2403.740 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,401,837 + +1.1
2,401,848 + -1.1
2,401,849 - -1.6
2,401,849 - -0.0
2,401,865 + +0.0
2,401,865 + -0.2
2,401,865 + +0.4
2,401,865 + +0.3
2,401,865 + -0.5
2,401,866 - +0.1
2,401,866 - -0.3
2,401,866 - +0.6
2,401,866 - -0.1
2,401,866 - +1.0
2,402,323 + A4249_RS11960 0.30 -0.2
2,402,323 + A4249_RS11960 0.30 +0.1
2,402,323 + A4249_RS11960 0.30 +0.2
2,402,323 + A4249_RS11960 0.30 +0.1
2,402,323 + A4249_RS11960 0.30 +0.8
2,402,323 + A4249_RS11960 0.30 -0.2
2,402,323 + A4249_RS11960 0.30 +0.0
2,402,324 - A4249_RS11960 0.30 -0.2
2,402,324 - A4249_RS11960 0.30 -0.0
2,402,324 - A4249_RS11960 0.30 +0.6
2,402,324 - A4249_RS11960 0.30 +0.3
2,402,324 - A4249_RS11960 0.30 -0.0
2,402,324 - A4249_RS11960 0.30 -1.1
2,402,324 - A4249_RS11960 0.30 +0.4
2,402,324 - A4249_RS11960 0.30 +0.2
2,402,324 - A4249_RS11960 0.30 +0.9
2,402,324 - A4249_RS11960 0.30 -0.1
2,402,500 + A4249_RS11960 0.44 -0.5
2,402,500 + A4249_RS11960 0.44 -0.4
2,402,500 + A4249_RS11960 0.44 -0.9
2,402,500 + A4249_RS11960 0.44 -0.4
2,402,500 + A4249_RS11960 0.44 +0.7
2,402,500 + A4249_RS11960 0.44 +1.8
2,402,500 + A4249_RS11960 0.44 -0.1
2,402,500 + A4249_RS11960 0.44 +0.3
2,402,500 + A4249_RS11960 0.44 +0.4
2,402,500 + A4249_RS11960 0.44 +0.0
2,402,500 + A4249_RS11960 0.44 -1.3
2,402,501 - A4249_RS11960 0.44 -0.0
2,402,501 - A4249_RS11960 0.44 -1.0
2,402,501 - A4249_RS11960 0.44 +0.2
2,402,501 - A4249_RS11960 0.44 -0.6
2,402,501 - A4249_RS11960 0.44 +0.4
2,402,501 - A4249_RS11960 0.44 +0.4
2,402,626 + A4249_RS11960 0.54 -0.8
2,402,627 - A4249_RS11960 0.54 -0.3
2,402,916 + A4249_RS11960 0.76 -0.4
2,403,001 + A4249_RS11960 0.82 +0.6
2,403,001 + A4249_RS11960 0.82 -1.0
2,403,001 + A4249_RS11960 0.82 -0.2
2,403,001 + A4249_RS11960 0.82 -1.0
2,403,002 - A4249_RS11960 0.82 +0.3
2,403,002 - A4249_RS11960 0.82 -0.1
2,403,002 - A4249_RS11960 0.82 +0.1
2,403,002 - A4249_RS11960 0.82 +0.1
2,403,046 + A4249_RS11960 0.86 +0.5
2,403,046 + A4249_RS11960 0.86 +0.1
2,403,046 + A4249_RS11960 0.86 -1.0
2,403,047 - A4249_RS11960 0.86 +0.2
2,403,047 - A4249_RS11960 0.86 +0.6
2,403,047 - A4249_RS11960 0.86 +0.4
2,403,047 - A4249_RS11960 0.86 +0.7
2,403,047 - A4249_RS11960 0.86 +0.4
2,403,047 - A4249_RS11960 0.86 +0.0
2,403,047 - A4249_RS11960 0.86 +0.1
2,403,047 - A4249_RS11960 0.86 -0.0
2,403,047 - A4249_RS11960 0.86 +0.3
2,403,243 + +0.3
2,403,243 + +0.3
2,403,243 + -0.1
2,403,244 - +0.1
2,403,244 - -0.5
2,403,244 - -0.3
2,403,276 + A4249_RS11965 0.10 -0.3
2,403,397 + A4249_RS11965 0.36 +0.7
2,403,397 + A4249_RS11965 0.36 +0.3
2,403,397 + A4249_RS11965 0.36 -0.0
2,403,398 - A4249_RS11965 0.36 +0.8
2,403,654 + A4249_RS11965 0.90 -0.0
2,403,654 + A4249_RS11965 0.90 +0.3
2,403,655 - A4249_RS11965 0.90 -1.0
2,403,655 - A4249_RS11965 0.90 +0.1
2,403,655 - A4249_RS11965 0.90 -2.0
2,403,655 - A4249_RS11965 0.90 +0.1
2,403,655 - A4249_RS11965 0.90 +1.4
2,403,655 - A4249_RS11965 0.90 +0.2
2,403,739 + -0.5
2,403,740 - +0.1
2,403,740 - -1.8

Or see this region's nucleotide sequence