Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11805

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS11800 and A4249_RS11805 are separated by 13 nucleotidesA4249_RS11805 and A4249_RS11810 are separated by 198 nucleotidesA4249_RS11810 and A4249_RS11815 overlap by 86 nucleotides A4249_RS11800: A4249_RS11800 - DUF3363 domain-containing protein, at 2,369,159 to 2,370,406 _RS11800 A4249_RS11805: A4249_RS11805 - SOS response-associated peptidase, at 2,370,420 to 2,370,998 _RS11805 A4249_RS11810: A4249_RS11810 - damage-inducible protein, at 2,371,197 to 2,371,955 _RS11810 A4249_RS11815: A4249_RS11815 - DNA polymerase Y family protein, at 2,371,870 to 2,373,390 _RS11815 Position (kb) 2370 2371Strain fitness (log2 ratio) -2 -1 0 1 2at 2369.471 kb on + strand, within A4249_RS11800at 2369.472 kb on - strand, within A4249_RS11800at 2369.798 kb on + strand, within A4249_RS11800at 2369.798 kb on + strand, within A4249_RS11800at 2369.799 kb on - strand, within A4249_RS11800at 2369.799 kb on - strand, within A4249_RS11800at 2369.799 kb on - strand, within A4249_RS11800at 2369.799 kb on - strand, within A4249_RS11800at 2369.799 kb on - strand, within A4249_RS11800at 2369.808 kb on - strand, within A4249_RS11800at 2370.083 kb on - strand, within A4249_RS11800at 2370.245 kb on + strand, within A4249_RS11800at 2370.245 kb on + strand, within A4249_RS11800at 2370.245 kb on + strand, within A4249_RS11800at 2370.246 kb on - strand, within A4249_RS11800at 2370.246 kb on - strand, within A4249_RS11800at 2370.281 kb on + strand, within A4249_RS11800at 2370.281 kb on + strand, within A4249_RS11800at 2370.282 kb on - strandat 2370.282 kb on - strandat 2370.560 kb on - strand, within A4249_RS11805at 2370.875 kb on + strand, within A4249_RS11805at 2370.985 kb on + strandat 2370.985 kb on + strandat 2370.985 kb on + strandat 2370.986 kb on - strandat 2370.986 kb on - strandat 2371.013 kb on - strandat 2371.108 kb on + strandat 2371.108 kb on + strandat 2371.108 kb on + strandat 2371.108 kb on + strandat 2371.109 kb on - strandat 2371.142 kb on - strandat 2371.142 kb on - strandat 2371.518 kb on + strand, within A4249_RS11810at 2371.518 kb on + strand, within A4249_RS11810at 2371.518 kb on + strand, within A4249_RS11810at 2371.518 kb on + strand, within A4249_RS11810at 2371.518 kb on + strand, within A4249_RS11810at 2371.518 kb on + strand, within A4249_RS11810at 2371.519 kb on - strand, within A4249_RS11810at 2371.519 kb on - strand, within A4249_RS11810at 2371.519 kb on - strand, within A4249_RS11810at 2371.519 kb on - strand, within A4249_RS11810at 2371.519 kb on - strand, within A4249_RS11810at 2371.519 kb on - strand, within A4249_RS11810at 2371.519 kb on - strand, within A4249_RS11810at 2371.519 kb on - strand, within A4249_RS11810at 2371.519 kb on - strand, within A4249_RS11810at 2371.519 kb on - strand, within A4249_RS11810at 2371.519 kb on - strand, within A4249_RS11810at 2371.519 kb on - strand, within A4249_RS11810at 2371.519 kb on - strand, within A4249_RS11810at 2371.519 kb on - strand, within A4249_RS11810at 2371.519 kb on - strand, within A4249_RS11810at 2371.891 kb on + strandat 2371.891 kb on + strandat 2371.892 kb on - strandat 2371.892 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
2,369,471 + A4249_RS11800 0.25 -0.7
2,369,472 - A4249_RS11800 0.25 -0.0
2,369,798 + A4249_RS11800 0.51 -0.7
2,369,798 + A4249_RS11800 0.51 -1.3
2,369,799 - A4249_RS11800 0.51 -1.0
2,369,799 - A4249_RS11800 0.51 +0.1
2,369,799 - A4249_RS11800 0.51 +0.6
2,369,799 - A4249_RS11800 0.51 +0.8
2,369,799 - A4249_RS11800 0.51 -1.8
2,369,808 - A4249_RS11800 0.52 +0.2
2,370,083 - A4249_RS11800 0.74 +1.0
2,370,245 + A4249_RS11800 0.87 +0.8
2,370,245 + A4249_RS11800 0.87 +1.2
2,370,245 + A4249_RS11800 0.87 +0.1
2,370,246 - A4249_RS11800 0.87 +0.5
2,370,246 - A4249_RS11800 0.87 +0.1
2,370,281 + A4249_RS11800 0.90 +0.2
2,370,281 + A4249_RS11800 0.90 -1.1
2,370,282 - +0.6
2,370,282 - -1.2
2,370,560 - A4249_RS11805 0.24 -0.2
2,370,875 + A4249_RS11805 0.79 -0.5
2,370,985 + +0.2
2,370,985 + +1.0
2,370,985 + +0.3
2,370,986 - +0.2
2,370,986 - -0.6
2,371,013 - +1.8
2,371,108 + +0.8
2,371,108 + -2.1
2,371,108 + -1.3
2,371,108 + -0.8
2,371,109 - +1.0
2,371,142 - +1.0
2,371,142 - +0.4
2,371,518 + A4249_RS11810 0.42 -1.0
2,371,518 + A4249_RS11810 0.42 +0.5
2,371,518 + A4249_RS11810 0.42 -0.2
2,371,518 + A4249_RS11810 0.42 +0.8
2,371,518 + A4249_RS11810 0.42 -1.2
2,371,518 + A4249_RS11810 0.42 -0.4
2,371,519 - A4249_RS11810 0.42 +0.5
2,371,519 - A4249_RS11810 0.42 +0.3
2,371,519 - A4249_RS11810 0.42 -0.2
2,371,519 - A4249_RS11810 0.42 +0.2
2,371,519 - A4249_RS11810 0.42 -0.6
2,371,519 - A4249_RS11810 0.42 -1.1
2,371,519 - A4249_RS11810 0.42 -0.5
2,371,519 - A4249_RS11810 0.42 -0.5
2,371,519 - A4249_RS11810 0.42 -0.2
2,371,519 - A4249_RS11810 0.42 -2.3
2,371,519 - A4249_RS11810 0.42 +0.3
2,371,519 - A4249_RS11810 0.42 -0.1
2,371,519 - A4249_RS11810 0.42 +1.6
2,371,519 - A4249_RS11810 0.42 +0.1
2,371,519 - A4249_RS11810 0.42 -0.3
2,371,891 + -0.2
2,371,891 + +0.2
2,371,892 - -0.8
2,371,892 - -0.2

Or see this region's nucleotide sequence