Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11480

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11475 and A4249_RS11480 overlap by 4 nucleotidesA4249_RS11480 and A4249_RS11485 are separated by 93 nucleotidesA4249_RS11485 and A4249_RS11490 are separated by 398 nucleotides A4249_RS11475: A4249_RS11475 - ligase-associated DNA damage response DEXH box helicase, at 2,309,012 to 2,311,426 _RS11475 A4249_RS11480: A4249_RS11480 - ligase-associated DNA damage response endonuclease PdeM, at 2,311,423 to 2,312,175 _RS11480 A4249_RS11485: A4249_RS11485 - hypothetical protein, at 2,312,269 to 2,312,730 _RS11485 A4249_RS11490: A4249_RS11490 - sensor histidine kinase N-terminal domain-containing protein, at 2,313,129 to 2,314,460 _RS11490 Position (kb) 2311 2312 2313Strain fitness (log2 ratio) -2 -1 0 1 2at 2310.485 kb on + strand, within A4249_RS11475at 2310.485 kb on + strand, within A4249_RS11475at 2310.486 kb on - strand, within A4249_RS11475at 2310.486 kb on - strand, within A4249_RS11475at 2310.486 kb on - strand, within A4249_RS11475at 2310.812 kb on + strand, within A4249_RS11475at 2310.914 kb on + strand, within A4249_RS11475at 2310.915 kb on - strand, within A4249_RS11475at 2311.136 kb on + strand, within A4249_RS11475at 2311.136 kb on + strand, within A4249_RS11475at 2311.136 kb on + strand, within A4249_RS11475at 2311.136 kb on + strand, within A4249_RS11475at 2311.137 kb on - strand, within A4249_RS11475at 2311.485 kb on - strandat 2311.508 kb on + strand, within A4249_RS11480at 2311.508 kb on + strand, within A4249_RS11480at 2311.509 kb on - strand, within A4249_RS11480at 2311.509 kb on - strand, within A4249_RS11480at 2311.509 kb on - strand, within A4249_RS11480at 2311.509 kb on - strand, within A4249_RS11480at 2311.509 kb on - strand, within A4249_RS11480at 2311.509 kb on - strand, within A4249_RS11480at 2311.509 kb on - strand, within A4249_RS11480at 2311.509 kb on - strand, within A4249_RS11480at 2311.622 kb on - strand, within A4249_RS11480at 2311.622 kb on - strand, within A4249_RS11480at 2311.622 kb on - strand, within A4249_RS11480at 2311.622 kb on - strand, within A4249_RS11480at 2311.872 kb on + strand, within A4249_RS11480at 2311.985 kb on - strand, within A4249_RS11480at 2312.070 kb on + strand, within A4249_RS11480at 2312.173 kb on + strandat 2312.173 kb on + strandat 2312.173 kb on + strandat 2312.174 kb on - strandat 2312.174 kb on - strandat 2312.185 kb on - strandat 2312.185 kb on - strandat 2312.416 kb on + strand, within A4249_RS11485at 2312.416 kb on + strand, within A4249_RS11485at 2312.416 kb on + strand, within A4249_RS11485at 2312.416 kb on + strand, within A4249_RS11485at 2312.416 kb on + strand, within A4249_RS11485at 2312.416 kb on + strand, within A4249_RS11485at 2312.417 kb on - strand, within A4249_RS11485at 2312.417 kb on - strand, within A4249_RS11485at 2312.417 kb on - strand, within A4249_RS11485at 2312.417 kb on - strand, within A4249_RS11485at 2312.417 kb on - strand, within A4249_RS11485at 2312.417 kb on - strand, within A4249_RS11485at 2312.417 kb on - strand, within A4249_RS11485at 2312.479 kb on + strand, within A4249_RS11485at 2312.479 kb on + strand, within A4249_RS11485at 2312.479 kb on + strand, within A4249_RS11485at 2312.479 kb on + strand, within A4249_RS11485at 2312.479 kb on + strand, within A4249_RS11485at 2312.479 kb on + strand, within A4249_RS11485at 2312.479 kb on + strand, within A4249_RS11485at 2312.479 kb on + strand, within A4249_RS11485at 2312.480 kb on - strand, within A4249_RS11485at 2312.480 kb on - strand, within A4249_RS11485at 2312.480 kb on - strand, within A4249_RS11485at 2312.480 kb on - strand, within A4249_RS11485at 2312.480 kb on - strand, within A4249_RS11485at 2312.480 kb on - strand, within A4249_RS11485at 2312.728 kb on + strandat 2312.742 kb on + strandat 2312.742 kb on + strandat 2312.742 kb on + strandat 2312.742 kb on + strandat 2312.742 kb on + strandat 2312.742 kb on + strandat 2312.742 kb on + strandat 2312.743 kb on - strandat 2312.743 kb on - strandat 2312.743 kb on - strandat 2312.743 kb on - strandat 2312.743 kb on - strandat 2312.743 kb on - strandat 2312.743 kb on - strandat 2312.743 kb on - strandat 2312.753 kb on - strandat 2312.847 kb on + strandat 2312.847 kb on + strandat 2312.847 kb on + strandat 2312.848 kb on - strandat 2312.848 kb on - strandat 2312.848 kb on - strandat 2312.911 kb on - strandat 2312.911 kb on - strandat 2312.977 kb on + strandat 2312.977 kb on + strandat 2312.977 kb on + strandat 2312.978 kb on - strandat 2312.978 kb on - strandat 2313.007 kb on + strandat 2313.066 kb on + strandat 2313.066 kb on + strandat 2313.066 kb on + strandat 2313.066 kb on + strandat 2313.066 kb on + strandat 2313.066 kb on + strandat 2313.066 kb on + strandat 2313.066 kb on + strandat 2313.066 kb on + strandat 2313.066 kb on + strandat 2313.066 kb on + strandat 2313.066 kb on + strandat 2313.066 kb on + strandat 2313.066 kb on + strandat 2313.066 kb on + strandat 2313.066 kb on + strandat 2313.066 kb on + strandat 2313.066 kb on + strandat 2313.067 kb on - strandat 2313.067 kb on - strandat 2313.067 kb on - strandat 2313.067 kb on - strandat 2313.067 kb on - strandat 2313.067 kb on - strandat 2313.130 kb on + strandat 2313.130 kb on + strandat 2313.130 kb on + strandat 2313.130 kb on + strandat 2313.131 kb on - strandat 2313.146 kb on + strandat 2313.146 kb on + strandat 2313.146 kb on + strandat 2313.147 kb on - strandat 2313.152 kb on + strandat 2313.152 kb on + strandat 2313.152 kb on + strandat 2313.152 kb on + strandat 2313.152 kb on + strandat 2313.152 kb on + strandat 2313.152 kb on + strandat 2313.152 kb on + strandat 2313.152 kb on + strandat 2313.152 kb on + strandat 2313.153 kb on - strandat 2313.153 kb on - strandat 2313.153 kb on - strandat 2313.153 kb on - strandat 2313.153 kb on - strandat 2313.153 kb on - strandat 2313.153 kb on - strandat 2313.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,310,485 + A4249_RS11475 0.61 -0.8
2,310,485 + A4249_RS11475 0.61 +0.1
2,310,486 - A4249_RS11475 0.61 -2.7
2,310,486 - A4249_RS11475 0.61 +0.0
2,310,486 - A4249_RS11475 0.61 +0.5
2,310,812 + A4249_RS11475 0.75 -0.0
2,310,914 + A4249_RS11475 0.79 +0.5
2,310,915 - A4249_RS11475 0.79 -0.1
2,311,136 + A4249_RS11475 0.88 +0.1
2,311,136 + A4249_RS11475 0.88 +0.3
2,311,136 + A4249_RS11475 0.88 -0.8
2,311,136 + A4249_RS11475 0.88 -2.6
2,311,137 - A4249_RS11475 0.88 +0.2
2,311,485 - +0.2
2,311,508 + A4249_RS11480 0.11 -0.6
2,311,508 + A4249_RS11480 0.11 -0.2
2,311,509 - A4249_RS11480 0.11 +0.4
2,311,509 - A4249_RS11480 0.11 +0.6
2,311,509 - A4249_RS11480 0.11 +0.2
2,311,509 - A4249_RS11480 0.11 +0.4
2,311,509 - A4249_RS11480 0.11 -0.5
2,311,509 - A4249_RS11480 0.11 +0.5
2,311,509 - A4249_RS11480 0.11 +0.2
2,311,509 - A4249_RS11480 0.11 +0.2
2,311,622 - A4249_RS11480 0.26 -0.9
2,311,622 - A4249_RS11480 0.26 -1.3
2,311,622 - A4249_RS11480 0.26 -0.1
2,311,622 - A4249_RS11480 0.26 -0.2
2,311,872 + A4249_RS11480 0.60 +0.0
2,311,985 - A4249_RS11480 0.75 +0.5
2,312,070 + A4249_RS11480 0.86 -0.6
2,312,173 + -0.5
2,312,173 + -0.1
2,312,173 + -0.2
2,312,174 - +0.9
2,312,174 - -0.1
2,312,185 - -0.3
2,312,185 - -0.8
2,312,416 + A4249_RS11485 0.32 +0.5
2,312,416 + A4249_RS11485 0.32 -0.8
2,312,416 + A4249_RS11485 0.32 +1.0
2,312,416 + A4249_RS11485 0.32 -0.3
2,312,416 + A4249_RS11485 0.32 +1.4
2,312,416 + A4249_RS11485 0.32 -1.2
2,312,417 - A4249_RS11485 0.32 -1.0
2,312,417 - A4249_RS11485 0.32 -0.8
2,312,417 - A4249_RS11485 0.32 +0.3
2,312,417 - A4249_RS11485 0.32 +0.2
2,312,417 - A4249_RS11485 0.32 -0.1
2,312,417 - A4249_RS11485 0.32 -0.2
2,312,417 - A4249_RS11485 0.32 -0.4
2,312,479 + A4249_RS11485 0.45 +0.5
2,312,479 + A4249_RS11485 0.45 -0.2
2,312,479 + A4249_RS11485 0.45 -0.4
2,312,479 + A4249_RS11485 0.45 -0.4
2,312,479 + A4249_RS11485 0.45 -0.0
2,312,479 + A4249_RS11485 0.45 +0.2
2,312,479 + A4249_RS11485 0.45 -0.4
2,312,479 + A4249_RS11485 0.45 +0.4
2,312,480 - A4249_RS11485 0.46 -0.6
2,312,480 - A4249_RS11485 0.46 -0.3
2,312,480 - A4249_RS11485 0.46 +1.1
2,312,480 - A4249_RS11485 0.46 -0.7
2,312,480 - A4249_RS11485 0.46 -0.8
2,312,480 - A4249_RS11485 0.46 -1.1
2,312,728 + -0.0
2,312,742 + +0.7
2,312,742 + -0.6
2,312,742 + -1.0
2,312,742 + +0.2
2,312,742 + +0.2
2,312,742 + +0.1
2,312,742 + +0.5
2,312,743 - +1.1
2,312,743 - +0.7
2,312,743 - +0.1
2,312,743 - +0.0
2,312,743 - +1.4
2,312,743 - -0.2
2,312,743 - -0.1
2,312,743 - -0.1
2,312,753 - -0.5
2,312,847 + -1.0
2,312,847 + +0.4
2,312,847 + -0.6
2,312,848 - -0.5
2,312,848 - +0.0
2,312,848 - +0.5
2,312,911 - +0.0
2,312,911 - -0.3
2,312,977 + -1.3
2,312,977 + -0.3
2,312,977 + -0.3
2,312,978 - +0.2
2,312,978 - +0.5
2,313,007 + -1.4
2,313,066 + +0.2
2,313,066 + +0.2
2,313,066 + -0.8
2,313,066 + +0.4
2,313,066 + +0.2
2,313,066 + -0.0
2,313,066 + +0.6
2,313,066 + -0.4
2,313,066 + -0.1
2,313,066 + -1.3
2,313,066 + -0.3
2,313,066 + +0.3
2,313,066 + -0.6
2,313,066 + -0.3
2,313,066 + -0.4
2,313,066 + -1.0
2,313,066 + +0.1
2,313,066 + +0.9
2,313,067 - -0.0
2,313,067 - -1.0
2,313,067 - -0.2
2,313,067 - +0.4
2,313,067 - -0.3
2,313,067 - +0.5
2,313,130 + -0.3
2,313,130 + -0.5
2,313,130 + +0.1
2,313,130 + +0.4
2,313,131 - +0.2
2,313,146 + +1.3
2,313,146 + +0.1
2,313,146 + -0.3
2,313,147 - +0.0
2,313,152 + -0.2
2,313,152 + +0.0
2,313,152 + +1.8
2,313,152 + +0.4
2,313,152 + +0.8
2,313,152 + -0.5
2,313,152 + +0.2
2,313,152 + -0.1
2,313,152 + +0.2
2,313,152 + -1.3
2,313,153 - -0.3
2,313,153 - -0.3
2,313,153 - +0.2
2,313,153 - +0.0
2,313,153 - -0.1
2,313,153 - +0.1
2,313,153 - +0.5
2,313,153 - +1.4

Or see this region's nucleotide sequence