Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10900

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS10890 and A4249_RS10895 are separated by 23 nucleotidesA4249_RS10895 and A4249_RS10900 are separated by 328 nucleotidesA4249_RS10900 and A4249_RS10905 are separated by 198 nucleotidesA4249_RS10905 and A4249_RS10910 are separated by 100 nucleotides A4249_RS10890: A4249_RS10890 - large-conductance mechanosensitive channel protein MscL, at 2,190,828 to 2,191,250 _RS10890 A4249_RS10895: A4249_RS10895 - integration host factor subunit beta, at 2,191,274 to 2,191,564 _RS10895 A4249_RS10900: A4249_RS10900 - 30S ribosomal protein S1, at 2,191,893 to 2,193,596 _RS10900 A4249_RS10905: A4249_RS10905 - (d)CMP kinase, at 2,193,795 to 2,194,439 _RS10905 A4249_RS10910: A4249_RS10910 - hypothetical protein, at 2,194,540 to 2,194,821 _RS10910 Position (kb) 2191 2192 2193 2194Strain fitness (log2 ratio) -1 0 1at 2191.018 kb on + strand, within A4249_RS10890at 2191.019 kb on - strand, within A4249_RS10890at 2191.270 kb on + strandat 2191.270 kb on + strandat 2191.270 kb on + strandat 2191.270 kb on + strandat 2191.271 kb on - strandat 2191.819 kb on + strandat 2193.696 kb on - strandat 2194.506 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
2,191,018 + A4249_RS10890 0.45 -0.2
2,191,019 - A4249_RS10890 0.45 +0.0
2,191,270 + +0.6
2,191,270 + -0.6
2,191,270 + +0.6
2,191,270 + -0.4
2,191,271 - -0.2
2,191,819 + +0.1
2,193,696 - +0.3
2,194,506 - +0.8

Or see this region's nucleotide sequence