Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10550

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10540 and A4249_RS10545 are separated by 206 nucleotidesA4249_RS10545 and A4249_RS10550 are separated by 4 nucleotidesA4249_RS10550 and A4249_RS10555 are separated by 58 nucleotidesA4249_RS10555 and A4249_RS10560 overlap by 1 nucleotidesA4249_RS10560 and A4249_RS10565 overlap by 4 nucleotides A4249_RS10540: A4249_RS10540 - DEAD/DEAH box helicase, at 2,118,522 to 2,120,420 _RS10540 A4249_RS10545: A4249_RS10545 - flagellar basal body rod C-terminal domain-containing protein, at 2,120,627 to 2,120,836 _RS10545 A4249_RS10550: A4249_RS10550 - winged helix-turn-helix transcriptional regulator, at 2,120,841 to 2,121,524 _RS10550 A4249_RS10555: A4249_RS10555 - lactoylglutathione lyase, at 2,121,583 to 2,122,026 _RS10555 A4249_RS10560: A4249_RS10560 - SRPBCC family protein, at 2,122,026 to 2,122,487 _RS10560 A4249_RS10565: A4249_RS10565 - VOC family protein, at 2,122,484 to 2,122,966 _RS10565 Position (kb) 2120 2121 2122Strain fitness (log2 ratio) -2 -1 0 1at 2120.045 kb on + strand, within A4249_RS10540at 2120.046 kb on - strand, within A4249_RS10540at 2120.046 kb on - strand, within A4249_RS10540at 2120.131 kb on + strand, within A4249_RS10540at 2120.132 kb on - strand, within A4249_RS10540at 2120.365 kb on + strandat 2120.366 kb on - strandat 2120.421 kb on - strandat 2120.421 kb on - strandat 2120.510 kb on + strandat 2120.510 kb on + strandat 2120.510 kb on + strandat 2120.510 kb on + strandat 2120.511 kb on - strandat 2120.511 kb on - strandat 2120.511 kb on - strandat 2120.511 kb on - strandat 2120.511 kb on - strandat 2120.511 kb on - strandat 2120.512 kb on + strandat 2120.512 kb on + strandat 2120.512 kb on + strandat 2120.512 kb on + strandat 2120.512 kb on + strandat 2120.512 kb on + strandat 2120.512 kb on + strandat 2120.512 kb on + strandat 2120.512 kb on + strandat 2120.513 kb on - strandat 2120.513 kb on - strandat 2120.513 kb on - strandat 2120.513 kb on - strandat 2120.513 kb on - strandat 2120.513 kb on - strandat 2120.513 kb on - strandat 2120.513 kb on - strandat 2120.513 kb on - strandat 2120.513 kb on - strandat 2120.513 kb on - strandat 2120.513 kb on - strandat 2120.513 kb on - strandat 2120.513 kb on - strandat 2120.513 kb on - strandat 2120.520 kb on + strandat 2120.520 kb on + strandat 2120.520 kb on + strandat 2120.521 kb on - strandat 2120.521 kb on - strandat 2120.521 kb on - strandat 2120.521 kb on - strandat 2120.641 kb on + strandat 2120.641 kb on + strandat 2120.641 kb on + strandat 2120.959 kb on + strand, within A4249_RS10550at 2121.242 kb on - strand, within A4249_RS10550at 2121.242 kb on - strand, within A4249_RS10550at 2121.262 kb on + strand, within A4249_RS10550at 2121.262 kb on + strand, within A4249_RS10550at 2121.262 kb on + strand, within A4249_RS10550at 2121.263 kb on - strand, within A4249_RS10550at 2121.263 kb on - strand, within A4249_RS10550at 2121.484 kb on + strandat 2121.484 kb on + strandat 2121.485 kb on - strandat 2121.563 kb on + strandat 2121.563 kb on + strandat 2121.563 kb on + strandat 2121.563 kb on + strandat 2121.563 kb on + strandat 2121.563 kb on + strandat 2121.564 kb on - strandat 2121.564 kb on - strandat 2121.564 kb on - strandat 2121.564 kb on - strandat 2121.643 kb on + strand, within A4249_RS10555at 2121.643 kb on + strand, within A4249_RS10555at 2121.643 kb on + strand, within A4249_RS10555at 2121.644 kb on - strand, within A4249_RS10555at 2121.644 kb on - strand, within A4249_RS10555at 2121.644 kb on - strand, within A4249_RS10555at 2121.644 kb on - strand, within A4249_RS10555at 2121.678 kb on + strand, within A4249_RS10555at 2121.699 kb on + strand, within A4249_RS10555at 2121.699 kb on + strand, within A4249_RS10555at 2121.699 kb on + strand, within A4249_RS10555at 2121.699 kb on + strand, within A4249_RS10555at 2121.699 kb on + strand, within A4249_RS10555at 2121.699 kb on + strand, within A4249_RS10555at 2121.700 kb on - strand, within A4249_RS10555at 2121.700 kb on - strand, within A4249_RS10555at 2121.700 kb on - strand, within A4249_RS10555at 2121.700 kb on - strand, within A4249_RS10555at 2121.700 kb on - strand, within A4249_RS10555at 2121.700 kb on - strand, within A4249_RS10555at 2121.877 kb on - strand, within A4249_RS10555at 2121.913 kb on + strand, within A4249_RS10555at 2121.913 kb on + strand, within A4249_RS10555at 2121.913 kb on + strand, within A4249_RS10555at 2121.913 kb on + strand, within A4249_RS10555at 2121.913 kb on + strand, within A4249_RS10555at 2121.913 kb on + strand, within A4249_RS10555at 2121.914 kb on - strand, within A4249_RS10555at 2121.914 kb on - strand, within A4249_RS10555at 2121.914 kb on - strand, within A4249_RS10555at 2121.914 kb on - strand, within A4249_RS10555at 2121.914 kb on - strand, within A4249_RS10555at 2121.914 kb on - strand, within A4249_RS10555at 2121.914 kb on - strand, within A4249_RS10555at 2121.914 kb on - strand, within A4249_RS10555at 2121.914 kb on - strand, within A4249_RS10555at 2121.914 kb on - strand, within A4249_RS10555at 2121.914 kb on - strand, within A4249_RS10555at 2121.914 kb on - strand, within A4249_RS10555at 2121.914 kb on - strand, within A4249_RS10555at 2121.914 kb on - strand, within A4249_RS10555at 2121.914 kb on - strand, within A4249_RS10555at 2122.095 kb on + strand, within A4249_RS10560at 2122.095 kb on + strand, within A4249_RS10560at 2122.095 kb on + strand, within A4249_RS10560at 2122.095 kb on + strand, within A4249_RS10560at 2122.095 kb on + strand, within A4249_RS10560at 2122.095 kb on + strand, within A4249_RS10560at 2122.095 kb on + strand, within A4249_RS10560at 2122.095 kb on + strand, within A4249_RS10560at 2122.095 kb on + strand, within A4249_RS10560at 2122.106 kb on + strand, within A4249_RS10560at 2122.221 kb on + strand, within A4249_RS10560at 2122.221 kb on + strand, within A4249_RS10560at 2122.222 kb on - strand, within A4249_RS10560at 2122.362 kb on + strand, within A4249_RS10560at 2122.362 kb on + strand, within A4249_RS10560at 2122.362 kb on + strand, within A4249_RS10560

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,120,045 + A4249_RS10540 0.80 +0.4
2,120,046 - A4249_RS10540 0.80 +0.2
2,120,046 - A4249_RS10540 0.80 -0.9
2,120,131 + A4249_RS10540 0.85 -0.3
2,120,132 - A4249_RS10540 0.85 -0.6
2,120,365 + -0.1
2,120,366 - -0.2
2,120,421 - -0.5
2,120,421 - -0.2
2,120,510 + -0.8
2,120,510 + +0.0
2,120,510 + +0.6
2,120,510 + -0.7
2,120,511 - -0.3
2,120,511 - -0.4
2,120,511 - -1.0
2,120,511 - +0.8
2,120,511 - +0.4
2,120,511 - +0.9
2,120,512 + -0.6
2,120,512 + -0.5
2,120,512 + +0.2
2,120,512 + +0.8
2,120,512 + -0.0
2,120,512 + -0.4
2,120,512 + +0.5
2,120,512 + -0.2
2,120,512 + +0.1
2,120,513 - -0.6
2,120,513 - +0.4
2,120,513 - +0.1
2,120,513 - +0.6
2,120,513 - -0.7
2,120,513 - +0.1
2,120,513 - -0.3
2,120,513 - +0.3
2,120,513 - -1.2
2,120,513 - +0.4
2,120,513 - -0.6
2,120,513 - +0.6
2,120,513 - +0.9
2,120,513 - -1.5
2,120,513 - -0.7
2,120,520 + +0.5
2,120,520 + -0.2
2,120,520 + +0.3
2,120,521 - -0.6
2,120,521 - -1.0
2,120,521 - -0.2
2,120,521 - +0.9
2,120,641 + +0.9
2,120,641 + +0.7
2,120,641 + +0.3
2,120,959 + A4249_RS10550 0.17 +0.4
2,121,242 - A4249_RS10550 0.59 +0.2
2,121,242 - A4249_RS10550 0.59 +0.4
2,121,262 + A4249_RS10550 0.62 -2.5
2,121,262 + A4249_RS10550 0.62 +0.0
2,121,262 + A4249_RS10550 0.62 +1.0
2,121,263 - A4249_RS10550 0.62 -0.3
2,121,263 - A4249_RS10550 0.62 -1.0
2,121,484 + +0.1
2,121,484 + -0.2
2,121,485 - -0.1
2,121,563 + +0.0
2,121,563 + +0.5
2,121,563 + +0.4
2,121,563 + +0.7
2,121,563 + -0.4
2,121,563 + +0.2
2,121,564 - -0.2
2,121,564 - +0.5
2,121,564 - -0.0
2,121,564 - -0.2
2,121,643 + A4249_RS10555 0.14 -0.8
2,121,643 + A4249_RS10555 0.14 +0.9
2,121,643 + A4249_RS10555 0.14 +0.4
2,121,644 - A4249_RS10555 0.14 +0.3
2,121,644 - A4249_RS10555 0.14 -0.4
2,121,644 - A4249_RS10555 0.14 -0.7
2,121,644 - A4249_RS10555 0.14 -0.4
2,121,678 + A4249_RS10555 0.21 +0.0
2,121,699 + A4249_RS10555 0.26 +0.0
2,121,699 + A4249_RS10555 0.26 -0.1
2,121,699 + A4249_RS10555 0.26 +0.1
2,121,699 + A4249_RS10555 0.26 +0.5
2,121,699 + A4249_RS10555 0.26 -0.6
2,121,699 + A4249_RS10555 0.26 -0.7
2,121,700 - A4249_RS10555 0.26 -0.8
2,121,700 - A4249_RS10555 0.26 -0.3
2,121,700 - A4249_RS10555 0.26 -0.3
2,121,700 - A4249_RS10555 0.26 +0.3
2,121,700 - A4249_RS10555 0.26 +0.1
2,121,700 - A4249_RS10555 0.26 -0.3
2,121,877 - A4249_RS10555 0.66 -0.3
2,121,913 + A4249_RS10555 0.74 -1.2
2,121,913 + A4249_RS10555 0.74 +0.2
2,121,913 + A4249_RS10555 0.74 -0.6
2,121,913 + A4249_RS10555 0.74 +0.1
2,121,913 + A4249_RS10555 0.74 -1.9
2,121,913 + A4249_RS10555 0.74 +0.3
2,121,914 - A4249_RS10555 0.75 -0.1
2,121,914 - A4249_RS10555 0.75 +0.2
2,121,914 - A4249_RS10555 0.75 -0.2
2,121,914 - A4249_RS10555 0.75 +0.2
2,121,914 - A4249_RS10555 0.75 +0.7
2,121,914 - A4249_RS10555 0.75 +0.5
2,121,914 - A4249_RS10555 0.75 -0.1
2,121,914 - A4249_RS10555 0.75 -0.0
2,121,914 - A4249_RS10555 0.75 -0.4
2,121,914 - A4249_RS10555 0.75 -0.8
2,121,914 - A4249_RS10555 0.75 -0.1
2,121,914 - A4249_RS10555 0.75 -0.6
2,121,914 - A4249_RS10555 0.75 -0.2
2,121,914 - A4249_RS10555 0.75 -0.6
2,121,914 - A4249_RS10555 0.75 -0.5
2,122,095 + A4249_RS10560 0.15 +0.0
2,122,095 + A4249_RS10560 0.15 -0.3
2,122,095 + A4249_RS10560 0.15 -0.1
2,122,095 + A4249_RS10560 0.15 -0.2
2,122,095 + A4249_RS10560 0.15 -0.2
2,122,095 + A4249_RS10560 0.15 -0.1
2,122,095 + A4249_RS10560 0.15 +0.1
2,122,095 + A4249_RS10560 0.15 -0.8
2,122,095 + A4249_RS10560 0.15 +0.1
2,122,106 + A4249_RS10560 0.17 +0.3
2,122,221 + A4249_RS10560 0.42 +0.4
2,122,221 + A4249_RS10560 0.42 -0.5
2,122,222 - A4249_RS10560 0.42 +0.6
2,122,362 + A4249_RS10560 0.73 -0.5
2,122,362 + A4249_RS10560 0.73 +0.3
2,122,362 + A4249_RS10560 0.73 +0.8

Or see this region's nucleotide sequence