Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10200

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10190 and A4249_RS10195 overlap by 32 nucleotidesA4249_RS10195 and A4249_RS10200 are separated by 23 nucleotidesA4249_RS10200 and A4249_RS10205 are separated by 40 nucleotidesA4249_RS10205 and A4249_RS10210 are separated by 174 nucleotides A4249_RS10190: A4249_RS10190 - terminase family protein, at 2,043,087 to 2,044,256 _RS10190 A4249_RS10195: A4249_RS10195 - hypothetical protein, at 2,044,225 to 2,044,761 _RS10195 A4249_RS10200: A4249_RS10200 - YcgN family cysteine cluster protein, at 2,044,785 to 2,045,246 _RS10200 A4249_RS10205: A4249_RS10205 - SMR family transporter, at 2,045,287 to 2,045,625 _RS10205 A4249_RS10210: A4249_RS10210 - ABC-F family ATP-binding cassette domain-containing protein, at 2,045,800 to 2,047,617 _RS10210 Position (kb) 2044 2045 2046Strain fitness (log2 ratio) -2 -1 0 1at 2043.973 kb on + strand, within A4249_RS10190at 2043.973 kb on + strand, within A4249_RS10190at 2043.974 kb on - strand, within A4249_RS10190at 2043.974 kb on - strand, within A4249_RS10190at 2043.974 kb on - strand, within A4249_RS10190at 2044.281 kb on + strand, within A4249_RS10195at 2044.282 kb on - strand, within A4249_RS10195at 2044.282 kb on - strand, within A4249_RS10195at 2044.282 kb on - strand, within A4249_RS10195at 2044.391 kb on + strand, within A4249_RS10195at 2044.391 kb on + strand, within A4249_RS10195at 2044.391 kb on + strand, within A4249_RS10195at 2044.391 kb on + strand, within A4249_RS10195at 2044.392 kb on - strand, within A4249_RS10195at 2044.392 kb on - strand, within A4249_RS10195at 2044.392 kb on - strand, within A4249_RS10195at 2044.392 kb on - strand, within A4249_RS10195at 2044.680 kb on - strand, within A4249_RS10195at 2044.717 kb on + strandat 2044.717 kb on + strandat 2044.717 kb on + strandat 2044.718 kb on - strandat 2044.771 kb on + strandat 2044.782 kb on - strandat 2044.902 kb on - strand, within A4249_RS10200at 2044.988 kb on + strand, within A4249_RS10200at 2044.988 kb on + strand, within A4249_RS10200at 2044.988 kb on + strand, within A4249_RS10200at 2044.988 kb on + strand, within A4249_RS10200at 2044.989 kb on - strand, within A4249_RS10200at 2044.989 kb on - strand, within A4249_RS10200at 2044.989 kb on - strand, within A4249_RS10200at 2044.989 kb on - strand, within A4249_RS10200at 2044.989 kb on - strand, within A4249_RS10200at 2045.065 kb on + strand, within A4249_RS10200at 2045.065 kb on + strand, within A4249_RS10200at 2045.065 kb on + strand, within A4249_RS10200at 2045.066 kb on - strand, within A4249_RS10200at 2045.236 kb on + strandat 2045.237 kb on - strandat 2045.237 kb on - strandat 2045.258 kb on + strandat 2045.258 kb on + strandat 2045.259 kb on - strandat 2045.259 kb on - strandat 2045.442 kb on - strand, within A4249_RS10205at 2045.442 kb on - strand, within A4249_RS10205at 2045.442 kb on - strand, within A4249_RS10205at 2045.486 kb on + strand, within A4249_RS10205at 2045.486 kb on + strand, within A4249_RS10205at 2045.486 kb on + strand, within A4249_RS10205at 2045.486 kb on + strand, within A4249_RS10205at 2045.486 kb on + strand, within A4249_RS10205at 2045.486 kb on + strand, within A4249_RS10205at 2045.486 kb on + strand, within A4249_RS10205at 2045.486 kb on + strand, within A4249_RS10205at 2045.486 kb on + strand, within A4249_RS10205at 2045.487 kb on - strand, within A4249_RS10205at 2045.487 kb on - strand, within A4249_RS10205at 2045.487 kb on - strand, within A4249_RS10205at 2045.487 kb on - strand, within A4249_RS10205at 2045.487 kb on - strand, within A4249_RS10205at 2045.487 kb on - strand, within A4249_RS10205at 2045.487 kb on - strand, within A4249_RS10205at 2045.501 kb on + strand, within A4249_RS10205at 2045.501 kb on + strand, within A4249_RS10205at 2045.502 kb on - strand, within A4249_RS10205at 2045.502 kb on - strand, within A4249_RS10205at 2045.637 kb on - strandat 2045.718 kb on + strandat 2045.719 kb on - strandat 2045.719 kb on - strandat 2045.719 kb on - strandat 2046.019 kb on + strand, within A4249_RS10210at 2046.020 kb on - strand, within A4249_RS10210at 2046.020 kb on - strand, within A4249_RS10210at 2046.020 kb on - strand, within A4249_RS10210at 2046.064 kb on + strand, within A4249_RS10210at 2046.064 kb on + strand, within A4249_RS10210at 2046.065 kb on - strand, within A4249_RS10210at 2046.065 kb on - strand, within A4249_RS10210

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,043,973 + A4249_RS10190 0.76 +0.1
2,043,973 + A4249_RS10190 0.76 -0.6
2,043,974 - A4249_RS10190 0.76 -0.1
2,043,974 - A4249_RS10190 0.76 -0.5
2,043,974 - A4249_RS10190 0.76 -0.3
2,044,281 + A4249_RS10195 0.10 -0.1
2,044,282 - A4249_RS10195 0.11 -0.6
2,044,282 - A4249_RS10195 0.11 +0.4
2,044,282 - A4249_RS10195 0.11 -0.6
2,044,391 + A4249_RS10195 0.31 +0.3
2,044,391 + A4249_RS10195 0.31 +0.4
2,044,391 + A4249_RS10195 0.31 +1.1
2,044,391 + A4249_RS10195 0.31 +0.2
2,044,392 - A4249_RS10195 0.31 -0.4
2,044,392 - A4249_RS10195 0.31 -0.3
2,044,392 - A4249_RS10195 0.31 -0.2
2,044,392 - A4249_RS10195 0.31 -0.1
2,044,680 - A4249_RS10195 0.85 -0.5
2,044,717 + -0.8
2,044,717 + +0.1
2,044,717 + +0.2
2,044,718 - -1.0
2,044,771 + +0.7
2,044,782 - -0.8
2,044,902 - A4249_RS10200 0.25 -0.8
2,044,988 + A4249_RS10200 0.44 +0.1
2,044,988 + A4249_RS10200 0.44 +0.5
2,044,988 + A4249_RS10200 0.44 +0.8
2,044,988 + A4249_RS10200 0.44 -0.6
2,044,989 - A4249_RS10200 0.44 +0.5
2,044,989 - A4249_RS10200 0.44 +1.0
2,044,989 - A4249_RS10200 0.44 +0.2
2,044,989 - A4249_RS10200 0.44 -1.3
2,044,989 - A4249_RS10200 0.44 +0.3
2,045,065 + A4249_RS10200 0.61 -0.8
2,045,065 + A4249_RS10200 0.61 +0.0
2,045,065 + A4249_RS10200 0.61 +0.7
2,045,066 - A4249_RS10200 0.61 -0.2
2,045,236 + -0.3
2,045,237 - +0.4
2,045,237 - +0.0
2,045,258 + +0.0
2,045,258 + +0.2
2,045,259 - -0.3
2,045,259 - -0.7
2,045,442 - A4249_RS10205 0.46 +0.0
2,045,442 - A4249_RS10205 0.46 -0.9
2,045,442 - A4249_RS10205 0.46 -0.2
2,045,486 + A4249_RS10205 0.59 +1.0
2,045,486 + A4249_RS10205 0.59 -1.2
2,045,486 + A4249_RS10205 0.59 -0.1
2,045,486 + A4249_RS10205 0.59 +0.5
2,045,486 + A4249_RS10205 0.59 -0.2
2,045,486 + A4249_RS10205 0.59 -1.2
2,045,486 + A4249_RS10205 0.59 -0.5
2,045,486 + A4249_RS10205 0.59 +0.0
2,045,486 + A4249_RS10205 0.59 -1.8
2,045,487 - A4249_RS10205 0.59 +0.1
2,045,487 - A4249_RS10205 0.59 -0.0
2,045,487 - A4249_RS10205 0.59 +0.4
2,045,487 - A4249_RS10205 0.59 -0.5
2,045,487 - A4249_RS10205 0.59 -1.0
2,045,487 - A4249_RS10205 0.59 -0.5
2,045,487 - A4249_RS10205 0.59 -0.3
2,045,501 + A4249_RS10205 0.63 +0.1
2,045,501 + A4249_RS10205 0.63 -0.4
2,045,502 - A4249_RS10205 0.63 +0.8
2,045,502 - A4249_RS10205 0.63 -0.4
2,045,637 - -1.0
2,045,718 + -0.3
2,045,719 - -0.4
2,045,719 - -0.7
2,045,719 - -0.7
2,046,019 + A4249_RS10210 0.12 +0.4
2,046,020 - A4249_RS10210 0.12 -1.0
2,046,020 - A4249_RS10210 0.12 -0.4
2,046,020 - A4249_RS10210 0.12 -0.1
2,046,064 + A4249_RS10210 0.15 -0.5
2,046,064 + A4249_RS10210 0.15 +0.0
2,046,065 - A4249_RS10210 0.15 -0.8
2,046,065 - A4249_RS10210 0.15 -0.0

Or see this region's nucleotide sequence