Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09830

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09820 and A4249_RS09825 are separated by 82 nucleotidesA4249_RS09825 and A4249_RS09830 are separated by 4 nucleotidesA4249_RS09830 and A4249_RS09835 are separated by 85 nucleotidesA4249_RS09835 and A4249_RS09840 overlap by 4 nucleotides A4249_RS09820: A4249_RS09820 - branched-chain amino acid aminotransferase, at 1,957,106 to 1,957,984 _RS09820 A4249_RS09825: A4249_RS09825 - response regulator transcription factor, at 1,958,067 to 1,958,804 _RS09825 A4249_RS09830: A4249_RS09830 - ATP-binding protein, at 1,958,809 to 1,960,176 _RS09830 A4249_RS09835: A4249_RS09835 - hypothetical protein, at 1,960,262 to 1,960,738 _RS09835 A4249_RS09840: A4249_RS09840 - pyrroline-5-carboxylate reductase dimerization domain-containing protein, at 1,960,735 to 1,961,523 _RS09840 Position (kb) 1958 1959 1960 1961Strain fitness (log2 ratio) -2 -1 0 1 2at 1958.017 kb on - strandat 1959.020 kb on - strand, within A4249_RS09830at 1959.020 kb on - strand, within A4249_RS09830at 1959.020 kb on - strand, within A4249_RS09830at 1959.020 kb on - strand, within A4249_RS09830at 1959.020 kb on - strand, within A4249_RS09830at 1959.200 kb on - strand, within A4249_RS09830at 1959.230 kb on - strand, within A4249_RS09830at 1959.312 kb on + strand, within A4249_RS09830at 1959.312 kb on + strand, within A4249_RS09830at 1959.313 kb on - strand, within A4249_RS09830at 1959.313 kb on - strand, within A4249_RS09830at 1959.313 kb on - strand, within A4249_RS09830at 1959.669 kb on + strand, within A4249_RS09830at 1959.669 kb on + strand, within A4249_RS09830at 1959.669 kb on + strand, within A4249_RS09830at 1959.669 kb on + strand, within A4249_RS09830at 1959.669 kb on + strand, within A4249_RS09830at 1959.669 kb on + strand, within A4249_RS09830at 1959.669 kb on + strand, within A4249_RS09830at 1959.669 kb on + strand, within A4249_RS09830at 1959.670 kb on - strand, within A4249_RS09830at 1959.670 kb on - strand, within A4249_RS09830at 1959.670 kb on - strand, within A4249_RS09830at 1959.670 kb on - strand, within A4249_RS09830at 1959.976 kb on + strand, within A4249_RS09830at 1959.976 kb on + strand, within A4249_RS09830at 1959.976 kb on + strand, within A4249_RS09830at 1959.976 kb on + strand, within A4249_RS09830at 1959.976 kb on + strand, within A4249_RS09830at 1959.976 kb on + strand, within A4249_RS09830at 1959.976 kb on + strand, within A4249_RS09830at 1959.976 kb on + strand, within A4249_RS09830at 1959.976 kb on + strand, within A4249_RS09830at 1959.976 kb on + strand, within A4249_RS09830at 1959.976 kb on + strand, within A4249_RS09830at 1959.976 kb on + strand, within A4249_RS09830at 1959.977 kb on - strand, within A4249_RS09830at 1959.977 kb on - strand, within A4249_RS09830at 1959.977 kb on - strand, within A4249_RS09830at 1959.977 kb on - strand, within A4249_RS09830at 1959.977 kb on - strand, within A4249_RS09830at 1960.175 kb on - strandat 1960.479 kb on + strand, within A4249_RS09835at 1960.479 kb on + strand, within A4249_RS09835at 1960.480 kb on - strand, within A4249_RS09835at 1960.480 kb on - strand, within A4249_RS09835at 1960.480 kb on - strand, within A4249_RS09835at 1960.628 kb on + strand, within A4249_RS09835at 1960.628 kb on + strand, within A4249_RS09835at 1960.628 kb on + strand, within A4249_RS09835at 1960.628 kb on + strand, within A4249_RS09835at 1960.628 kb on + strand, within A4249_RS09835at 1960.629 kb on - strand, within A4249_RS09835at 1960.629 kb on - strand, within A4249_RS09835at 1960.629 kb on - strand, within A4249_RS09835at 1960.629 kb on - strand, within A4249_RS09835at 1960.629 kb on - strand, within A4249_RS09835at 1960.629 kb on - strand, within A4249_RS09835at 1960.634 kb on + strand, within A4249_RS09835at 1960.634 kb on + strand, within A4249_RS09835at 1960.634 kb on + strand, within A4249_RS09835at 1960.634 kb on + strand, within A4249_RS09835at 1960.635 kb on - strand, within A4249_RS09835at 1960.635 kb on - strand, within A4249_RS09835at 1960.667 kb on + strand, within A4249_RS09835at 1960.667 kb on + strand, within A4249_RS09835at 1960.668 kb on - strand, within A4249_RS09835at 1960.736 kb on + strandat 1960.997 kb on + strand, within A4249_RS09840at 1960.997 kb on + strand, within A4249_RS09840at 1960.997 kb on + strand, within A4249_RS09840at 1960.997 kb on + strand, within A4249_RS09840at 1960.997 kb on + strand, within A4249_RS09840at 1960.998 kb on - strand, within A4249_RS09840at 1960.998 kb on - strand, within A4249_RS09840at 1960.998 kb on - strand, within A4249_RS09840at 1960.998 kb on - strand, within A4249_RS09840at 1961.003 kb on + strand, within A4249_RS09840at 1961.003 kb on + strand, within A4249_RS09840at 1961.003 kb on + strand, within A4249_RS09840at 1961.003 kb on + strand, within A4249_RS09840at 1961.003 kb on + strand, within A4249_RS09840at 1961.003 kb on + strand, within A4249_RS09840at 1961.004 kb on - strand, within A4249_RS09840

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,958,017 - +2.2
1,959,020 - A4249_RS09830 0.15 +0.2
1,959,020 - A4249_RS09830 0.15 -0.2
1,959,020 - A4249_RS09830 0.15 +0.2
1,959,020 - A4249_RS09830 0.15 +0.2
1,959,020 - A4249_RS09830 0.15 -0.6
1,959,200 - A4249_RS09830 0.29 +0.4
1,959,230 - A4249_RS09830 0.31 -1.0
1,959,312 + A4249_RS09830 0.37 -0.8
1,959,312 + A4249_RS09830 0.37 +0.7
1,959,313 - A4249_RS09830 0.37 -0.5
1,959,313 - A4249_RS09830 0.37 -0.0
1,959,313 - A4249_RS09830 0.37 -0.5
1,959,669 + A4249_RS09830 0.63 +0.0
1,959,669 + A4249_RS09830 0.63 +0.6
1,959,669 + A4249_RS09830 0.63 +1.5
1,959,669 + A4249_RS09830 0.63 +0.2
1,959,669 + A4249_RS09830 0.63 -0.2
1,959,669 + A4249_RS09830 0.63 +0.8
1,959,669 + A4249_RS09830 0.63 +1.2
1,959,669 + A4249_RS09830 0.63 -0.2
1,959,670 - A4249_RS09830 0.63 -0.4
1,959,670 - A4249_RS09830 0.63 +1.8
1,959,670 - A4249_RS09830 0.63 +1.8
1,959,670 - A4249_RS09830 0.63 +1.2
1,959,976 + A4249_RS09830 0.85 +0.5
1,959,976 + A4249_RS09830 0.85 +0.0
1,959,976 + A4249_RS09830 0.85 +0.8
1,959,976 + A4249_RS09830 0.85 -0.7
1,959,976 + A4249_RS09830 0.85 -0.2
1,959,976 + A4249_RS09830 0.85 +0.6
1,959,976 + A4249_RS09830 0.85 -0.6
1,959,976 + A4249_RS09830 0.85 +0.2
1,959,976 + A4249_RS09830 0.85 +0.2
1,959,976 + A4249_RS09830 0.85 -0.7
1,959,976 + A4249_RS09830 0.85 +1.2
1,959,976 + A4249_RS09830 0.85 -1.4
1,959,977 - A4249_RS09830 0.85 -0.2
1,959,977 - A4249_RS09830 0.85 +0.2
1,959,977 - A4249_RS09830 0.85 -0.2
1,959,977 - A4249_RS09830 0.85 +0.5
1,959,977 - A4249_RS09830 0.85 -2.4
1,960,175 - +2.3
1,960,479 + A4249_RS09835 0.45 +0.1
1,960,479 + A4249_RS09835 0.45 +1.4
1,960,480 - A4249_RS09835 0.46 +0.1
1,960,480 - A4249_RS09835 0.46 -0.2
1,960,480 - A4249_RS09835 0.46 +0.2
1,960,628 + A4249_RS09835 0.77 +1.0
1,960,628 + A4249_RS09835 0.77 -0.1
1,960,628 + A4249_RS09835 0.77 +0.8
1,960,628 + A4249_RS09835 0.77 +0.2
1,960,628 + A4249_RS09835 0.77 +0.7
1,960,629 - A4249_RS09835 0.77 -0.6
1,960,629 - A4249_RS09835 0.77 -1.2
1,960,629 - A4249_RS09835 0.77 -0.2
1,960,629 - A4249_RS09835 0.77 +0.2
1,960,629 - A4249_RS09835 0.77 -0.3
1,960,629 - A4249_RS09835 0.77 -1.0
1,960,634 + A4249_RS09835 0.78 -0.3
1,960,634 + A4249_RS09835 0.78 -0.2
1,960,634 + A4249_RS09835 0.78 -0.8
1,960,634 + A4249_RS09835 0.78 -0.1
1,960,635 - A4249_RS09835 0.78 +0.6
1,960,635 - A4249_RS09835 0.78 +0.4
1,960,667 + A4249_RS09835 0.85 -0.6
1,960,667 + A4249_RS09835 0.85 +0.3
1,960,668 - A4249_RS09835 0.85 +0.3
1,960,736 + +1.0
1,960,997 + A4249_RS09840 0.33 +0.2
1,960,997 + A4249_RS09840 0.33 +0.4
1,960,997 + A4249_RS09840 0.33 -0.2
1,960,997 + A4249_RS09840 0.33 -0.2
1,960,997 + A4249_RS09840 0.33 -0.2
1,960,998 - A4249_RS09840 0.33 +0.5
1,960,998 - A4249_RS09840 0.33 +0.3
1,960,998 - A4249_RS09840 0.33 -0.0
1,960,998 - A4249_RS09840 0.33 -0.0
1,961,003 + A4249_RS09840 0.34 +0.8
1,961,003 + A4249_RS09840 0.34 -0.3
1,961,003 + A4249_RS09840 0.34 -0.2
1,961,003 + A4249_RS09840 0.34 +0.4
1,961,003 + A4249_RS09840 0.34 -0.0
1,961,003 + A4249_RS09840 0.34 -0.2
1,961,004 - A4249_RS09840 0.34 -0.6

Or see this region's nucleotide sequence