Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09605

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS09600 and A4249_RS09605 are separated by 17 nucleotidesA4249_RS09605 and A4249_RS09610 overlap by 1 nucleotides A4249_RS09600: A4249_RS09600 - hypothetical protein, at 1,915,792 to 1,916,712 _RS09600 A4249_RS09605: A4249_RS09605 - DUF6468 domain-containing protein, at 1,916,730 to 1,917,311 _RS09605 A4249_RS09610: A4249_RS09610 - flagellar motor switch protein FliM, at 1,917,311 to 1,918,354 _RS09610 Position (kb) 1916 1917 1918Strain fitness (log2 ratio) -2 -1 0 1 2at 1915.776 kb on + strandat 1915.776 kb on + strandat 1915.777 kb on - strandat 1915.787 kb on + strandat 1915.787 kb on + strandat 1915.787 kb on + strandat 1915.787 kb on + strandat 1915.788 kb on - strandat 1915.788 kb on - strandat 1915.788 kb on - strandat 1915.788 kb on - strandat 1915.788 kb on - strandat 1915.788 kb on - strandat 1915.788 kb on - strandat 1915.793 kb on + strandat 1915.841 kb on + strandat 1915.841 kb on + strandat 1915.842 kb on - strandat 1915.842 kb on - strandat 1915.842 kb on - strandat 1915.842 kb on - strandat 1915.965 kb on + strand, within A4249_RS09600at 1915.965 kb on + strand, within A4249_RS09600at 1916.047 kb on - strand, within A4249_RS09600at 1916.273 kb on + strand, within A4249_RS09600at 1916.273 kb on + strand, within A4249_RS09600at 1916.273 kb on + strand, within A4249_RS09600at 1916.274 kb on - strand, within A4249_RS09600at 1916.274 kb on - strand, within A4249_RS09600at 1916.274 kb on - strand, within A4249_RS09600at 1916.274 kb on - strand, within A4249_RS09600at 1916.759 kb on + strandat 1916.759 kb on + strandat 1916.759 kb on + strandat 1916.759 kb on + strandat 1917.092 kb on + strand, within A4249_RS09605at 1917.092 kb on + strand, within A4249_RS09605at 1917.093 kb on - strand, within A4249_RS09605at 1917.254 kb on - strandat 1917.296 kb on + strandat 1917.296 kb on + strandat 1917.297 kb on - strandat 1917.369 kb on - strandat 1917.369 kb on - strandat 1917.369 kb on - strandat 1917.658 kb on - strand, within A4249_RS09610at 1917.879 kb on + strand, within A4249_RS09610at 1917.879 kb on + strand, within A4249_RS09610at 1917.879 kb on + strand, within A4249_RS09610at 1917.879 kb on + strand, within A4249_RS09610at 1917.880 kb on - strand, within A4249_RS09610at 1917.948 kb on + strand, within A4249_RS09610at 1917.949 kb on - strand, within A4249_RS09610at 1917.949 kb on - strand, within A4249_RS09610at 1917.949 kb on - strand, within A4249_RS09610at 1917.981 kb on + strand, within A4249_RS09610at 1917.981 kb on + strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1917.982 kb on - strand, within A4249_RS09610at 1918.045 kb on - strand, within A4249_RS09610at 1918.069 kb on + strand, within A4249_RS09610at 1918.069 kb on + strand, within A4249_RS09610at 1918.069 kb on + strand, within A4249_RS09610at 1918.069 kb on + strand, within A4249_RS09610at 1918.069 kb on + strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.070 kb on - strand, within A4249_RS09610at 1918.076 kb on + strand, within A4249_RS09610at 1918.076 kb on + strand, within A4249_RS09610at 1918.176 kb on + strand, within A4249_RS09610at 1918.176 kb on + strand, within A4249_RS09610at 1918.176 kb on + strand, within A4249_RS09610at 1918.177 kb on - strand, within A4249_RS09610at 1918.208 kb on + strand, within A4249_RS09610at 1918.209 kb on - strand, within A4249_RS09610at 1918.209 kb on - strand, within A4249_RS09610at 1918.209 kb on - strand, within A4249_RS09610at 1918.261 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
1,915,776 + -0.8
1,915,776 + +1.2
1,915,777 - +0.6
1,915,787 + -0.7
1,915,787 + -0.7
1,915,787 + -0.6
1,915,787 + +0.0
1,915,788 - +0.2
1,915,788 - -1.3
1,915,788 - -0.9
1,915,788 - +0.3
1,915,788 - -2.7
1,915,788 - -0.2
1,915,788 - -1.0
1,915,793 + -0.3
1,915,841 + +0.2
1,915,841 + -0.0
1,915,842 - -0.4
1,915,842 - -0.5
1,915,842 - -1.3
1,915,842 - +0.4
1,915,965 + A4249_RS09600 0.19 +0.2
1,915,965 + A4249_RS09600 0.19 -0.7
1,916,047 - A4249_RS09600 0.28 -0.3
1,916,273 + A4249_RS09600 0.52 +0.5
1,916,273 + A4249_RS09600 0.52 -0.4
1,916,273 + A4249_RS09600 0.52 -0.4
1,916,274 - A4249_RS09600 0.52 -0.8
1,916,274 - A4249_RS09600 0.52 -0.3
1,916,274 - A4249_RS09600 0.52 +0.5
1,916,274 - A4249_RS09600 0.52 -0.5
1,916,759 + +1.1
1,916,759 + -0.8
1,916,759 + -0.8
1,916,759 + +0.4
1,917,092 + A4249_RS09605 0.62 +0.7
1,917,092 + A4249_RS09605 0.62 -0.3
1,917,093 - A4249_RS09605 0.62 -1.0
1,917,254 - -0.2
1,917,296 + +0.6
1,917,296 + +1.2
1,917,297 - +0.3
1,917,369 - -1.4
1,917,369 - -1.1
1,917,369 - +0.5
1,917,658 - A4249_RS09610 0.33 +1.2
1,917,879 + A4249_RS09610 0.54 -0.0
1,917,879 + A4249_RS09610 0.54 -0.6
1,917,879 + A4249_RS09610 0.54 +1.2
1,917,879 + A4249_RS09610 0.54 +0.7
1,917,880 - A4249_RS09610 0.55 +0.6
1,917,948 + A4249_RS09610 0.61 -0.3
1,917,949 - A4249_RS09610 0.61 -1.0
1,917,949 - A4249_RS09610 0.61 +0.3
1,917,949 - A4249_RS09610 0.61 +0.1
1,917,981 + A4249_RS09610 0.64 -0.4
1,917,981 + A4249_RS09610 0.64 +0.1
1,917,982 - A4249_RS09610 0.64 -0.5
1,917,982 - A4249_RS09610 0.64 -0.6
1,917,982 - A4249_RS09610 0.64 -1.5
1,917,982 - A4249_RS09610 0.64 -0.1
1,917,982 - A4249_RS09610 0.64 +0.2
1,917,982 - A4249_RS09610 0.64 -0.5
1,917,982 - A4249_RS09610 0.64 -0.1
1,917,982 - A4249_RS09610 0.64 +0.5
1,917,982 - A4249_RS09610 0.64 -0.0
1,918,045 - A4249_RS09610 0.70 +1.4
1,918,069 + A4249_RS09610 0.73 +1.4
1,918,069 + A4249_RS09610 0.73 -0.9
1,918,069 + A4249_RS09610 0.73 +2.3
1,918,069 + A4249_RS09610 0.73 +0.0
1,918,069 + A4249_RS09610 0.73 -1.2
1,918,070 - A4249_RS09610 0.73 -0.4
1,918,070 - A4249_RS09610 0.73 +0.2
1,918,070 - A4249_RS09610 0.73 -0.4
1,918,070 - A4249_RS09610 0.73 -0.1
1,918,070 - A4249_RS09610 0.73 -1.5
1,918,070 - A4249_RS09610 0.73 +0.4
1,918,070 - A4249_RS09610 0.73 +0.6
1,918,070 - A4249_RS09610 0.73 -0.6
1,918,070 - A4249_RS09610 0.73 +0.5
1,918,076 + A4249_RS09610 0.73 +0.1
1,918,076 + A4249_RS09610 0.73 -0.5
1,918,176 + A4249_RS09610 0.83 +0.5
1,918,176 + A4249_RS09610 0.83 +0.4
1,918,176 + A4249_RS09610 0.83 -0.0
1,918,177 - A4249_RS09610 0.83 +0.9
1,918,208 + A4249_RS09610 0.86 +0.2
1,918,209 - A4249_RS09610 0.86 +0.1
1,918,209 - A4249_RS09610 0.86 -2.6
1,918,209 - A4249_RS09610 0.86 +0.1
1,918,261 + -0.4

Or see this region's nucleotide sequence