Experiment: Adenine 0.74 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS09500 and A4249_RS09505 are separated by 424 nucleotides A4249_RS09505 and A4249_RS09510 are separated by 52 nucleotides A4249_RS09510 and A4249_RS09515 are separated by 7 nucleotides A4249_RS09515 and A4249_RS09520 are separated by 62 nucleotides
A4249_RS09500: A4249_RS09500 - 3-oxoacyl-ACP reductase, at 1,897,642 to 1,898,400
_RS09500
A4249_RS09505: A4249_RS09505 - DNA-3-methyladenine glycosylase I, at 1,898,825 to 1,899,433
_RS09505
A4249_RS09510: A4249_RS09510 - ribonuclease HII, at 1,899,486 to 1,900,067
_RS09510
A4249_RS09515: A4249_RS09515 - hypothetical protein, at 1,900,075 to 1,900,353
_RS09515
A4249_RS09520: A4249_RS09520 - DNA adenine methylase, at 1,900,416 to 1,901,453
_RS09520
Position (kb)
1898
1899
1900 Strain fitness (log2 ratio)
-2
-1
0
1 at 1897.915 kb on + strand, within A4249_RS09500 at 1897.915 kb on + strand, within A4249_RS09500 at 1897.916 kb on - strand, within A4249_RS09500 at 1897.916 kb on - strand, within A4249_RS09500 at 1897.916 kb on - strand, within A4249_RS09500 at 1897.916 kb on - strand, within A4249_RS09500 at 1897.916 kb on - strand, within A4249_RS09500 at 1898.104 kb on + strand, within A4249_RS09500 at 1898.105 kb on - strand, within A4249_RS09500 at 1898.105 kb on - strand, within A4249_RS09500 at 1898.113 kb on + strand, within A4249_RS09500 at 1898.113 kb on + strand, within A4249_RS09500 at 1898.113 kb on + strand, within A4249_RS09500 at 1898.113 kb on + strand, within A4249_RS09500 at 1898.114 kb on - strand, within A4249_RS09500 at 1898.114 kb on - strand, within A4249_RS09500 at 1898.114 kb on - strand, within A4249_RS09500 at 1898.114 kb on - strand, within A4249_RS09500 at 1898.114 kb on - strand, within A4249_RS09500 at 1898.580 kb on + strand at 1898.581 kb on - strand at 1898.662 kb on + strand at 1898.663 kb on - strand at 1898.667 kb on + strand at 1898.667 kb on + strand at 1898.667 kb on + strand at 1898.668 kb on - strand at 1898.668 kb on - strand at 1898.731 kb on + strand at 1898.731 kb on + strand at 1898.731 kb on + strand at 1898.740 kb on + strand at 1898.741 kb on - strand at 1898.749 kb on + strand at 1898.749 kb on + strand at 1898.749 kb on + strand at 1898.749 kb on + strand at 1898.749 kb on + strand at 1898.750 kb on - strand at 1898.750 kb on - strand at 1898.750 kb on - strand at 1898.750 kb on - strand at 1898.824 kb on + strand at 1898.824 kb on + strand at 1898.824 kb on + strand at 1898.824 kb on + strand at 1898.891 kb on + strand, within A4249_RS09505 at 1898.891 kb on + strand, within A4249_RS09505 at 1898.891 kb on + strand, within A4249_RS09505 at 1898.891 kb on + strand, within A4249_RS09505 at 1898.892 kb on - strand, within A4249_RS09505 at 1898.892 kb on - strand, within A4249_RS09505 at 1898.892 kb on - strand, within A4249_RS09505 at 1898.892 kb on - strand, within A4249_RS09505 at 1898.892 kb on - strand, within A4249_RS09505 at 1899.066 kb on - strand, within A4249_RS09505 at 1899.239 kb on + strand, within A4249_RS09505 at 1899.240 kb on - strand, within A4249_RS09505 at 1899.248 kb on + strand, within A4249_RS09505 at 1899.249 kb on - strand, within A4249_RS09505 at 1899.341 kb on + strand, within A4249_RS09505 at 1899.341 kb on + strand, within A4249_RS09505 at 1899.341 kb on + strand, within A4249_RS09505 at 1899.342 kb on - strand, within A4249_RS09505 at 1899.342 kb on - strand, within A4249_RS09505 at 1899.432 kb on - strand at 1899.571 kb on + strand, within A4249_RS09510 at 1899.571 kb on + strand, within A4249_RS09510 at 1899.572 kb on - strand, within A4249_RS09510 at 1899.572 kb on - strand, within A4249_RS09510 at 1899.582 kb on + strand, within A4249_RS09510 at 1899.804 kb on + strand, within A4249_RS09510 at 1899.804 kb on + strand, within A4249_RS09510 at 1899.805 kb on - strand, within A4249_RS09510 at 1899.805 kb on - strand, within A4249_RS09510 at 1899.805 kb on - strand, within A4249_RS09510 at 1899.805 kb on - strand, within A4249_RS09510 at 1899.862 kb on + strand, within A4249_RS09510 at 1899.942 kb on + strand, within A4249_RS09510 at 1899.960 kb on - strand, within A4249_RS09510 at 1899.966 kb on + strand, within A4249_RS09510 at 1899.966 kb on + strand, within A4249_RS09510 at 1899.966 kb on + strand, within A4249_RS09510 at 1899.966 kb on + strand, within A4249_RS09510 at 1899.967 kb on - strand, within A4249_RS09510 at 1899.967 kb on - strand, within A4249_RS09510 at 1899.967 kb on - strand, within A4249_RS09510 at 1900.224 kb on - strand, within A4249_RS09515 at 1900.305 kb on - strand, within A4249_RS09515 at 1900.305 kb on - strand, within A4249_RS09515 at 1900.305 kb on - strand, within A4249_RS09515 at 1900.337 kb on + strand at 1900.337 kb on + strand at 1900.337 kb on + strand at 1900.337 kb on + strand at 1900.338 kb on - strand at 1900.338 kb on - strand at 1900.353 kb on + strand at 1900.354 kb on - strand at 1900.391 kb on + strand at 1900.417 kb on + strand at 1900.417 kb on + strand at 1900.417 kb on + strand at 1900.417 kb on + strand at 1900.418 kb on - strand at 1900.418 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C) remove 1,897,915 + A4249_RS09500 0.36 -0.3 1,897,915 + A4249_RS09500 0.36 +0.6 1,897,916 - A4249_RS09500 0.36 +1.1 1,897,916 - A4249_RS09500 0.36 -0.7 1,897,916 - A4249_RS09500 0.36 -0.9 1,897,916 - A4249_RS09500 0.36 +1.2 1,897,916 - A4249_RS09500 0.36 +0.4 1,898,104 + A4249_RS09500 0.61 -0.2 1,898,105 - A4249_RS09500 0.61 +0.3 1,898,105 - A4249_RS09500 0.61 +0.3 1,898,113 + A4249_RS09500 0.62 +0.2 1,898,113 + A4249_RS09500 0.62 -1.3 1,898,113 + A4249_RS09500 0.62 +0.2 1,898,113 + A4249_RS09500 0.62 -0.1 1,898,114 - A4249_RS09500 0.62 -0.5 1,898,114 - A4249_RS09500 0.62 +0.2 1,898,114 - A4249_RS09500 0.62 -0.1 1,898,114 - A4249_RS09500 0.62 -0.4 1,898,114 - A4249_RS09500 0.62 -0.2 1,898,580 + -0.1 1,898,581 - -0.0 1,898,662 + +1.1 1,898,663 - -0.3 1,898,667 + -0.0 1,898,667 + +0.4 1,898,667 + +0.1 1,898,668 - +0.3 1,898,668 - +0.2 1,898,731 + +1.3 1,898,731 + +0.0 1,898,731 + +0.4 1,898,740 + -0.4 1,898,741 - +0.5 1,898,749 + +0.0 1,898,749 + -0.5 1,898,749 + +0.2 1,898,749 + +0.4 1,898,749 + -1.4 1,898,750 - -0.4 1,898,750 - -0.2 1,898,750 - -0.1 1,898,750 - +0.2 1,898,824 + +0.1 1,898,824 + +0.2 1,898,824 + -0.6 1,898,824 + +1.5 1,898,891 + A4249_RS09505 0.11 +0.2 1,898,891 + A4249_RS09505 0.11 -0.1 1,898,891 + A4249_RS09505 0.11 +0.1 1,898,891 + A4249_RS09505 0.11 -0.2 1,898,892 - A4249_RS09505 0.11 -0.0 1,898,892 - A4249_RS09505 0.11 -0.8 1,898,892 - A4249_RS09505 0.11 -1.8 1,898,892 - A4249_RS09505 0.11 +0.2 1,898,892 - A4249_RS09505 0.11 +0.7 1,899,066 - A4249_RS09505 0.40 +0.3 1,899,239 + A4249_RS09505 0.68 -0.2 1,899,240 - A4249_RS09505 0.68 -0.2 1,899,248 + A4249_RS09505 0.69 +0.5 1,899,249 - A4249_RS09505 0.70 +0.2 1,899,341 + A4249_RS09505 0.85 +0.8 1,899,341 + A4249_RS09505 0.85 +0.3 1,899,341 + A4249_RS09505 0.85 -0.0 1,899,342 - A4249_RS09505 0.85 -0.9 1,899,342 - A4249_RS09505 0.85 -0.2 1,899,432 - -0.5 1,899,571 + A4249_RS09510 0.15 +0.1 1,899,571 + A4249_RS09510 0.15 +0.5 1,899,572 - A4249_RS09510 0.15 +0.1 1,899,572 - A4249_RS09510 0.15 -0.5 1,899,582 + A4249_RS09510 0.16 +0.5 1,899,804 + A4249_RS09510 0.55 +0.7 1,899,804 + A4249_RS09510 0.55 +0.0 1,899,805 - A4249_RS09510 0.55 +0.5 1,899,805 - A4249_RS09510 0.55 +0.7 1,899,805 - A4249_RS09510 0.55 +0.7 1,899,805 - A4249_RS09510 0.55 +0.5 1,899,862 + A4249_RS09510 0.65 -0.5 1,899,942 + A4249_RS09510 0.78 -0.4 1,899,960 - A4249_RS09510 0.81 -0.5 1,899,966 + A4249_RS09510 0.82 -0.1 1,899,966 + A4249_RS09510 0.82 +0.1 1,899,966 + A4249_RS09510 0.82 +0.2 1,899,966 + A4249_RS09510 0.82 -0.3 1,899,967 - A4249_RS09510 0.83 +0.1 1,899,967 - A4249_RS09510 0.83 +0.2 1,899,967 - A4249_RS09510 0.83 -0.0 1,900,224 - A4249_RS09515 0.53 +1.0 1,900,305 - A4249_RS09515 0.82 -0.7 1,900,305 - A4249_RS09515 0.82 +1.0 1,900,305 - A4249_RS09515 0.82 -0.9 1,900,337 + +0.0 1,900,337 + -0.3 1,900,337 + +0.2 1,900,337 + -0.2 1,900,338 - +0.4 1,900,338 - -0.2 1,900,353 + +0.8 1,900,354 - -0.7 1,900,391 + -0.3 1,900,417 + -0.1 1,900,417 + -0.0 1,900,417 + -0.0 1,900,417 + +0.6 1,900,418 - +0.5 1,900,418 - +0.3
Or see this region's nucleotide sequence