Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08905

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS08890 and A4249_RS08895 overlap by 4 nucleotidesA4249_RS08895 and A4249_RS08900 are separated by 50 nucleotidesA4249_RS08900 and A4249_RS08905 are separated by 168 nucleotidesA4249_RS08905 and A4249_RS08910 are separated by 67 nucleotides A4249_RS08890: A4249_RS08890 - UbiX family flavin prenyltransferase, at 1,779,691 to 1,780,293 _RS08890 A4249_RS08895: A4249_RS08895 - TIGR02444 family protein, at 1,780,290 to 1,780,754 _RS08895 A4249_RS08900: A4249_RS08900 - DUF465 domain-containing protein, at 1,780,805 to 1,781,029 _RS08900 A4249_RS08905: A4249_RS08905 - M23 family metallopeptidase, at 1,781,198 to 1,781,839 _RS08905 A4249_RS08910: A4249_RS08910 - CocE/NonD family hydrolase, at 1,781,907 to 1,783,793 _RS08910 Position (kb) 1781 1782Strain fitness (log2 ratio) -2 -1 0 1at 1780.321 kb on - strandat 1780.321 kb on - strandat 1780.321 kb on - strandat 1780.767 kb on + strandat 1780.767 kb on + strandat 1780.767 kb on + strandat 1780.768 kb on - strandat 1780.768 kb on - strandat 1780.768 kb on - strandat 1780.768 kb on - strandat 1780.769 kb on + strandat 1780.769 kb on + strandat 1780.770 kb on - strandat 1781.082 kb on + strandat 1781.112 kb on + strandat 1781.112 kb on + strandat 1781.113 kb on - strandat 1781.113 kb on - strandat 1781.174 kb on + strandat 1781.174 kb on + strandat 1781.175 kb on - strandat 1781.175 kb on - strandat 1781.175 kb on - strandat 1781.583 kb on - strand, within A4249_RS08905at 1781.598 kb on - strand, within A4249_RS08905at 1781.864 kb on - strandat 1781.864 kb on - strandat 1781.864 kb on - strandat 1781.875 kb on + strandat 1781.875 kb on + strandat 1781.875 kb on + strandat 1781.875 kb on + strandat 1781.875 kb on + strandat 1781.875 kb on + strandat 1781.876 kb on - strandat 1781.877 kb on - strandat 1781.979 kb on + strandat 1781.979 kb on + strandat 1781.980 kb on - strandat 1781.980 kb on - strandat 1781.980 kb on - strandat 1781.988 kb on + strandat 1781.989 kb on - strandat 1781.989 kb on - strandat 1782.090 kb on + strandat 1782.090 kb on + strandat 1782.144 kb on + strand, within A4249_RS08910at 1782.144 kb on + strand, within A4249_RS08910at 1782.144 kb on + strand, within A4249_RS08910at 1782.144 kb on + strand, within A4249_RS08910at 1782.144 kb on + strand, within A4249_RS08910at 1782.144 kb on + strand, within A4249_RS08910at 1782.144 kb on + strand, within A4249_RS08910at 1782.144 kb on + strand, within A4249_RS08910at 1782.145 kb on - strand, within A4249_RS08910at 1782.147 kb on - strand, within A4249_RS08910at 1782.159 kb on + strand, within A4249_RS08910at 1782.159 kb on + strand, within A4249_RS08910at 1782.160 kb on - strand, within A4249_RS08910at 1782.160 kb on - strand, within A4249_RS08910at 1782.160 kb on - strand, within A4249_RS08910at 1782.207 kb on + strand, within A4249_RS08910at 1782.207 kb on + strand, within A4249_RS08910at 1782.207 kb on + strand, within A4249_RS08910at 1782.208 kb on - strand, within A4249_RS08910at 1782.208 kb on - strand, within A4249_RS08910at 1782.208 kb on - strand, within A4249_RS08910at 1782.240 kb on + strand, within A4249_RS08910at 1782.240 kb on + strand, within A4249_RS08910at 1782.241 kb on - strand, within A4249_RS08910at 1782.241 kb on - strand, within A4249_RS08910at 1782.258 kb on + strand, within A4249_RS08910at 1782.258 kb on + strand, within A4249_RS08910at 1782.291 kb on + strand, within A4249_RS08910at 1782.291 kb on + strand, within A4249_RS08910at 1782.291 kb on + strand, within A4249_RS08910at 1782.292 kb on - strand, within A4249_RS08910at 1782.292 kb on - strand, within A4249_RS08910at 1782.292 kb on - strand, within A4249_RS08910at 1782.484 kb on - strand, within A4249_RS08910at 1782.484 kb on - strand, within A4249_RS08910at 1782.526 kb on - strand, within A4249_RS08910at 1782.600 kb on + strand, within A4249_RS08910at 1782.600 kb on + strand, within A4249_RS08910at 1782.600 kb on + strand, within A4249_RS08910at 1782.601 kb on - strand, within A4249_RS08910at 1782.762 kb on + strand, within A4249_RS08910at 1782.762 kb on + strand, within A4249_RS08910at 1782.763 kb on - strand, within A4249_RS08910at 1782.763 kb on - strand, within A4249_RS08910at 1782.813 kb on + strand, within A4249_RS08910at 1782.813 kb on + strand, within A4249_RS08910at 1782.813 kb on + strand, within A4249_RS08910at 1782.813 kb on + strand, within A4249_RS08910at 1782.813 kb on + strand, within A4249_RS08910at 1782.813 kb on + strand, within A4249_RS08910at 1782.813 kb on + strand, within A4249_RS08910at 1782.813 kb on + strand, within A4249_RS08910at 1782.813 kb on + strand, within A4249_RS08910at 1782.813 kb on + strand, within A4249_RS08910at 1782.814 kb on - strand, within A4249_RS08910at 1782.814 kb on - strand, within A4249_RS08910at 1782.814 kb on - strand, within A4249_RS08910at 1782.814 kb on - strand, within A4249_RS08910at 1782.814 kb on - strand, within A4249_RS08910at 1782.814 kb on - strand, within A4249_RS08910

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
1,780,321 - +1.3
1,780,321 - -0.3
1,780,321 - -1.2
1,780,767 + -0.2
1,780,767 + +0.5
1,780,767 + -1.6
1,780,768 - -0.2
1,780,768 - +0.1
1,780,768 - -0.4
1,780,768 - +0.3
1,780,769 + +0.4
1,780,769 + -0.1
1,780,770 - -0.3
1,781,082 + -0.2
1,781,112 + -0.1
1,781,112 + +0.4
1,781,113 - +0.0
1,781,113 - +0.1
1,781,174 + -0.7
1,781,174 + +0.5
1,781,175 - -0.9
1,781,175 - -1.9
1,781,175 - -0.5
1,781,583 - A4249_RS08905 0.60 -0.2
1,781,598 - A4249_RS08905 0.62 +0.5
1,781,864 - +0.2
1,781,864 - +0.1
1,781,864 - -1.1
1,781,875 + -0.4
1,781,875 + +0.0
1,781,875 + -0.6
1,781,875 + -0.5
1,781,875 + -1.5
1,781,875 + -0.4
1,781,876 - -0.2
1,781,877 - -0.8
1,781,979 + -0.1
1,781,979 + +0.6
1,781,980 - -0.0
1,781,980 - -0.3
1,781,980 - -0.1
1,781,988 + -0.1
1,781,989 - -0.3
1,781,989 - +0.7
1,782,090 + -0.4
1,782,090 + -0.5
1,782,144 + A4249_RS08910 0.13 -2.0
1,782,144 + A4249_RS08910 0.13 -0.2
1,782,144 + A4249_RS08910 0.13 -0.6
1,782,144 + A4249_RS08910 0.13 -0.3
1,782,144 + A4249_RS08910 0.13 -1.1
1,782,144 + A4249_RS08910 0.13 +0.3
1,782,144 + A4249_RS08910 0.13 +0.5
1,782,144 + A4249_RS08910 0.13 -0.1
1,782,145 - A4249_RS08910 0.13 -0.9
1,782,147 - A4249_RS08910 0.13 -0.6
1,782,159 + A4249_RS08910 0.13 +1.2
1,782,159 + A4249_RS08910 0.13 +0.8
1,782,160 - A4249_RS08910 0.13 +0.2
1,782,160 - A4249_RS08910 0.13 -0.5
1,782,160 - A4249_RS08910 0.13 +0.4
1,782,207 + A4249_RS08910 0.16 +0.1
1,782,207 + A4249_RS08910 0.16 -0.3
1,782,207 + A4249_RS08910 0.16 +0.5
1,782,208 - A4249_RS08910 0.16 +0.1
1,782,208 - A4249_RS08910 0.16 +0.3
1,782,208 - A4249_RS08910 0.16 +0.3
1,782,240 + A4249_RS08910 0.18 -0.1
1,782,240 + A4249_RS08910 0.18 +0.2
1,782,241 - A4249_RS08910 0.18 +1.7
1,782,241 - A4249_RS08910 0.18 +0.6
1,782,258 + A4249_RS08910 0.19 +0.0
1,782,258 + A4249_RS08910 0.19 +0.3
1,782,291 + A4249_RS08910 0.20 -0.2
1,782,291 + A4249_RS08910 0.20 +0.7
1,782,291 + A4249_RS08910 0.20 -0.1
1,782,292 - A4249_RS08910 0.20 +0.2
1,782,292 - A4249_RS08910 0.20 -0.7
1,782,292 - A4249_RS08910 0.20 +0.2
1,782,484 - A4249_RS08910 0.31 -0.2
1,782,484 - A4249_RS08910 0.31 -0.5
1,782,526 - A4249_RS08910 0.33 -1.4
1,782,600 + A4249_RS08910 0.37 -0.1
1,782,600 + A4249_RS08910 0.37 -1.0
1,782,600 + A4249_RS08910 0.37 +0.1
1,782,601 - A4249_RS08910 0.37 -0.3
1,782,762 + A4249_RS08910 0.45 -1.0
1,782,762 + A4249_RS08910 0.45 -0.4
1,782,763 - A4249_RS08910 0.45 -0.5
1,782,763 - A4249_RS08910 0.45 +0.1
1,782,813 + A4249_RS08910 0.48 -0.6
1,782,813 + A4249_RS08910 0.48 +0.1
1,782,813 + A4249_RS08910 0.48 -1.3
1,782,813 + A4249_RS08910 0.48 -0.7
1,782,813 + A4249_RS08910 0.48 +0.0
1,782,813 + A4249_RS08910 0.48 +1.0
1,782,813 + A4249_RS08910 0.48 -0.8
1,782,813 + A4249_RS08910 0.48 +0.7
1,782,813 + A4249_RS08910 0.48 -0.6
1,782,813 + A4249_RS08910 0.48 -0.1
1,782,814 - A4249_RS08910 0.48 +0.5
1,782,814 - A4249_RS08910 0.48 +0.1
1,782,814 - A4249_RS08910 0.48 +0.2
1,782,814 - A4249_RS08910 0.48 +0.9
1,782,814 - A4249_RS08910 0.48 -0.5
1,782,814 - A4249_RS08910 0.48 -0.1

Or see this region's nucleotide sequence