Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08815

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08805 and A4249_RS08810 are separated by 62 nucleotidesA4249_RS08810 and A4249_RS08815 are separated by 131 nucleotidesA4249_RS08815 and A4249_RS08820 are separated by 141 nucleotidesA4249_RS08820 and A4249_RS08825 are separated by 69 nucleotides A4249_RS08805: A4249_RS08805 - HAMP domain-containing sensor histidine kinase, at 1,764,841 to 1,766,532 _RS08805 A4249_RS08810: A4249_RS08810 - thiamine phosphate synthase, at 1,766,595 to 1,767,248 _RS08810 A4249_RS08815: A4249_RS08815 - (2Fe-2S)-binding protein, at 1,767,380 to 1,767,565 _RS08815 A4249_RS08820: A4249_RS08820 - bacterioferritin, at 1,767,707 to 1,768,207 _RS08820 A4249_RS08825: A4249_RS08825 - tryptophan-rich sensory protein, at 1,768,277 to 1,768,837 _RS08825 Position (kb) 1767 1768Strain fitness (log2 ratio) -3 -2 -1 0 1at 1766.563 kb on + strandat 1766.563 kb on + strandat 1766.563 kb on + strandat 1766.580 kb on + strandat 1766.580 kb on + strandat 1766.580 kb on + strandat 1766.580 kb on + strandat 1766.580 kb on + strandat 1766.580 kb on + strandat 1766.581 kb on - strandat 1766.581 kb on - strandat 1766.581 kb on - strandat 1766.581 kb on - strandat 1766.581 kb on - strandat 1766.581 kb on - strandat 1766.581 kb on - strandat 1766.581 kb on - strandat 1766.584 kb on - strandat 1766.584 kb on - strandat 1767.289 kb on + strandat 1767.289 kb on + strandat 1767.289 kb on + strandat 1767.290 kb on - strandat 1767.339 kb on + strandat 1767.340 kb on - strandat 1767.340 kb on - strandat 1767.341 kb on + strandat 1767.342 kb on - strandat 1767.383 kb on + strandat 1767.383 kb on + strandat 1767.383 kb on + strandat 1767.384 kb on - strandat 1767.384 kb on - strandat 1767.384 kb on - strandat 1767.384 kb on - strandat 1767.384 kb on - strandat 1767.397 kb on + strandat 1767.397 kb on + strandat 1767.398 kb on - strandat 1767.563 kb on + strandat 1767.563 kb on + strandat 1767.564 kb on - strandat 1767.564 kb on - strandat 1767.643 kb on + strandat 1767.644 kb on - strandat 1767.644 kb on - strandat 1767.644 kb on - strandat 1767.651 kb on + strandat 1767.780 kb on - strand, within A4249_RS08820at 1767.780 kb on - strand, within A4249_RS08820at 1767.839 kb on + strand, within A4249_RS08820at 1767.839 kb on + strand, within A4249_RS08820at 1767.839 kb on + strand, within A4249_RS08820at 1767.839 kb on + strand, within A4249_RS08820at 1767.839 kb on + strand, within A4249_RS08820at 1767.839 kb on + strand, within A4249_RS08820at 1767.839 kb on + strand, within A4249_RS08820at 1767.840 kb on - strand, within A4249_RS08820at 1767.840 kb on - strand, within A4249_RS08820at 1768.046 kb on + strand, within A4249_RS08820at 1768.046 kb on + strand, within A4249_RS08820at 1768.047 kb on - strand, within A4249_RS08820at 1768.047 kb on - strand, within A4249_RS08820at 1768.151 kb on + strand, within A4249_RS08820at 1768.152 kb on - strand, within A4249_RS08820at 1768.152 kb on - strand, within A4249_RS08820at 1768.152 kb on - strand, within A4249_RS08820at 1768.205 kb on + strandat 1768.205 kb on + strandat 1768.205 kb on + strandat 1768.206 kb on - strandat 1768.206 kb on - strandat 1768.206 kb on - strandat 1768.206 kb on - strandat 1768.206 kb on - strandat 1768.206 kb on - strandat 1768.474 kb on + strand, within A4249_RS08825at 1768.474 kb on + strand, within A4249_RS08825at 1768.474 kb on + strand, within A4249_RS08825at 1768.474 kb on + strand, within A4249_RS08825at 1768.475 kb on - strand, within A4249_RS08825at 1768.549 kb on - strand, within A4249_RS08825

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,766,563 + -0.3
1,766,563 + -0.3
1,766,563 + -0.0
1,766,580 + -0.2
1,766,580 + +0.6
1,766,580 + -0.4
1,766,580 + -0.2
1,766,580 + -1.5
1,766,580 + -0.7
1,766,581 - -0.6
1,766,581 - +0.1
1,766,581 - -0.5
1,766,581 - -0.6
1,766,581 - +0.1
1,766,581 - +0.2
1,766,581 - -0.8
1,766,581 - -0.2
1,766,584 - +0.9
1,766,584 - -1.0
1,767,289 + +0.1
1,767,289 + -0.0
1,767,289 + +0.3
1,767,290 - +0.4
1,767,339 + -0.9
1,767,340 - -0.4
1,767,340 - -0.2
1,767,341 + -0.8
1,767,342 - -0.4
1,767,383 + -3.1
1,767,383 + -1.0
1,767,383 + +0.4
1,767,384 - +0.0
1,767,384 - -2.1
1,767,384 - +0.4
1,767,384 - -0.3
1,767,384 - +0.2
1,767,397 + +0.7
1,767,397 + +0.2
1,767,398 - -0.5
1,767,563 + -0.8
1,767,563 + -0.4
1,767,564 - -0.5
1,767,564 - +0.5
1,767,643 + -0.5
1,767,644 - -0.2
1,767,644 - +0.7
1,767,644 - +0.8
1,767,651 + -1.3
1,767,780 - A4249_RS08820 0.15 -0.4
1,767,780 - A4249_RS08820 0.15 -0.0
1,767,839 + A4249_RS08820 0.26 -0.5
1,767,839 + A4249_RS08820 0.26 -0.5
1,767,839 + A4249_RS08820 0.26 -1.4
1,767,839 + A4249_RS08820 0.26 -1.1
1,767,839 + A4249_RS08820 0.26 +0.9
1,767,839 + A4249_RS08820 0.26 +0.0
1,767,839 + A4249_RS08820 0.26 +0.8
1,767,840 - A4249_RS08820 0.27 +0.3
1,767,840 - A4249_RS08820 0.27 +0.3
1,768,046 + A4249_RS08820 0.68 -0.8
1,768,046 + A4249_RS08820 0.68 +0.1
1,768,047 - A4249_RS08820 0.68 -1.1
1,768,047 - A4249_RS08820 0.68 +0.0
1,768,151 + A4249_RS08820 0.89 -0.3
1,768,152 - A4249_RS08820 0.89 -0.1
1,768,152 - A4249_RS08820 0.89 -1.9
1,768,152 - A4249_RS08820 0.89 -1.0
1,768,205 + -0.4
1,768,205 + -0.2
1,768,205 + +0.2
1,768,206 - +0.6
1,768,206 - +0.3
1,768,206 - +0.3
1,768,206 - +0.3
1,768,206 - +0.6
1,768,206 - +0.2
1,768,474 + A4249_RS08825 0.35 +0.1
1,768,474 + A4249_RS08825 0.35 -0.1
1,768,474 + A4249_RS08825 0.35 -0.8
1,768,474 + A4249_RS08825 0.35 +0.0
1,768,475 - A4249_RS08825 0.35 +0.1
1,768,549 - A4249_RS08825 0.48 -1.3

Or see this region's nucleotide sequence