Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08580

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08575 and A4249_RS08580 are separated by 3 nucleotidesA4249_RS08580 and A4249_RS08585 are separated by 94 nucleotidesA4249_RS08585 and A4249_RS08590 overlap by 4 nucleotides A4249_RS08575: A4249_RS08575 - excinuclease ABC subunit UvrA, at 1,718,010 to 1,720,955 _RS08575 A4249_RS08580: A4249_RS08580 - hypothetical protein, at 1,720,959 to 1,721,861 _RS08580 A4249_RS08585: A4249_RS08585 - ABC-type transport auxiliary lipoprotein family protein, at 1,721,956 to 1,722,606 _RS08585 A4249_RS08590: A4249_RS08590 - MlaD family protein, at 1,722,603 to 1,723,541 _RS08590 Position (kb) 1720 1721 1722Strain fitness (log2 ratio) -2 -1 0 1 2at 1720.005 kb on + strand, within A4249_RS08575at 1720.005 kb on + strand, within A4249_RS08575at 1720.005 kb on + strand, within A4249_RS08575at 1720.005 kb on + strand, within A4249_RS08575at 1720.006 kb on - strand, within A4249_RS08575at 1720.006 kb on - strand, within A4249_RS08575at 1720.006 kb on - strand, within A4249_RS08575at 1720.006 kb on - strand, within A4249_RS08575at 1720.006 kb on - strand, within A4249_RS08575at 1720.006 kb on - strand, within A4249_RS08575at 1720.006 kb on - strand, within A4249_RS08575at 1720.006 kb on - strand, within A4249_RS08575at 1720.006 kb on - strand, within A4249_RS08575at 1720.149 kb on + strand, within A4249_RS08575at 1720.149 kb on + strand, within A4249_RS08575at 1720.149 kb on + strand, within A4249_RS08575at 1720.149 kb on + strand, within A4249_RS08575at 1720.149 kb on + strand, within A4249_RS08575at 1720.150 kb on - strand, within A4249_RS08575at 1720.150 kb on - strand, within A4249_RS08575at 1720.150 kb on - strand, within A4249_RS08575at 1720.150 kb on - strand, within A4249_RS08575at 1720.182 kb on + strand, within A4249_RS08575at 1720.182 kb on + strand, within A4249_RS08575at 1720.182 kb on + strand, within A4249_RS08575at 1720.216 kb on - strand, within A4249_RS08575at 1720.317 kb on + strand, within A4249_RS08575at 1720.317 kb on + strand, within A4249_RS08575at 1720.317 kb on + strand, within A4249_RS08575at 1720.317 kb on + strand, within A4249_RS08575at 1720.317 kb on + strand, within A4249_RS08575at 1720.318 kb on - strand, within A4249_RS08575at 1720.318 kb on - strand, within A4249_RS08575at 1720.318 kb on - strand, within A4249_RS08575at 1720.350 kb on + strand, within A4249_RS08575at 1720.350 kb on + strand, within A4249_RS08575at 1720.350 kb on + strand, within A4249_RS08575at 1720.351 kb on - strand, within A4249_RS08575at 1720.351 kb on - strand, within A4249_RS08575at 1720.351 kb on - strand, within A4249_RS08575at 1720.497 kb on + strand, within A4249_RS08575at 1720.497 kb on + strand, within A4249_RS08575at 1720.497 kb on + strand, within A4249_RS08575at 1720.498 kb on - strand, within A4249_RS08575at 1720.498 kb on - strand, within A4249_RS08575at 1720.599 kb on + strand, within A4249_RS08575at 1720.599 kb on + strand, within A4249_RS08575at 1720.599 kb on + strand, within A4249_RS08575at 1720.599 kb on + strand, within A4249_RS08575at 1720.599 kb on + strand, within A4249_RS08575at 1720.599 kb on + strand, within A4249_RS08575at 1720.599 kb on + strand, within A4249_RS08575at 1720.599 kb on + strand, within A4249_RS08575at 1720.599 kb on + strand, within A4249_RS08575at 1720.599 kb on + strand, within A4249_RS08575at 1720.599 kb on + strand, within A4249_RS08575at 1720.599 kb on + strand, within A4249_RS08575at 1720.600 kb on - strand, within A4249_RS08575at 1720.600 kb on - strand, within A4249_RS08575at 1720.600 kb on - strand, within A4249_RS08575at 1720.600 kb on - strand, within A4249_RS08575at 1720.600 kb on - strand, within A4249_RS08575at 1720.600 kb on - strand, within A4249_RS08575at 1720.600 kb on - strand, within A4249_RS08575at 1720.600 kb on - strand, within A4249_RS08575at 1720.641 kb on - strand, within A4249_RS08575at 1720.737 kb on + strandat 1720.737 kb on + strandat 1720.738 kb on - strandat 1720.738 kb on - strandat 1720.738 kb on - strandat 1720.842 kb on + strandat 1720.842 kb on + strandat 1720.842 kb on + strandat 1720.842 kb on + strandat 1720.842 kb on + strandat 1720.843 kb on - strandat 1720.843 kb on - strandat 1720.843 kb on - strandat 1721.023 kb on + strandat 1721.023 kb on + strandat 1721.023 kb on + strandat 1721.023 kb on + strandat 1721.023 kb on + strandat 1721.024 kb on - strandat 1721.024 kb on - strandat 1721.024 kb on - strandat 1721.024 kb on - strandat 1721.024 kb on - strandat 1721.024 kb on - strandat 1721.536 kb on + strand, within A4249_RS08580at 1721.537 kb on - strand, within A4249_RS08580at 1721.537 kb on - strand, within A4249_RS08580at 1721.537 kb on - strand, within A4249_RS08580at 1721.537 kb on - strand, within A4249_RS08580at 1721.644 kb on + strand, within A4249_RS08580at 1721.644 kb on + strand, within A4249_RS08580at 1721.644 kb on + strand, within A4249_RS08580at 1721.644 kb on + strand, within A4249_RS08580at 1721.645 kb on - strand, within A4249_RS08580at 1721.645 kb on - strand, within A4249_RS08580at 1721.645 kb on - strand, within A4249_RS08580at 1721.645 kb on - strand, within A4249_RS08580at 1721.645 kb on - strand, within A4249_RS08580at 1721.761 kb on + strand, within A4249_RS08580at 1721.761 kb on + strand, within A4249_RS08580at 1721.761 kb on + strand, within A4249_RS08580at 1721.761 kb on + strand, within A4249_RS08580at 1721.761 kb on + strand, within A4249_RS08580at 1721.761 kb on + strand, within A4249_RS08580at 1721.762 kb on - strand, within A4249_RS08580at 1721.762 kb on - strand, within A4249_RS08580at 1721.762 kb on - strand, within A4249_RS08580at 1721.762 kb on - strand, within A4249_RS08580at 1721.762 kb on - strand, within A4249_RS08580at 1721.774 kb on - strandat 1721.895 kb on - strandat 1721.901 kb on + strandat 1721.901 kb on + strandat 1721.901 kb on + strandat 1721.901 kb on + strandat 1721.911 kb on + strandat 1721.911 kb on + strandat 1721.911 kb on + strandat 1721.911 kb on + strandat 1721.911 kb on + strandat 1721.912 kb on - strandat 1721.912 kb on - strandat 1721.912 kb on - strandat 1721.912 kb on - strandat 1721.912 kb on - strandat 1721.912 kb on - strandat 1722.200 kb on + strand, within A4249_RS08585at 1722.365 kb on + strand, within A4249_RS08585at 1722.365 kb on + strand, within A4249_RS08585at 1722.365 kb on + strand, within A4249_RS08585at 1722.366 kb on - strand, within A4249_RS08585at 1722.366 kb on - strand, within A4249_RS08585at 1722.366 kb on - strand, within A4249_RS08585at 1722.366 kb on - strand, within A4249_RS08585at 1722.377 kb on - strand, within A4249_RS08585at 1722.507 kb on - strand, within A4249_RS08585at 1722.644 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,720,005 + A4249_RS08575 0.68 -2.0
1,720,005 + A4249_RS08575 0.68 -0.0
1,720,005 + A4249_RS08575 0.68 -1.0
1,720,005 + A4249_RS08575 0.68 +0.2
1,720,006 - A4249_RS08575 0.68 -0.4
1,720,006 - A4249_RS08575 0.68 -0.8
1,720,006 - A4249_RS08575 0.68 -0.2
1,720,006 - A4249_RS08575 0.68 -1.1
1,720,006 - A4249_RS08575 0.68 -0.5
1,720,006 - A4249_RS08575 0.68 -0.3
1,720,006 - A4249_RS08575 0.68 -0.4
1,720,006 - A4249_RS08575 0.68 +1.2
1,720,006 - A4249_RS08575 0.68 +0.4
1,720,149 + A4249_RS08575 0.73 -0.4
1,720,149 + A4249_RS08575 0.73 -0.8
1,720,149 + A4249_RS08575 0.73 -0.2
1,720,149 + A4249_RS08575 0.73 -0.0
1,720,149 + A4249_RS08575 0.73 -0.2
1,720,150 - A4249_RS08575 0.73 +0.4
1,720,150 - A4249_RS08575 0.73 -0.6
1,720,150 - A4249_RS08575 0.73 -0.5
1,720,150 - A4249_RS08575 0.73 -0.1
1,720,182 + A4249_RS08575 0.74 -1.7
1,720,182 + A4249_RS08575 0.74 -0.8
1,720,182 + A4249_RS08575 0.74 +1.0
1,720,216 - A4249_RS08575 0.75 -1.3
1,720,317 + A4249_RS08575 0.78 +0.2
1,720,317 + A4249_RS08575 0.78 +1.4
1,720,317 + A4249_RS08575 0.78 -0.4
1,720,317 + A4249_RS08575 0.78 +0.1
1,720,317 + A4249_RS08575 0.78 +1.0
1,720,318 - A4249_RS08575 0.78 +0.8
1,720,318 - A4249_RS08575 0.78 +0.5
1,720,318 - A4249_RS08575 0.78 +1.2
1,720,350 + A4249_RS08575 0.79 +0.5
1,720,350 + A4249_RS08575 0.79 -0.6
1,720,350 + A4249_RS08575 0.79 +0.4
1,720,351 - A4249_RS08575 0.79 -0.4
1,720,351 - A4249_RS08575 0.79 +0.2
1,720,351 - A4249_RS08575 0.79 -1.4
1,720,497 + A4249_RS08575 0.84 -2.0
1,720,497 + A4249_RS08575 0.84 +0.1
1,720,497 + A4249_RS08575 0.84 +0.1
1,720,498 - A4249_RS08575 0.84 -1.2
1,720,498 - A4249_RS08575 0.84 -1.0
1,720,599 + A4249_RS08575 0.88 +0.4
1,720,599 + A4249_RS08575 0.88 +0.3
1,720,599 + A4249_RS08575 0.88 +0.7
1,720,599 + A4249_RS08575 0.88 +1.6
1,720,599 + A4249_RS08575 0.88 -1.4
1,720,599 + A4249_RS08575 0.88 +0.2
1,720,599 + A4249_RS08575 0.88 -2.1
1,720,599 + A4249_RS08575 0.88 +1.4
1,720,599 + A4249_RS08575 0.88 +0.5
1,720,599 + A4249_RS08575 0.88 -0.7
1,720,599 + A4249_RS08575 0.88 +1.6
1,720,599 + A4249_RS08575 0.88 -0.0
1,720,600 - A4249_RS08575 0.88 -2.2
1,720,600 - A4249_RS08575 0.88 +0.3
1,720,600 - A4249_RS08575 0.88 -0.6
1,720,600 - A4249_RS08575 0.88 +0.6
1,720,600 - A4249_RS08575 0.88 -0.1
1,720,600 - A4249_RS08575 0.88 -0.3
1,720,600 - A4249_RS08575 0.88 +0.1
1,720,600 - A4249_RS08575 0.88 +0.7
1,720,641 - A4249_RS08575 0.89 -0.9
1,720,737 + -1.1
1,720,737 + +0.7
1,720,738 - -1.7
1,720,738 - -0.9
1,720,738 - -0.2
1,720,842 + -2.3
1,720,842 + -1.5
1,720,842 + -0.3
1,720,842 + +0.4
1,720,842 + +0.8
1,720,843 - -0.1
1,720,843 - +0.1
1,720,843 - -0.2
1,721,023 + -0.2
1,721,023 + +1.0
1,721,023 + -0.2
1,721,023 + +0.4
1,721,023 + +0.2
1,721,024 - -0.4
1,721,024 - -0.2
1,721,024 - -0.3
1,721,024 - +0.0
1,721,024 - +0.5
1,721,024 - +0.6
1,721,536 + A4249_RS08580 0.64 +0.7
1,721,537 - A4249_RS08580 0.64 +2.3
1,721,537 - A4249_RS08580 0.64 +0.2
1,721,537 - A4249_RS08580 0.64 +0.8
1,721,537 - A4249_RS08580 0.64 -0.4
1,721,644 + A4249_RS08580 0.76 -0.5
1,721,644 + A4249_RS08580 0.76 +0.2
1,721,644 + A4249_RS08580 0.76 -0.3
1,721,644 + A4249_RS08580 0.76 +0.8
1,721,645 - A4249_RS08580 0.76 -0.0
1,721,645 - A4249_RS08580 0.76 -0.2
1,721,645 - A4249_RS08580 0.76 +0.4
1,721,645 - A4249_RS08580 0.76 -0.5
1,721,645 - A4249_RS08580 0.76 +0.3
1,721,761 + A4249_RS08580 0.89 -1.5
1,721,761 + A4249_RS08580 0.89 -0.3
1,721,761 + A4249_RS08580 0.89 +0.3
1,721,761 + A4249_RS08580 0.89 -0.7
1,721,761 + A4249_RS08580 0.89 +0.1
1,721,761 + A4249_RS08580 0.89 -0.5
1,721,762 - A4249_RS08580 0.89 +0.9
1,721,762 - A4249_RS08580 0.89 -0.6
1,721,762 - A4249_RS08580 0.89 +0.2
1,721,762 - A4249_RS08580 0.89 -0.3
1,721,762 - A4249_RS08580 0.89 +1.5
1,721,774 - -1.0
1,721,895 - +0.3
1,721,901 + +1.1
1,721,901 + +0.3
1,721,901 + -0.3
1,721,901 + -0.1
1,721,911 + +0.5
1,721,911 + +0.9
1,721,911 + -0.6
1,721,911 + -1.0
1,721,911 + -0.9
1,721,912 - +0.2
1,721,912 - +0.1
1,721,912 - +0.7
1,721,912 - +0.7
1,721,912 - +0.1
1,721,912 - +0.4
1,722,200 + A4249_RS08585 0.37 -0.5
1,722,365 + A4249_RS08585 0.63 +2.4
1,722,365 + A4249_RS08585 0.63 -0.2
1,722,365 + A4249_RS08585 0.63 +0.5
1,722,366 - A4249_RS08585 0.63 +0.3
1,722,366 - A4249_RS08585 0.63 +0.6
1,722,366 - A4249_RS08585 0.63 -0.6
1,722,366 - A4249_RS08585 0.63 +0.3
1,722,377 - A4249_RS08585 0.65 -0.3
1,722,507 - A4249_RS08585 0.85 +0.8
1,722,644 + -0.5

Or see this region's nucleotide sequence