Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08440

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08430 and A4249_RS08440 are separated by 378 nucleotidesA4249_RS08440 and A4249_RS08445 are separated by 21 nucleotides A4249_RS08430: A4249_RS08430 - glycine zipper 2TM domain-containing protein, at 1,691,924 to 1,692,586 _RS08430 A4249_RS08440: A4249_RS08440 - TlyA family RNA methyltransferase, at 1,692,965 to 1,693,696 _RS08440 A4249_RS08445: A4249_RS08445 - valine--tRNA ligase, at 1,693,718 to 1,696,516 _RS08445 Position (kb) 1692 1693 1694Strain fitness (log2 ratio) -2 -1 0 1at 1692.026 kb on + strand, within A4249_RS08430at 1692.028 kb on + strand, within A4249_RS08430at 1692.028 kb on + strand, within A4249_RS08430at 1692.028 kb on + strand, within A4249_RS08430at 1692.038 kb on + strand, within A4249_RS08430at 1692.039 kb on - strand, within A4249_RS08430at 1692.039 kb on - strand, within A4249_RS08430at 1692.039 kb on - strand, within A4249_RS08430at 1692.039 kb on - strand, within A4249_RS08430at 1692.039 kb on - strand, within A4249_RS08430at 1692.065 kb on + strand, within A4249_RS08430at 1692.065 kb on + strand, within A4249_RS08430at 1692.065 kb on + strand, within A4249_RS08430at 1692.065 kb on + strand, within A4249_RS08430at 1692.066 kb on - strand, within A4249_RS08430at 1692.066 kb on - strand, within A4249_RS08430at 1692.066 kb on - strand, within A4249_RS08430at 1692.066 kb on - strand, within A4249_RS08430at 1692.066 kb on - strand, within A4249_RS08430at 1692.066 kb on - strand, within A4249_RS08430at 1692.066 kb on - strand, within A4249_RS08430at 1692.066 kb on - strand, within A4249_RS08430at 1692.066 kb on - strand, within A4249_RS08430at 1692.066 kb on - strand, within A4249_RS08430at 1692.071 kb on + strand, within A4249_RS08430at 1692.071 kb on + strand, within A4249_RS08430at 1692.071 kb on + strand, within A4249_RS08430at 1692.071 kb on + strand, within A4249_RS08430at 1692.072 kb on - strand, within A4249_RS08430at 1692.072 kb on - strand, within A4249_RS08430at 1692.072 kb on - strand, within A4249_RS08430at 1692.072 kb on - strand, within A4249_RS08430at 1692.072 kb on - strand, within A4249_RS08430at 1692.087 kb on - strand, within A4249_RS08430at 1692.087 kb on - strand, within A4249_RS08430at 1692.089 kb on + strand, within A4249_RS08430at 1692.089 kb on + strand, within A4249_RS08430at 1692.090 kb on - strand, within A4249_RS08430at 1692.090 kb on - strand, within A4249_RS08430at 1692.090 kb on - strand, within A4249_RS08430at 1692.281 kb on + strand, within A4249_RS08430at 1692.281 kb on + strand, within A4249_RS08430at 1692.282 kb on - strand, within A4249_RS08430at 1692.282 kb on - strand, within A4249_RS08430at 1692.293 kb on + strand, within A4249_RS08430at 1692.293 kb on + strand, within A4249_RS08430at 1692.293 kb on + strand, within A4249_RS08430at 1692.293 kb on + strand, within A4249_RS08430at 1692.294 kb on - strand, within A4249_RS08430at 1692.294 kb on - strand, within A4249_RS08430at 1692.294 kb on - strand, within A4249_RS08430at 1692.294 kb on - strand, within A4249_RS08430at 1692.309 kb on - strand, within A4249_RS08430at 1692.311 kb on + strand, within A4249_RS08430at 1692.311 kb on + strand, within A4249_RS08430at 1692.312 kb on - strand, within A4249_RS08430at 1692.323 kb on + strand, within A4249_RS08430at 1692.324 kb on - strand, within A4249_RS08430at 1692.324 kb on - strand, within A4249_RS08430at 1692.324 kb on - strand, within A4249_RS08430at 1692.325 kb on + strand, within A4249_RS08430at 1692.325 kb on + strand, within A4249_RS08430at 1692.325 kb on + strand, within A4249_RS08430at 1692.325 kb on + strand, within A4249_RS08430at 1692.326 kb on - strand, within A4249_RS08430at 1692.338 kb on + strand, within A4249_RS08430at 1692.338 kb on + strand, within A4249_RS08430at 1692.338 kb on + strand, within A4249_RS08430at 1692.339 kb on - strand, within A4249_RS08430at 1692.344 kb on + strand, within A4249_RS08430at 1692.344 kb on + strand, within A4249_RS08430at 1692.345 kb on - strand, within A4249_RS08430at 1692.347 kb on + strand, within A4249_RS08430at 1692.348 kb on - strand, within A4249_RS08430at 1692.359 kb on + strand, within A4249_RS08430at 1692.360 kb on - strand, within A4249_RS08430at 1692.360 kb on - strand, within A4249_RS08430at 1692.360 kb on - strand, within A4249_RS08430at 1692.392 kb on + strand, within A4249_RS08430at 1692.392 kb on + strand, within A4249_RS08430at 1692.392 kb on + strand, within A4249_RS08430at 1692.392 kb on + strand, within A4249_RS08430at 1692.392 kb on + strand, within A4249_RS08430at 1692.393 kb on - strand, within A4249_RS08430at 1692.393 kb on - strand, within A4249_RS08430at 1692.393 kb on - strand, within A4249_RS08430at 1692.393 kb on - strand, within A4249_RS08430at 1692.410 kb on + strand, within A4249_RS08430at 1692.410 kb on + strand, within A4249_RS08430at 1692.410 kb on + strand, within A4249_RS08430at 1692.410 kb on + strand, within A4249_RS08430at 1692.411 kb on - strand, within A4249_RS08430at 1692.411 kb on - strand, within A4249_RS08430at 1692.411 kb on - strand, within A4249_RS08430at 1692.411 kb on - strand, within A4249_RS08430at 1692.416 kb on + strand, within A4249_RS08430at 1692.416 kb on + strand, within A4249_RS08430at 1692.416 kb on + strand, within A4249_RS08430at 1692.417 kb on - strand, within A4249_RS08430at 1692.417 kb on - strand, within A4249_RS08430at 1692.417 kb on - strand, within A4249_RS08430at 1692.417 kb on - strand, within A4249_RS08430at 1692.417 kb on - strand, within A4249_RS08430at 1692.435 kb on - strand, within A4249_RS08430at 1692.536 kb on + strandat 1692.536 kb on + strandat 1692.584 kb on + strandat 1692.635 kb on + strandat 1692.635 kb on + strandat 1692.635 kb on + strandat 1692.635 kb on + strandat 1692.635 kb on + strandat 1692.635 kb on + strandat 1692.636 kb on - strandat 1692.636 kb on - strandat 1692.684 kb on + strandat 1692.684 kb on + strandat 1692.684 kb on + strandat 1692.684 kb on + strandat 1692.684 kb on + strandat 1692.684 kb on + strandat 1692.684 kb on + strandat 1692.684 kb on + strandat 1692.684 kb on + strandat 1692.684 kb on + strandat 1692.684 kb on + strandat 1692.684 kb on + strandat 1692.684 kb on + strandat 1692.721 kb on - strandat 1692.936 kb on + strandat 1692.936 kb on + strandat 1692.936 kb on + strandat 1692.966 kb on + strandat 1693.482 kb on - strand, within A4249_RS08440

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,692,026 + A4249_RS08430 0.15 +0.3
1,692,028 + A4249_RS08430 0.16 +0.8
1,692,028 + A4249_RS08430 0.16 +0.1
1,692,028 + A4249_RS08430 0.16 -1.9
1,692,038 + A4249_RS08430 0.17 -0.0
1,692,039 - A4249_RS08430 0.17 -0.4
1,692,039 - A4249_RS08430 0.17 +0.8
1,692,039 - A4249_RS08430 0.17 -1.1
1,692,039 - A4249_RS08430 0.17 +0.6
1,692,039 - A4249_RS08430 0.17 -0.0
1,692,065 + A4249_RS08430 0.21 -0.7
1,692,065 + A4249_RS08430 0.21 -0.8
1,692,065 + A4249_RS08430 0.21 -0.5
1,692,065 + A4249_RS08430 0.21 -0.4
1,692,066 - A4249_RS08430 0.21 +0.6
1,692,066 - A4249_RS08430 0.21 -0.5
1,692,066 - A4249_RS08430 0.21 -0.2
1,692,066 - A4249_RS08430 0.21 +0.4
1,692,066 - A4249_RS08430 0.21 +0.1
1,692,066 - A4249_RS08430 0.21 +0.5
1,692,066 - A4249_RS08430 0.21 -0.5
1,692,066 - A4249_RS08430 0.21 -0.3
1,692,066 - A4249_RS08430 0.21 +0.8
1,692,066 - A4249_RS08430 0.21 +0.6
1,692,071 + A4249_RS08430 0.22 -1.0
1,692,071 + A4249_RS08430 0.22 -0.2
1,692,071 + A4249_RS08430 0.22 +0.4
1,692,071 + A4249_RS08430 0.22 +0.1
1,692,072 - A4249_RS08430 0.22 +0.0
1,692,072 - A4249_RS08430 0.22 -0.5
1,692,072 - A4249_RS08430 0.22 -0.1
1,692,072 - A4249_RS08430 0.22 +0.4
1,692,072 - A4249_RS08430 0.22 +0.2
1,692,087 - A4249_RS08430 0.25 +0.4
1,692,087 - A4249_RS08430 0.25 -0.2
1,692,089 + A4249_RS08430 0.25 -0.5
1,692,089 + A4249_RS08430 0.25 -0.1
1,692,090 - A4249_RS08430 0.25 +0.1
1,692,090 - A4249_RS08430 0.25 -0.4
1,692,090 - A4249_RS08430 0.25 +0.4
1,692,281 + A4249_RS08430 0.54 -0.3
1,692,281 + A4249_RS08430 0.54 +0.6
1,692,282 - A4249_RS08430 0.54 -0.9
1,692,282 - A4249_RS08430 0.54 -0.5
1,692,293 + A4249_RS08430 0.56 -0.2
1,692,293 + A4249_RS08430 0.56 -0.4
1,692,293 + A4249_RS08430 0.56 +0.1
1,692,293 + A4249_RS08430 0.56 +0.2
1,692,294 - A4249_RS08430 0.56 +0.1
1,692,294 - A4249_RS08430 0.56 -0.8
1,692,294 - A4249_RS08430 0.56 -0.1
1,692,294 - A4249_RS08430 0.56 -0.3
1,692,309 - A4249_RS08430 0.58 -0.1
1,692,311 + A4249_RS08430 0.58 -0.0
1,692,311 + A4249_RS08430 0.58 -0.6
1,692,312 - A4249_RS08430 0.59 -0.8
1,692,323 + A4249_RS08430 0.60 -0.9
1,692,324 - A4249_RS08430 0.60 -1.2
1,692,324 - A4249_RS08430 0.60 -0.4
1,692,324 - A4249_RS08430 0.60 -1.5
1,692,325 + A4249_RS08430 0.60 -0.7
1,692,325 + A4249_RS08430 0.60 -0.7
1,692,325 + A4249_RS08430 0.60 -0.8
1,692,325 + A4249_RS08430 0.60 -0.2
1,692,326 - A4249_RS08430 0.61 +0.1
1,692,338 + A4249_RS08430 0.62 -0.2
1,692,338 + A4249_RS08430 0.62 +0.0
1,692,338 + A4249_RS08430 0.62 +1.0
1,692,339 - A4249_RS08430 0.63 -0.9
1,692,344 + A4249_RS08430 0.63 +0.4
1,692,344 + A4249_RS08430 0.63 +0.5
1,692,345 - A4249_RS08430 0.63 -0.2
1,692,347 + A4249_RS08430 0.64 -0.3
1,692,348 - A4249_RS08430 0.64 -1.1
1,692,359 + A4249_RS08430 0.66 -0.3
1,692,360 - A4249_RS08430 0.66 -0.7
1,692,360 - A4249_RS08430 0.66 +0.0
1,692,360 - A4249_RS08430 0.66 -0.2
1,692,392 + A4249_RS08430 0.71 +0.4
1,692,392 + A4249_RS08430 0.71 -0.3
1,692,392 + A4249_RS08430 0.71 +0.1
1,692,392 + A4249_RS08430 0.71 +0.3
1,692,392 + A4249_RS08430 0.71 +0.6
1,692,393 - A4249_RS08430 0.71 -0.1
1,692,393 - A4249_RS08430 0.71 -0.3
1,692,393 - A4249_RS08430 0.71 -0.5
1,692,393 - A4249_RS08430 0.71 -0.3
1,692,410 + A4249_RS08430 0.73 -0.7
1,692,410 + A4249_RS08430 0.73 -0.5
1,692,410 + A4249_RS08430 0.73 -0.3
1,692,410 + A4249_RS08430 0.73 -0.7
1,692,411 - A4249_RS08430 0.73 -0.3
1,692,411 - A4249_RS08430 0.73 +0.6
1,692,411 - A4249_RS08430 0.73 -0.1
1,692,411 - A4249_RS08430 0.73 +0.1
1,692,416 + A4249_RS08430 0.74 -0.5
1,692,416 + A4249_RS08430 0.74 -0.3
1,692,416 + A4249_RS08430 0.74 -0.4
1,692,417 - A4249_RS08430 0.74 +0.8
1,692,417 - A4249_RS08430 0.74 +0.5
1,692,417 - A4249_RS08430 0.74 +0.1
1,692,417 - A4249_RS08430 0.74 -0.1
1,692,417 - A4249_RS08430 0.74 -0.1
1,692,435 - A4249_RS08430 0.77 -0.2
1,692,536 + -0.9
1,692,536 + -0.1
1,692,584 + -0.2
1,692,635 + -0.7
1,692,635 + -0.5
1,692,635 + -0.2
1,692,635 + -0.1
1,692,635 + +0.4
1,692,635 + -0.3
1,692,636 - -0.7
1,692,636 - +0.0
1,692,684 + -1.0
1,692,684 + +0.8
1,692,684 + -0.2
1,692,684 + +0.7
1,692,684 + -0.5
1,692,684 + +0.4
1,692,684 + +0.5
1,692,684 + +0.4
1,692,684 + -0.2
1,692,684 + +0.3
1,692,684 + -0.1
1,692,684 + -0.4
1,692,684 + -0.9
1,692,721 - +0.4
1,692,936 + +0.9
1,692,936 + +0.6
1,692,936 + +0.1
1,692,966 + -0.4
1,693,482 - A4249_RS08440 0.71 +0.7

Or see this region's nucleotide sequence