Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08400

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08390 and A4249_RS08395 are separated by 13 nucleotidesA4249_RS08395 and A4249_RS08400 are separated by 171 nucleotidesA4249_RS08400 and A4249_RS08405 are separated by 61 nucleotidesA4249_RS08405 and A4249_RS08410 are separated by 275 nucleotides A4249_RS08390: A4249_RS08390 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 1,683,354 to 1,685,654 _RS08390 A4249_RS08395: A4249_RS08395 - ATP-dependent Clp protease adapter ClpS, at 1,685,668 to 1,685,997 _RS08395 A4249_RS08400: A4249_RS08400 - nuclear transport factor 2 family protein, at 1,686,169 to 1,686,642 _RS08400 A4249_RS08405: A4249_RS08405 - TIGR01841 family phasin, at 1,686,704 to 1,687,195 _RS08405 A4249_RS08410: A4249_RS08410 - D-alanyl-D-alanine carboxypeptidase family protein, at 1,687,471 to 1,688,961 _RS08410 Position (kb) 1686 1687Strain fitness (log2 ratio) -2 -1 0 1at 1685.257 kb on + strand, within A4249_RS08390at 1685.287 kb on + strand, within A4249_RS08390at 1685.288 kb on - strand, within A4249_RS08390at 1685.288 kb on - strand, within A4249_RS08390at 1685.288 kb on - strand, within A4249_RS08390at 1685.288 kb on - strand, within A4249_RS08390at 1685.467 kb on + strandat 1685.467 kb on + strandat 1685.468 kb on - strandat 1685.468 kb on - strandat 1685.468 kb on - strandat 1685.468 kb on - strandat 1685.468 kb on - strandat 1685.468 kb on - strandat 1685.578 kb on + strandat 1685.578 kb on + strandat 1685.579 kb on - strandat 1685.579 kb on - strandat 1685.579 kb on - strandat 1685.603 kb on - strandat 1685.654 kb on + strandat 1685.654 kb on + strandat 1685.654 kb on + strandat 1685.655 kb on - strandat 1685.655 kb on - strandat 1685.655 kb on - strandat 1685.655 kb on - strandat 1685.655 kb on - strandat 1685.655 kb on - strandat 1685.655 kb on - strandat 1685.655 kb on - strandat 1685.756 kb on + strand, within A4249_RS08395at 1685.756 kb on + strand, within A4249_RS08395at 1685.756 kb on + strand, within A4249_RS08395at 1685.756 kb on + strand, within A4249_RS08395at 1685.757 kb on - strand, within A4249_RS08395at 1685.757 kb on - strand, within A4249_RS08395at 1685.855 kb on + strand, within A4249_RS08395at 1685.855 kb on + strand, within A4249_RS08395at 1685.855 kb on + strand, within A4249_RS08395at 1685.855 kb on + strand, within A4249_RS08395at 1685.855 kb on + strand, within A4249_RS08395at 1685.856 kb on - strand, within A4249_RS08395at 1685.906 kb on + strand, within A4249_RS08395at 1685.989 kb on + strandat 1685.989 kb on + strandat 1685.989 kb on + strandat 1685.990 kb on - strandat 1685.990 kb on - strandat 1685.990 kb on - strandat 1685.990 kb on - strandat 1685.990 kb on - strandat 1686.036 kb on + strandat 1686.219 kb on + strand, within A4249_RS08400at 1686.219 kb on + strand, within A4249_RS08400at 1686.219 kb on + strand, within A4249_RS08400at 1686.220 kb on - strand, within A4249_RS08400at 1686.220 kb on - strand, within A4249_RS08400at 1686.220 kb on - strand, within A4249_RS08400at 1686.385 kb on + strand, within A4249_RS08400at 1686.385 kb on + strand, within A4249_RS08400at 1686.386 kb on - strand, within A4249_RS08400at 1686.466 kb on + strand, within A4249_RS08400at 1686.466 kb on + strand, within A4249_RS08400at 1686.466 kb on + strand, within A4249_RS08400at 1686.466 kb on + strand, within A4249_RS08400at 1686.467 kb on - strand, within A4249_RS08400at 1686.467 kb on - strand, within A4249_RS08400at 1686.467 kb on - strand, within A4249_RS08400at 1686.481 kb on + strand, within A4249_RS08400at 1686.481 kb on + strand, within A4249_RS08400at 1686.481 kb on + strand, within A4249_RS08400at 1686.482 kb on - strand, within A4249_RS08400at 1686.482 kb on - strand, within A4249_RS08400at 1686.514 kb on + strand, within A4249_RS08400at 1686.514 kb on + strand, within A4249_RS08400at 1686.515 kb on - strand, within A4249_RS08400at 1686.515 kb on - strand, within A4249_RS08400at 1686.515 kb on - strand, within A4249_RS08400at 1686.619 kb on + strandat 1686.620 kb on - strandat 1686.706 kb on - strandat 1686.820 kb on - strand, within A4249_RS08405at 1686.820 kb on - strand, within A4249_RS08405at 1686.820 kb on - strand, within A4249_RS08405at 1686.820 kb on - strand, within A4249_RS08405at 1686.820 kb on - strand, within A4249_RS08405at 1687.210 kb on + strandat 1687.211 kb on - strandat 1687.245 kb on + strandat 1687.245 kb on + strandat 1687.246 kb on - strandat 1687.246 kb on - strandat 1687.324 kb on + strandat 1687.401 kb on + strandat 1687.401 kb on + strandat 1687.401 kb on + strandat 1687.402 kb on - strandat 1687.402 kb on - strandat 1687.402 kb on - strandat 1687.402 kb on - strandat 1687.402 kb on - strandat 1687.406 kb on + strandat 1687.406 kb on + strandat 1687.406 kb on + strandat 1687.407 kb on - strandat 1687.565 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,685,257 + A4249_RS08390 0.83 -1.2
1,685,287 + A4249_RS08390 0.84 +0.6
1,685,288 - A4249_RS08390 0.84 +0.7
1,685,288 - A4249_RS08390 0.84 +0.1
1,685,288 - A4249_RS08390 0.84 -0.0
1,685,288 - A4249_RS08390 0.84 -1.4
1,685,467 + +0.4
1,685,467 + +0.7
1,685,468 - -2.2
1,685,468 - -0.1
1,685,468 - +0.5
1,685,468 - +0.2
1,685,468 - -0.4
1,685,468 - -1.4
1,685,578 + +1.0
1,685,578 + -1.9
1,685,579 - -0.4
1,685,579 - -0.2
1,685,579 - +0.3
1,685,603 - -0.3
1,685,654 + +0.5
1,685,654 + -0.1
1,685,654 + +0.1
1,685,655 - -0.9
1,685,655 - +0.1
1,685,655 - -1.4
1,685,655 - +0.8
1,685,655 - +0.2
1,685,655 - -0.6
1,685,655 - +0.7
1,685,655 - +0.3
1,685,756 + A4249_RS08395 0.27 -1.8
1,685,756 + A4249_RS08395 0.27 +0.4
1,685,756 + A4249_RS08395 0.27 +0.6
1,685,756 + A4249_RS08395 0.27 +0.2
1,685,757 - A4249_RS08395 0.27 +0.4
1,685,757 - A4249_RS08395 0.27 +0.4
1,685,855 + A4249_RS08395 0.57 -0.1
1,685,855 + A4249_RS08395 0.57 +0.1
1,685,855 + A4249_RS08395 0.57 +0.1
1,685,855 + A4249_RS08395 0.57 +0.2
1,685,855 + A4249_RS08395 0.57 +0.1
1,685,856 - A4249_RS08395 0.57 -0.2
1,685,906 + A4249_RS08395 0.72 +1.1
1,685,989 + +0.6
1,685,989 + -1.2
1,685,989 + +0.0
1,685,990 - -0.4
1,685,990 - -0.7
1,685,990 - +0.4
1,685,990 - -1.1
1,685,990 - -0.6
1,686,036 + +0.5
1,686,219 + A4249_RS08400 0.11 +0.6
1,686,219 + A4249_RS08400 0.11 -0.2
1,686,219 + A4249_RS08400 0.11 +0.2
1,686,220 - A4249_RS08400 0.11 +0.0
1,686,220 - A4249_RS08400 0.11 +0.6
1,686,220 - A4249_RS08400 0.11 -0.4
1,686,385 + A4249_RS08400 0.46 -0.2
1,686,385 + A4249_RS08400 0.46 +0.2
1,686,386 - A4249_RS08400 0.46 -0.1
1,686,466 + A4249_RS08400 0.63 -0.5
1,686,466 + A4249_RS08400 0.63 -1.2
1,686,466 + A4249_RS08400 0.63 -1.0
1,686,466 + A4249_RS08400 0.63 -0.2
1,686,467 - A4249_RS08400 0.63 +0.8
1,686,467 - A4249_RS08400 0.63 +0.3
1,686,467 - A4249_RS08400 0.63 +0.5
1,686,481 + A4249_RS08400 0.66 +0.1
1,686,481 + A4249_RS08400 0.66 -0.4
1,686,481 + A4249_RS08400 0.66 -0.4
1,686,482 - A4249_RS08400 0.66 -0.2
1,686,482 - A4249_RS08400 0.66 -0.4
1,686,514 + A4249_RS08400 0.73 +0.9
1,686,514 + A4249_RS08400 0.73 -0.0
1,686,515 - A4249_RS08400 0.73 -0.4
1,686,515 - A4249_RS08400 0.73 +1.2
1,686,515 - A4249_RS08400 0.73 -1.4
1,686,619 + -0.1
1,686,620 - -0.1
1,686,706 - +0.0
1,686,820 - A4249_RS08405 0.24 -0.3
1,686,820 - A4249_RS08405 0.24 -1.1
1,686,820 - A4249_RS08405 0.24 +0.1
1,686,820 - A4249_RS08405 0.24 +0.2
1,686,820 - A4249_RS08405 0.24 -0.1
1,687,210 + -0.4
1,687,211 - -0.2
1,687,245 + -0.8
1,687,245 + +0.5
1,687,246 - -0.6
1,687,246 - +0.7
1,687,324 + -0.9
1,687,401 + -0.1
1,687,401 + -0.5
1,687,401 + +0.2
1,687,402 - +0.2
1,687,402 - +0.4
1,687,402 - +0.1
1,687,402 - +0.2
1,687,402 - -0.2
1,687,406 + -0.1
1,687,406 + -0.8
1,687,406 + -0.4
1,687,407 - -0.3
1,687,565 - -0.3

Or see this region's nucleotide sequence