Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08330

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS08325 and A4249_RS08330 overlap by 4 nucleotidesA4249_RS08330 and A4249_RS08335 are separated by 1 nucleotidesA4249_RS08335 and A4249_RS08340 are separated by 2 nucleotides A4249_RS08325: A4249_RS08325 - ribonuclease R, at 1,671,154 to 1,673,463 _RS08325 A4249_RS08330: A4249_RS08330 - NUDIX domain-containing protein, at 1,673,460 to 1,674,161 _RS08330 A4249_RS08335: A4249_RS08335 - DUF5990 family protein, at 1,674,163 to 1,674,576 _RS08335 A4249_RS08340: A4249_RS08340 - hypothetical protein, at 1,674,579 to 1,675,145 _RS08340 Position (kb) 1673 1674 1675Strain fitness (log2 ratio) -1 0 1 2at 1672.585 kb on + strand, within A4249_RS08325at 1672.780 kb on + strand, within A4249_RS08325at 1672.781 kb on - strand, within A4249_RS08325at 1672.781 kb on - strand, within A4249_RS08325at 1672.855 kb on + strand, within A4249_RS08325at 1672.855 kb on + strand, within A4249_RS08325at 1673.014 kb on + strand, within A4249_RS08325at 1673.014 kb on + strand, within A4249_RS08325at 1673.014 kb on + strand, within A4249_RS08325at 1673.015 kb on - strand, within A4249_RS08325at 1673.015 kb on - strand, within A4249_RS08325at 1673.015 kb on - strand, within A4249_RS08325at 1673.015 kb on - strand, within A4249_RS08325at 1673.015 kb on - strand, within A4249_RS08325at 1673.016 kb on + strand, within A4249_RS08325at 1673.016 kb on + strand, within A4249_RS08325at 1673.017 kb on - strand, within A4249_RS08325at 1673.017 kb on - strand, within A4249_RS08325at 1673.017 kb on - strand, within A4249_RS08325at 1673.017 kb on - strand, within A4249_RS08325at 1673.026 kb on + strand, within A4249_RS08325at 1673.155 kb on + strand, within A4249_RS08325at 1673.155 kb on + strand, within A4249_RS08325at 1673.155 kb on + strand, within A4249_RS08325at 1673.839 kb on - strand, within A4249_RS08330at 1673.880 kb on + strand, within A4249_RS08330at 1673.880 kb on + strand, within A4249_RS08330at 1673.880 kb on + strand, within A4249_RS08330at 1673.880 kb on + strand, within A4249_RS08330at 1673.880 kb on + strand, within A4249_RS08330at 1673.881 kb on - strand, within A4249_RS08330at 1673.881 kb on - strand, within A4249_RS08330at 1673.881 kb on - strand, within A4249_RS08330at 1673.881 kb on - strand, within A4249_RS08330at 1673.897 kb on + strand, within A4249_RS08330at 1673.898 kb on - strand, within A4249_RS08330at 1673.898 kb on - strand, within A4249_RS08330at 1674.223 kb on + strand, within A4249_RS08335at 1674.223 kb on + strand, within A4249_RS08335at 1674.224 kb on - strand, within A4249_RS08335at 1674.224 kb on - strand, within A4249_RS08335at 1674.224 kb on - strand, within A4249_RS08335at 1674.224 kb on - strand, within A4249_RS08335at 1674.224 kb on - strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.374 kb on - strand, within A4249_RS08335at 1674.374 kb on - strand, within A4249_RS08335at 1674.374 kb on - strand, within A4249_RS08335at 1674.447 kb on + strand, within A4249_RS08335at 1674.447 kb on + strand, within A4249_RS08335at 1674.447 kb on + strand, within A4249_RS08335at 1674.448 kb on - strand, within A4249_RS08335at 1674.448 kb on - strand, within A4249_RS08335at 1674.448 kb on - strand, within A4249_RS08335at 1674.448 kb on - strand, within A4249_RS08335at 1674.545 kb on + strandat 1674.546 kb on - strandat 1674.546 kb on - strandat 1674.647 kb on - strand, within A4249_RS08340at 1674.723 kb on + strand, within A4249_RS08340at 1674.723 kb on + strand, within A4249_RS08340at 1674.724 kb on - strand, within A4249_RS08340at 1674.796 kb on + strand, within A4249_RS08340at 1674.797 kb on - strand, within A4249_RS08340at 1674.797 kb on - strand, within A4249_RS08340at 1674.917 kb on + strand, within A4249_RS08340at 1674.917 kb on + strand, within A4249_RS08340at 1674.917 kb on + strand, within A4249_RS08340at 1674.917 kb on + strand, within A4249_RS08340at 1674.917 kb on + strand, within A4249_RS08340at 1674.917 kb on + strand, within A4249_RS08340at 1674.917 kb on + strand, within A4249_RS08340at 1674.918 kb on - strand, within A4249_RS08340at 1674.918 kb on - strand, within A4249_RS08340at 1674.918 kb on - strand, within A4249_RS08340at 1674.918 kb on - strand, within A4249_RS08340at 1675.156 kb on + strandat 1675.156 kb on + strandat 1675.156 kb on + strandat 1675.156 kb on + strandat 1675.156 kb on + strandat 1675.156 kb on + strandat 1675.157 kb on - strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.159 kb on - strandat 1675.159 kb on - strandat 1675.159 kb on - strandat 1675.159 kb on - strandat 1675.159 kb on - strandat 1675.159 kb on - strandat 1675.159 kb on - strandat 1675.159 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
1,672,585 + A4249_RS08325 0.62 +0.7
1,672,780 + A4249_RS08325 0.70 -1.0
1,672,781 - A4249_RS08325 0.70 -1.1
1,672,781 - A4249_RS08325 0.70 -1.0
1,672,855 + A4249_RS08325 0.74 +0.4
1,672,855 + A4249_RS08325 0.74 +0.6
1,673,014 + A4249_RS08325 0.81 -1.0
1,673,014 + A4249_RS08325 0.81 -0.3
1,673,014 + A4249_RS08325 0.81 -0.0
1,673,015 - A4249_RS08325 0.81 +0.3
1,673,015 - A4249_RS08325 0.81 +0.3
1,673,015 - A4249_RS08325 0.81 -0.5
1,673,015 - A4249_RS08325 0.81 +0.7
1,673,015 - A4249_RS08325 0.81 +0.5
1,673,016 + A4249_RS08325 0.81 +0.2
1,673,016 + A4249_RS08325 0.81 +0.4
1,673,017 - A4249_RS08325 0.81 -1.4
1,673,017 - A4249_RS08325 0.81 +0.4
1,673,017 - A4249_RS08325 0.81 +0.8
1,673,017 - A4249_RS08325 0.81 +0.3
1,673,026 + A4249_RS08325 0.81 -1.4
1,673,155 + A4249_RS08325 0.87 -1.0
1,673,155 + A4249_RS08325 0.87 -0.2
1,673,155 + A4249_RS08325 0.87 -0.1
1,673,839 - A4249_RS08330 0.54 -0.7
1,673,880 + A4249_RS08330 0.60 +0.4
1,673,880 + A4249_RS08330 0.60 -0.6
1,673,880 + A4249_RS08330 0.60 +0.2
1,673,880 + A4249_RS08330 0.60 +0.5
1,673,880 + A4249_RS08330 0.60 -0.9
1,673,881 - A4249_RS08330 0.60 -0.9
1,673,881 - A4249_RS08330 0.60 +0.6
1,673,881 - A4249_RS08330 0.60 -1.2
1,673,881 - A4249_RS08330 0.60 -0.2
1,673,897 + A4249_RS08330 0.62 +0.2
1,673,898 - A4249_RS08330 0.62 +0.0
1,673,898 - A4249_RS08330 0.62 +0.3
1,674,223 + A4249_RS08335 0.14 -0.3
1,674,223 + A4249_RS08335 0.14 +0.2
1,674,224 - A4249_RS08335 0.15 -0.2
1,674,224 - A4249_RS08335 0.15 -0.0
1,674,224 - A4249_RS08335 0.15 +0.3
1,674,224 - A4249_RS08335 0.15 -0.3
1,674,224 - A4249_RS08335 0.15 +0.9
1,674,373 + A4249_RS08335 0.51 +0.4
1,674,373 + A4249_RS08335 0.51 +1.0
1,674,373 + A4249_RS08335 0.51 +1.1
1,674,373 + A4249_RS08335 0.51 +0.4
1,674,373 + A4249_RS08335 0.51 -0.2
1,674,373 + A4249_RS08335 0.51 -0.4
1,674,373 + A4249_RS08335 0.51 -0.7
1,674,373 + A4249_RS08335 0.51 +0.6
1,674,373 + A4249_RS08335 0.51 +0.5
1,674,373 + A4249_RS08335 0.51 -0.7
1,674,373 + A4249_RS08335 0.51 -0.2
1,674,373 + A4249_RS08335 0.51 +0.1
1,674,373 + A4249_RS08335 0.51 -0.4
1,674,374 - A4249_RS08335 0.51 +0.0
1,674,374 - A4249_RS08335 0.51 -0.4
1,674,374 - A4249_RS08335 0.51 -0.3
1,674,447 + A4249_RS08335 0.69 -0.2
1,674,447 + A4249_RS08335 0.69 -0.1
1,674,447 + A4249_RS08335 0.69 -0.4
1,674,448 - A4249_RS08335 0.69 +0.7
1,674,448 - A4249_RS08335 0.69 +0.2
1,674,448 - A4249_RS08335 0.69 +1.5
1,674,448 - A4249_RS08335 0.69 +0.8
1,674,545 + +0.0
1,674,546 - -1.0
1,674,546 - +0.3
1,674,647 - A4249_RS08340 0.12 -0.7
1,674,723 + A4249_RS08340 0.25 +0.4
1,674,723 + A4249_RS08340 0.25 +0.1
1,674,724 - A4249_RS08340 0.26 -0.1
1,674,796 + A4249_RS08340 0.38 -0.3
1,674,797 - A4249_RS08340 0.38 +0.2
1,674,797 - A4249_RS08340 0.38 +1.1
1,674,917 + A4249_RS08340 0.60 +0.4
1,674,917 + A4249_RS08340 0.60 -0.0
1,674,917 + A4249_RS08340 0.60 -0.7
1,674,917 + A4249_RS08340 0.60 -0.3
1,674,917 + A4249_RS08340 0.60 -0.3
1,674,917 + A4249_RS08340 0.60 -0.2
1,674,917 + A4249_RS08340 0.60 -0.2
1,674,918 - A4249_RS08340 0.60 -0.2
1,674,918 - A4249_RS08340 0.60 +0.5
1,674,918 - A4249_RS08340 0.60 -0.2
1,674,918 - A4249_RS08340 0.60 -0.9
1,675,156 + +0.3
1,675,156 + -0.2
1,675,156 + -1.3
1,675,156 + -0.2
1,675,156 + -1.4
1,675,156 + -0.1
1,675,157 - +0.2
1,675,158 + -0.6
1,675,158 + +1.4
1,675,158 + -0.4
1,675,158 + +0.6
1,675,158 + +0.3
1,675,158 + +1.0
1,675,158 + -0.3
1,675,158 + -0.3
1,675,158 + -0.3
1,675,158 + -0.5
1,675,158 + -0.4
1,675,158 + +0.1
1,675,158 + -0.1
1,675,159 - +1.1
1,675,159 - +2.5
1,675,159 - +1.5
1,675,159 - +1.1
1,675,159 - +1.1
1,675,159 - -0.8
1,675,159 - -0.2
1,675,159 - -0.5

Or see this region's nucleotide sequence