Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08290

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08280 and A4249_RS08285 are separated by 42 nucleotidesA4249_RS08285 and A4249_RS08290 are separated by 473 nucleotidesA4249_RS08290 and A4249_RS08295 are separated by 38 nucleotidesA4249_RS08295 and A4249_RS08300 are separated by 176 nucleotides A4249_RS08280: A4249_RS08280 - EAL domain-containing protein, at 1,664,116 to 1,664,883 _RS08280 A4249_RS08285: A4249_RS08285 - preQ(1) synthase, at 1,664,926 to 1,665,387 _RS08285 A4249_RS08290: A4249_RS08290 - nitronate monooxygenase family protein, at 1,665,861 to 1,666,793 _RS08290 A4249_RS08295: A4249_RS08295 - TorF family putative porin, at 1,666,832 to 1,667,548 _RS08295 A4249_RS08300: A4249_RS08300 - cold-shock protein, at 1,667,725 to 1,667,937 _RS08300 Position (kb) 1665 1666 1667Strain fitness (log2 ratio) -2 -1 0 1at 1664.927 kb on + strandat 1664.928 kb on - strandat 1665.038 kb on + strand, within A4249_RS08285at 1665.146 kb on + strand, within A4249_RS08285at 1665.146 kb on + strand, within A4249_RS08285at 1665.146 kb on + strand, within A4249_RS08285at 1665.192 kb on - strand, within A4249_RS08285at 1665.275 kb on + strand, within A4249_RS08285at 1665.275 kb on + strand, within A4249_RS08285at 1665.275 kb on + strand, within A4249_RS08285at 1665.398 kb on + strandat 1665.398 kb on + strandat 1665.398 kb on + strandat 1665.399 kb on - strandat 1665.399 kb on - strandat 1665.608 kb on - strandat 1665.608 kb on - strandat 1665.608 kb on - strandat 1665.608 kb on - strandat 1665.621 kb on + strandat 1665.621 kb on + strandat 1665.621 kb on + strandat 1665.621 kb on + strandat 1665.621 kb on + strandat 1665.621 kb on + strandat 1665.621 kb on + strandat 1665.621 kb on + strandat 1665.621 kb on + strandat 1665.622 kb on - strandat 1665.622 kb on - strandat 1665.622 kb on - strandat 1665.622 kb on - strandat 1665.622 kb on - strandat 1665.622 kb on - strandat 1665.622 kb on - strandat 1665.622 kb on - strandat 1665.622 kb on - strandat 1665.622 kb on - strandat 1665.673 kb on + strandat 1665.673 kb on + strandat 1665.674 kb on - strandat 1665.674 kb on - strandat 1665.689 kb on + strandat 1665.689 kb on + strandat 1665.689 kb on + strandat 1665.689 kb on + strandat 1665.689 kb on + strandat 1665.689 kb on + strandat 1665.689 kb on + strandat 1665.689 kb on + strandat 1665.690 kb on - strandat 1665.690 kb on - strandat 1665.690 kb on - strandat 1665.755 kb on - strandat 1665.755 kb on - strandat 1665.755 kb on - strandat 1665.755 kb on - strandat 1665.763 kb on + strandat 1665.834 kb on - strandat 1665.834 kb on - strandat 1666.443 kb on + strand, within A4249_RS08290at 1666.443 kb on + strand, within A4249_RS08290at 1666.443 kb on + strand, within A4249_RS08290at 1666.443 kb on + strand, within A4249_RS08290at 1666.443 kb on + strand, within A4249_RS08290at 1666.443 kb on + strand, within A4249_RS08290at 1666.443 kb on + strand, within A4249_RS08290at 1666.444 kb on - strand, within A4249_RS08290at 1666.444 kb on - strand, within A4249_RS08290at 1666.444 kb on - strand, within A4249_RS08290at 1666.444 kb on - strand, within A4249_RS08290at 1666.444 kb on - strand, within A4249_RS08290at 1666.444 kb on - strand, within A4249_RS08290at 1666.444 kb on - strand, within A4249_RS08290at 1666.444 kb on - strand, within A4249_RS08290at 1666.444 kb on - strand, within A4249_RS08290at 1666.444 kb on - strand, within A4249_RS08290at 1666.444 kb on - strand, within A4249_RS08290at 1666.445 kb on + strand, within A4249_RS08290at 1666.445 kb on + strand, within A4249_RS08290at 1666.445 kb on + strand, within A4249_RS08290at 1666.446 kb on - strand, within A4249_RS08290at 1666.494 kb on + strand, within A4249_RS08290at 1666.494 kb on + strand, within A4249_RS08290at 1666.494 kb on + strand, within A4249_RS08290at 1666.494 kb on + strand, within A4249_RS08290at 1666.495 kb on - strand, within A4249_RS08290at 1666.495 kb on - strand, within A4249_RS08290at 1666.495 kb on - strand, within A4249_RS08290at 1666.495 kb on - strand, within A4249_RS08290at 1666.791 kb on + strandat 1666.792 kb on - strandat 1667.012 kb on + strand, within A4249_RS08295at 1667.057 kb on + strand, within A4249_RS08295at 1667.057 kb on + strand, within A4249_RS08295at 1667.057 kb on + strand, within A4249_RS08295at 1667.058 kb on - strand, within A4249_RS08295at 1667.058 kb on - strand, within A4249_RS08295at 1667.058 kb on - strand, within A4249_RS08295at 1667.058 kb on - strand, within A4249_RS08295at 1667.058 kb on - strand, within A4249_RS08295at 1667.058 kb on - strand, within A4249_RS08295at 1667.058 kb on - strand, within A4249_RS08295at 1667.171 kb on + strand, within A4249_RS08295at 1667.171 kb on + strand, within A4249_RS08295at 1667.172 kb on - strand, within A4249_RS08295at 1667.201 kb on + strand, within A4249_RS08295at 1667.201 kb on + strand, within A4249_RS08295at 1667.201 kb on + strand, within A4249_RS08295at 1667.201 kb on + strand, within A4249_RS08295at 1667.202 kb on - strand, within A4249_RS08295at 1667.279 kb on + strand, within A4249_RS08295at 1667.280 kb on - strand, within A4249_RS08295at 1667.409 kb on - strand, within A4249_RS08295at 1667.435 kb on + strand, within A4249_RS08295at 1667.435 kb on + strand, within A4249_RS08295at 1667.435 kb on + strand, within A4249_RS08295at 1667.435 kb on + strand, within A4249_RS08295at 1667.435 kb on + strand, within A4249_RS08295at 1667.435 kb on + strand, within A4249_RS08295at 1667.436 kb on - strand, within A4249_RS08295at 1667.436 kb on - strand, within A4249_RS08295at 1667.436 kb on - strand, within A4249_RS08295at 1667.436 kb on - strand, within A4249_RS08295at 1667.436 kb on - strand, within A4249_RS08295at 1667.436 kb on - strand, within A4249_RS08295at 1667.436 kb on - strand, within A4249_RS08295at 1667.436 kb on - strand, within A4249_RS08295at 1667.471 kb on + strand, within A4249_RS08295at 1667.471 kb on + strand, within A4249_RS08295at 1667.471 kb on + strand, within A4249_RS08295at 1667.474 kb on + strand, within A4249_RS08295at 1667.474 kb on + strand, within A4249_RS08295at 1667.474 kb on + strand, within A4249_RS08295at 1667.475 kb on - strand, within A4249_RS08295at 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.508 kb on - strandat 1667.508 kb on - strandat 1667.508 kb on - strandat 1667.508 kb on - strandat 1667.565 kb on + strandat 1667.587 kb on + strandat 1667.587 kb on + strandat 1667.587 kb on + strandat 1667.587 kb on + strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.741 kb on + strandat 1667.741 kb on + strandat 1667.741 kb on + strandat 1667.741 kb on + strandat 1667.741 kb on + strandat 1667.742 kb on - strandat 1667.742 kb on - strandat 1667.742 kb on - strandat 1667.742 kb on - strandat 1667.749 kb on + strand, within A4249_RS08300at 1667.750 kb on - strand, within A4249_RS08300at 1667.750 kb on - strand, within A4249_RS08300

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,664,927 + -0.7
1,664,928 - -1.1
1,665,038 + A4249_RS08285 0.24 -2.3
1,665,146 + A4249_RS08285 0.48 +0.1
1,665,146 + A4249_RS08285 0.48 +0.2
1,665,146 + A4249_RS08285 0.48 -1.5
1,665,192 - A4249_RS08285 0.58 -0.9
1,665,275 + A4249_RS08285 0.76 -1.2
1,665,275 + A4249_RS08285 0.76 +0.6
1,665,275 + A4249_RS08285 0.76 -0.8
1,665,398 + +0.2
1,665,398 + +0.5
1,665,398 + -0.2
1,665,399 - -1.0
1,665,399 - +0.1
1,665,608 - +0.6
1,665,608 - +0.1
1,665,608 - +0.1
1,665,608 - +0.6
1,665,621 + -0.9
1,665,621 + +0.2
1,665,621 + -0.4
1,665,621 + +1.3
1,665,621 + -0.3
1,665,621 + +0.3
1,665,621 + -0.5
1,665,621 + +0.1
1,665,621 + -0.4
1,665,622 - +0.7
1,665,622 - -0.1
1,665,622 - +0.0
1,665,622 - +1.1
1,665,622 - -0.1
1,665,622 - +0.4
1,665,622 - -0.6
1,665,622 - +0.8
1,665,622 - +0.6
1,665,622 - +0.1
1,665,673 + -1.4
1,665,673 + +1.1
1,665,674 - +0.1
1,665,674 - +0.4
1,665,689 + +0.2
1,665,689 + +0.1
1,665,689 + +0.2
1,665,689 + +0.2
1,665,689 + -0.2
1,665,689 + +0.1
1,665,689 + +0.2
1,665,689 + -0.4
1,665,690 - -0.8
1,665,690 - +0.3
1,665,690 - -0.9
1,665,755 - -1.1
1,665,755 - -0.6
1,665,755 - +1.3
1,665,755 - +0.6
1,665,763 + +1.0
1,665,834 - +0.2
1,665,834 - -0.4
1,666,443 + A4249_RS08290 0.62 -1.0
1,666,443 + A4249_RS08290 0.62 -0.6
1,666,443 + A4249_RS08290 0.62 -0.2
1,666,443 + A4249_RS08290 0.62 -0.4
1,666,443 + A4249_RS08290 0.62 -0.4
1,666,443 + A4249_RS08290 0.62 -1.5
1,666,443 + A4249_RS08290 0.62 +0.2
1,666,444 - A4249_RS08290 0.62 -0.3
1,666,444 - A4249_RS08290 0.62 +0.0
1,666,444 - A4249_RS08290 0.62 -0.3
1,666,444 - A4249_RS08290 0.62 -0.6
1,666,444 - A4249_RS08290 0.62 -0.3
1,666,444 - A4249_RS08290 0.62 +0.8
1,666,444 - A4249_RS08290 0.62 +0.1
1,666,444 - A4249_RS08290 0.62 -0.5
1,666,444 - A4249_RS08290 0.62 -0.3
1,666,444 - A4249_RS08290 0.62 +0.1
1,666,444 - A4249_RS08290 0.62 -0.0
1,666,445 + A4249_RS08290 0.63 -0.4
1,666,445 + A4249_RS08290 0.63 +0.3
1,666,445 + A4249_RS08290 0.63 +0.8
1,666,446 - A4249_RS08290 0.63 -0.5
1,666,494 + A4249_RS08290 0.68 +0.3
1,666,494 + A4249_RS08290 0.68 +0.2
1,666,494 + A4249_RS08290 0.68 -0.1
1,666,494 + A4249_RS08290 0.68 -1.3
1,666,495 - A4249_RS08290 0.68 +0.2
1,666,495 - A4249_RS08290 0.68 -0.2
1,666,495 - A4249_RS08290 0.68 +0.6
1,666,495 - A4249_RS08290 0.68 -1.3
1,666,791 + -0.6
1,666,792 - +0.9
1,667,012 + A4249_RS08295 0.25 -0.6
1,667,057 + A4249_RS08295 0.31 -0.7
1,667,057 + A4249_RS08295 0.31 -0.2
1,667,057 + A4249_RS08295 0.31 +0.1
1,667,058 - A4249_RS08295 0.32 +0.3
1,667,058 - A4249_RS08295 0.32 -0.0
1,667,058 - A4249_RS08295 0.32 -0.7
1,667,058 - A4249_RS08295 0.32 +0.1
1,667,058 - A4249_RS08295 0.32 -0.4
1,667,058 - A4249_RS08295 0.32 -0.1
1,667,058 - A4249_RS08295 0.32 -0.2
1,667,171 + A4249_RS08295 0.47 +0.0
1,667,171 + A4249_RS08295 0.47 -0.4
1,667,172 - A4249_RS08295 0.47 -0.7
1,667,201 + A4249_RS08295 0.51 -0.1
1,667,201 + A4249_RS08295 0.51 +0.2
1,667,201 + A4249_RS08295 0.51 -0.3
1,667,201 + A4249_RS08295 0.51 +0.2
1,667,202 - A4249_RS08295 0.52 +0.6
1,667,279 + A4249_RS08295 0.62 -1.7
1,667,280 - A4249_RS08295 0.62 +0.4
1,667,409 - A4249_RS08295 0.80 -0.4
1,667,435 + A4249_RS08295 0.84 +0.8
1,667,435 + A4249_RS08295 0.84 +0.5
1,667,435 + A4249_RS08295 0.84 -0.3
1,667,435 + A4249_RS08295 0.84 +0.4
1,667,435 + A4249_RS08295 0.84 +0.6
1,667,435 + A4249_RS08295 0.84 +0.3
1,667,436 - A4249_RS08295 0.84 -0.4
1,667,436 - A4249_RS08295 0.84 +0.2
1,667,436 - A4249_RS08295 0.84 +0.3
1,667,436 - A4249_RS08295 0.84 -0.4
1,667,436 - A4249_RS08295 0.84 +0.6
1,667,436 - A4249_RS08295 0.84 -0.3
1,667,436 - A4249_RS08295 0.84 -0.4
1,667,436 - A4249_RS08295 0.84 +0.6
1,667,471 + A4249_RS08295 0.89 +0.1
1,667,471 + A4249_RS08295 0.89 -0.2
1,667,471 + A4249_RS08295 0.89 -0.3
1,667,474 + A4249_RS08295 0.90 +1.0
1,667,474 + A4249_RS08295 0.90 -0.7
1,667,474 + A4249_RS08295 0.90 +0.0
1,667,475 - A4249_RS08295 0.90 -0.1
1,667,507 + -0.0
1,667,507 + -1.5
1,667,507 + +0.0
1,667,507 + +0.9
1,667,507 + +0.2
1,667,507 + -1.2
1,667,507 + +0.6
1,667,508 - -0.3
1,667,508 - +1.4
1,667,508 - +0.2
1,667,508 - -0.3
1,667,565 + -1.2
1,667,587 + -1.4
1,667,587 + +0.4
1,667,587 + -1.0
1,667,587 + -0.2
1,667,588 - -0.6
1,667,588 - -0.4
1,667,588 - +0.3
1,667,588 - -0.3
1,667,588 - +0.2
1,667,588 - +0.4
1,667,588 - +0.5
1,667,741 + +0.3
1,667,741 + -0.1
1,667,741 + -0.6
1,667,741 + -0.3
1,667,741 + -0.0
1,667,742 - +1.0
1,667,742 - +0.4
1,667,742 - -0.5
1,667,742 - +0.2
1,667,749 + A4249_RS08300 0.11 +0.2
1,667,750 - A4249_RS08300 0.12 -0.0
1,667,750 - A4249_RS08300 0.12 +0.1

Or see this region's nucleotide sequence