Experiment: Adenine 0.74 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS08265 and A4249_RS08270 are separated by 72 nucleotides A4249_RS08270 and A4249_RS08275 overlap by 29 nucleotides A4249_RS08275 and A4249_RS08280 are separated by 200 nucleotides
A4249_RS08265: A4249_RS08265 - nitroreductase, at 1,661,785 to 1,662,378
_RS08265
A4249_RS08270: A4249_RS08270 - DedA family protein, at 1,662,451 to 1,663,113
_RS08270
A4249_RS08275: A4249_RS08275 - DUF817 domain-containing protein, at 1,663,085 to 1,663,915
_RS08275
A4249_RS08280: A4249_RS08280 - EAL domain-containing protein, at 1,664,116 to 1,664,883
_RS08280
Position (kb)
1663
1664 Strain fitness (log2 ratio)
-2
-1
0
1 at 1662.232 kb on + strand, within A4249_RS08265 at 1662.232 kb on + strand, within A4249_RS08265 at 1662.233 kb on - strand, within A4249_RS08265 at 1662.233 kb on - strand, within A4249_RS08265 at 1662.233 kb on - strand, within A4249_RS08265 at 1662.238 kb on + strand, within A4249_RS08265 at 1662.238 kb on + strand, within A4249_RS08265 at 1662.238 kb on + strand, within A4249_RS08265 at 1662.238 kb on + strand, within A4249_RS08265 at 1662.239 kb on - strand, within A4249_RS08265 at 1662.239 kb on - strand, within A4249_RS08265 at 1662.376 kb on + strand at 1662.389 kb on + strand at 1662.389 kb on + strand at 1662.389 kb on + strand at 1662.389 kb on + strand at 1662.389 kb on + strand at 1662.389 kb on + strand at 1662.389 kb on + strand at 1662.389 kb on + strand at 1662.389 kb on + strand at 1662.389 kb on + strand at 1662.389 kb on + strand at 1662.389 kb on + strand at 1662.389 kb on + strand at 1662.389 kb on + strand at 1662.389 kb on + strand at 1662.389 kb on + strand at 1662.389 kb on + strand at 1662.389 kb on + strand at 1662.390 kb on - strand at 1662.390 kb on - strand at 1662.390 kb on - strand at 1662.390 kb on - strand at 1662.390 kb on - strand at 1662.390 kb on - strand at 1662.390 kb on - strand at 1662.390 kb on - strand at 1662.390 kb on - strand at 1662.390 kb on - strand at 1662.400 kb on + strand at 1662.401 kb on - strand at 1662.401 kb on - strand at 1662.498 kb on + strand at 1662.498 kb on + strand at 1662.498 kb on + strand at 1662.498 kb on + strand at 1662.498 kb on + strand at 1662.498 kb on + strand at 1662.498 kb on + strand at 1662.498 kb on + strand at 1662.498 kb on + strand at 1662.498 kb on + strand at 1662.498 kb on + strand at 1662.499 kb on - strand at 1662.499 kb on - strand at 1662.499 kb on - strand at 1662.499 kb on - strand at 1662.499 kb on - strand at 1662.499 kb on - strand at 1662.499 kb on - strand at 1662.499 kb on - strand at 1662.499 kb on - strand at 1662.499 kb on - strand at 1662.682 kb on + strand, within A4249_RS08270 at 1662.683 kb on - strand, within A4249_RS08270 at 1662.708 kb on - strand, within A4249_RS08270 at 1662.708 kb on - strand, within A4249_RS08270 at 1662.769 kb on + strand, within A4249_RS08270 at 1662.769 kb on + strand, within A4249_RS08270 at 1662.769 kb on + strand, within A4249_RS08270 at 1662.770 kb on - strand, within A4249_RS08270 at 1662.770 kb on - strand, within A4249_RS08270 at 1662.938 kb on - strand, within A4249_RS08270 at 1663.045 kb on + strand, within A4249_RS08270 at 1663.111 kb on + strand at 1663.111 kb on + strand at 1663.111 kb on + strand at 1663.111 kb on + strand at 1663.112 kb on - strand at 1663.281 kb on - strand, within A4249_RS08275 at 1663.385 kb on + strand, within A4249_RS08275 at 1663.385 kb on + strand, within A4249_RS08275 at 1663.385 kb on + strand, within A4249_RS08275 at 1663.385 kb on + strand, within A4249_RS08275 at 1663.386 kb on - strand, within A4249_RS08275 at 1663.386 kb on - strand, within A4249_RS08275 at 1663.386 kb on - strand, within A4249_RS08275 at 1663.386 kb on - strand, within A4249_RS08275 at 1663.386 kb on - strand, within A4249_RS08275 at 1663.434 kb on + strand, within A4249_RS08275 at 1663.434 kb on + strand, within A4249_RS08275 at 1663.434 kb on + strand, within A4249_RS08275 at 1663.434 kb on + strand, within A4249_RS08275 at 1663.434 kb on + strand, within A4249_RS08275 at 1663.435 kb on - strand, within A4249_RS08275 at 1663.435 kb on - strand, within A4249_RS08275 at 1663.435 kb on - strand, within A4249_RS08275 at 1663.435 kb on - strand, within A4249_RS08275 at 1663.435 kb on - strand, within A4249_RS08275 at 1663.435 kb on - strand, within A4249_RS08275 at 1663.435 kb on - strand, within A4249_RS08275 at 1663.476 kb on + strand, within A4249_RS08275 at 1663.476 kb on + strand, within A4249_RS08275 at 1663.477 kb on - strand, within A4249_RS08275 at 1663.519 kb on + strand, within A4249_RS08275 at 1663.519 kb on + strand, within A4249_RS08275 at 1663.520 kb on - strand, within A4249_RS08275 at 1663.521 kb on + strand, within A4249_RS08275 at 1663.521 kb on + strand, within A4249_RS08275 at 1663.521 kb on + strand, within A4249_RS08275 at 1663.521 kb on + strand, within A4249_RS08275 at 1663.521 kb on + strand, within A4249_RS08275 at 1663.521 kb on + strand, within A4249_RS08275 at 1663.521 kb on + strand, within A4249_RS08275 at 1663.522 kb on - strand, within A4249_RS08275 at 1663.522 kb on - strand, within A4249_RS08275 at 1663.522 kb on - strand, within A4249_RS08275 at 1663.522 kb on - strand, within A4249_RS08275 at 1663.522 kb on - strand, within A4249_RS08275 at 1663.522 kb on - strand, within A4249_RS08275 at 1663.522 kb on - strand, within A4249_RS08275 at 1663.522 kb on - strand, within A4249_RS08275 at 1663.522 kb on - strand, within A4249_RS08275 at 1663.522 kb on - strand, within A4249_RS08275 at 1663.522 kb on - strand, within A4249_RS08275 at 1663.539 kb on + strand, within A4249_RS08275 at 1663.539 kb on + strand, within A4249_RS08275 at 1663.539 kb on + strand, within A4249_RS08275 at 1663.539 kb on + strand, within A4249_RS08275 at 1663.539 kb on + strand, within A4249_RS08275 at 1663.539 kb on + strand, within A4249_RS08275 at 1663.539 kb on + strand, within A4249_RS08275 at 1663.539 kb on + strand, within A4249_RS08275 at 1663.540 kb on - strand, within A4249_RS08275 at 1663.540 kb on - strand, within A4249_RS08275 at 1663.540 kb on - strand, within A4249_RS08275 at 1663.540 kb on - strand, within A4249_RS08275 at 1663.540 kb on - strand, within A4249_RS08275 at 1663.540 kb on - strand, within A4249_RS08275 at 1663.540 kb on - strand, within A4249_RS08275 at 1663.540 kb on - strand, within A4249_RS08275 at 1663.540 kb on - strand, within A4249_RS08275 at 1663.597 kb on - strand, within A4249_RS08275 at 1663.597 kb on - strand, within A4249_RS08275 at 1663.746 kb on + strand, within A4249_RS08275 at 1663.747 kb on - strand, within A4249_RS08275 at 1663.863 kb on + strand at 1663.863 kb on + strand at 1663.863 kb on + strand at 1663.863 kb on + strand at 1663.863 kb on + strand at 1663.864 kb on - strand at 1663.963 kb on + strand at 1663.963 kb on + strand at 1663.963 kb on + strand at 1663.964 kb on - strand at 1664.031 kb on + strand at 1664.031 kb on + strand at 1664.032 kb on - strand at 1664.088 kb on + strand at 1664.089 kb on - strand at 1664.115 kb on + strand at 1664.115 kb on + strand at 1664.115 kb on + strand at 1664.115 kb on + strand at 1664.116 kb on - strand at 1664.116 kb on - strand at 1664.116 kb on - strand at 1664.116 kb on - strand at 1664.133 kb on + strand at 1664.133 kb on + strand at 1664.134 kb on - strand at 1664.215 kb on + strand, within A4249_RS08280 at 1664.271 kb on + strand, within A4249_RS08280 at 1664.271 kb on + strand, within A4249_RS08280 at 1664.271 kb on + strand, within A4249_RS08280 at 1664.272 kb on - strand, within A4249_RS08280 at 1664.272 kb on - strand, within A4249_RS08280 at 1664.272 kb on - strand, within A4249_RS08280 at 1664.290 kb on + strand, within A4249_RS08280 at 1664.290 kb on + strand, within A4249_RS08280 at 1664.291 kb on - strand, within A4249_RS08280 at 1664.291 kb on - strand, within A4249_RS08280 at 1664.306 kb on + strand, within A4249_RS08280 at 1664.306 kb on + strand, within A4249_RS08280 at 1664.307 kb on - strand, within A4249_RS08280 at 1664.307 kb on - strand, within A4249_RS08280 at 1664.307 kb on - strand, within A4249_RS08280 at 1664.307 kb on - strand, within A4249_RS08280 at 1664.346 kb on + strand, within A4249_RS08280 at 1664.398 kb on + strand, within A4249_RS08280 at 1664.398 kb on + strand, within A4249_RS08280 at 1664.399 kb on - strand, within A4249_RS08280 at 1664.399 kb on - strand, within A4249_RS08280 at 1664.399 kb on - strand, within A4249_RS08280 at 1664.399 kb on - strand, within A4249_RS08280 at 1664.399 kb on - strand, within A4249_RS08280 at 1664.439 kb on + strand, within A4249_RS08280 at 1664.440 kb on - strand, within A4249_RS08280 at 1664.533 kb on + strand, within A4249_RS08280 at 1664.534 kb on - strand, within A4249_RS08280 at 1664.534 kb on - strand, within A4249_RS08280 at 1664.800 kb on + strand, within A4249_RS08280 at 1664.800 kb on + strand, within A4249_RS08280 at 1664.800 kb on + strand, within A4249_RS08280 at 1664.800 kb on + strand, within A4249_RS08280 at 1664.801 kb on - strand, within A4249_RS08280
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C) remove 1,662,232 + A4249_RS08265 0.75 +0.1 1,662,232 + A4249_RS08265 0.75 +0.2 1,662,233 - A4249_RS08265 0.75 -0.1 1,662,233 - A4249_RS08265 0.75 -0.5 1,662,233 - A4249_RS08265 0.75 +0.2 1,662,238 + A4249_RS08265 0.76 +0.1 1,662,238 + A4249_RS08265 0.76 -0.5 1,662,238 + A4249_RS08265 0.76 +0.0 1,662,238 + A4249_RS08265 0.76 -0.9 1,662,239 - A4249_RS08265 0.76 +0.0 1,662,239 - A4249_RS08265 0.76 -1.7 1,662,376 + -0.3 1,662,389 + -0.7 1,662,389 + -0.5 1,662,389 + +0.8 1,662,389 + +1.3 1,662,389 + +0.5 1,662,389 + +0.7 1,662,389 + -1.0 1,662,389 + +0.8 1,662,389 + -0.1 1,662,389 + +0.1 1,662,389 + -0.3 1,662,389 + +0.0 1,662,389 + +0.9 1,662,389 + +0.7 1,662,389 + -0.2 1,662,389 + -0.4 1,662,389 + +0.6 1,662,389 + -0.1 1,662,390 - +0.8 1,662,390 - +0.2 1,662,390 - -0.8 1,662,390 - -0.4 1,662,390 - +0.8 1,662,390 - -0.6 1,662,390 - -0.5 1,662,390 - +0.3 1,662,390 - +0.1 1,662,390 - -0.1 1,662,400 + -0.4 1,662,401 - +0.3 1,662,401 - -0.6 1,662,498 + -1.1 1,662,498 + -0.2 1,662,498 + -0.3 1,662,498 + +0.2 1,662,498 + +0.6 1,662,498 + -0.9 1,662,498 + -0.3 1,662,498 + +0.2 1,662,498 + +0.1 1,662,498 + -0.1 1,662,498 + +0.4 1,662,499 - +0.4 1,662,499 - +0.3 1,662,499 - +1.0 1,662,499 - +0.3 1,662,499 - -0.3 1,662,499 - -1.8 1,662,499 - +1.6 1,662,499 - -0.1 1,662,499 - -0.6 1,662,499 - +0.0 1,662,682 + A4249_RS08270 0.35 +0.6 1,662,683 - A4249_RS08270 0.35 +0.8 1,662,708 - A4249_RS08270 0.39 +0.1 1,662,708 - A4249_RS08270 0.39 +1.0 1,662,769 + A4249_RS08270 0.48 -0.4 1,662,769 + A4249_RS08270 0.48 +0.4 1,662,769 + A4249_RS08270 0.48 -0.8 1,662,770 - A4249_RS08270 0.48 -0.1 1,662,770 - A4249_RS08270 0.48 -1.2 1,662,938 - A4249_RS08270 0.73 -0.0 1,663,045 + A4249_RS08270 0.90 -0.2 1,663,111 + +0.3 1,663,111 + +0.1 1,663,111 + -0.2 1,663,111 + +0.4 1,663,112 - +0.7 1,663,281 - A4249_RS08275 0.24 -0.1 1,663,385 + A4249_RS08275 0.36 +0.0 1,663,385 + A4249_RS08275 0.36 +0.2 1,663,385 + A4249_RS08275 0.36 +0.8 1,663,385 + A4249_RS08275 0.36 -0.4 1,663,386 - A4249_RS08275 0.36 +0.8 1,663,386 - A4249_RS08275 0.36 +0.0 1,663,386 - A4249_RS08275 0.36 -0.1 1,663,386 - A4249_RS08275 0.36 +0.2 1,663,386 - A4249_RS08275 0.36 -0.4 1,663,434 + A4249_RS08275 0.42 +0.6 1,663,434 + A4249_RS08275 0.42 +0.4 1,663,434 + A4249_RS08275 0.42 -2.5 1,663,434 + A4249_RS08275 0.42 +0.9 1,663,434 + A4249_RS08275 0.42 +0.2 1,663,435 - A4249_RS08275 0.42 +0.4 1,663,435 - A4249_RS08275 0.42 +1.0 1,663,435 - A4249_RS08275 0.42 -0.8 1,663,435 - A4249_RS08275 0.42 +0.2 1,663,435 - A4249_RS08275 0.42 -1.5 1,663,435 - A4249_RS08275 0.42 -1.5 1,663,435 - A4249_RS08275 0.42 -0.3 1,663,476 + A4249_RS08275 0.47 +0.3 1,663,476 + A4249_RS08275 0.47 +0.2 1,663,477 - A4249_RS08275 0.47 -0.4 1,663,519 + A4249_RS08275 0.52 -0.1 1,663,519 + A4249_RS08275 0.52 +0.1 1,663,520 - A4249_RS08275 0.52 +0.3 1,663,521 + A4249_RS08275 0.52 -0.7 1,663,521 + A4249_RS08275 0.52 -0.4 1,663,521 + A4249_RS08275 0.52 +0.6 1,663,521 + A4249_RS08275 0.52 -0.3 1,663,521 + A4249_RS08275 0.52 +0.1 1,663,521 + A4249_RS08275 0.52 -0.5 1,663,521 + A4249_RS08275 0.52 +0.1 1,663,522 - A4249_RS08275 0.53 +0.3 1,663,522 - A4249_RS08275 0.53 +0.4 1,663,522 - A4249_RS08275 0.53 -0.3 1,663,522 - A4249_RS08275 0.53 +0.5 1,663,522 - A4249_RS08275 0.53 +0.1 1,663,522 - A4249_RS08275 0.53 +0.2 1,663,522 - A4249_RS08275 0.53 -1.1 1,663,522 - A4249_RS08275 0.53 -0.4 1,663,522 - A4249_RS08275 0.53 +0.3 1,663,522 - A4249_RS08275 0.53 +0.2 1,663,522 - A4249_RS08275 0.53 -1.0 1,663,539 + A4249_RS08275 0.55 -0.1 1,663,539 + A4249_RS08275 0.55 +0.3 1,663,539 + A4249_RS08275 0.55 +1.1 1,663,539 + A4249_RS08275 0.55 +0.0 1,663,539 + A4249_RS08275 0.55 -0.4 1,663,539 + A4249_RS08275 0.55 +0.1 1,663,539 + A4249_RS08275 0.55 +0.7 1,663,539 + A4249_RS08275 0.55 +0.3 1,663,540 - A4249_RS08275 0.55 -0.1 1,663,540 - A4249_RS08275 0.55 +0.6 1,663,540 - A4249_RS08275 0.55 +0.4 1,663,540 - A4249_RS08275 0.55 +0.2 1,663,540 - A4249_RS08275 0.55 -0.7 1,663,540 - A4249_RS08275 0.55 -0.1 1,663,540 - A4249_RS08275 0.55 +0.3 1,663,540 - A4249_RS08275 0.55 -0.8 1,663,540 - A4249_RS08275 0.55 -0.0 1,663,597 - A4249_RS08275 0.62 +0.1 1,663,597 - A4249_RS08275 0.62 +0.4 1,663,746 + A4249_RS08275 0.80 +0.5 1,663,747 - A4249_RS08275 0.80 -0.2 1,663,863 + -0.5 1,663,863 + -0.1 1,663,863 + +1.6 1,663,863 + +0.3 1,663,863 + -0.1 1,663,864 - -0.1 1,663,963 + -1.3 1,663,963 + -1.0 1,663,963 + -1.2 1,663,964 - -0.6 1,664,031 + -0.4 1,664,031 + -0.0 1,664,032 - +0.1 1,664,088 + -0.3 1,664,089 - -0.5 1,664,115 + +0.6 1,664,115 + -0.1 1,664,115 + -0.1 1,664,115 + +0.8 1,664,116 - +0.1 1,664,116 - -0.5 1,664,116 - -0.1 1,664,116 - +0.2 1,664,133 + -0.4 1,664,133 + +0.2 1,664,134 - +0.1 1,664,215 + A4249_RS08280 0.13 -0.3 1,664,271 + A4249_RS08280 0.20 -0.1 1,664,271 + A4249_RS08280 0.20 +0.8 1,664,271 + A4249_RS08280 0.20 -0.4 1,664,272 - A4249_RS08280 0.20 -1.4 1,664,272 - A4249_RS08280 0.20 +0.4 1,664,272 - A4249_RS08280 0.20 -1.3 1,664,290 + A4249_RS08280 0.23 -0.4 1,664,290 + A4249_RS08280 0.23 -0.2 1,664,291 - A4249_RS08280 0.23 +1.2 1,664,291 - A4249_RS08280 0.23 +0.1 1,664,306 + A4249_RS08280 0.25 -0.7 1,664,306 + A4249_RS08280 0.25 -0.5 1,664,307 - A4249_RS08280 0.25 +0.1 1,664,307 - A4249_RS08280 0.25 +1.1 1,664,307 - A4249_RS08280 0.25 -0.0 1,664,307 - A4249_RS08280 0.25 +0.6 1,664,346 + A4249_RS08280 0.30 -0.5 1,664,398 + A4249_RS08280 0.37 -0.8 1,664,398 + A4249_RS08280 0.37 -1.5 1,664,399 - A4249_RS08280 0.37 +0.5 1,664,399 - A4249_RS08280 0.37 +0.0 1,664,399 - A4249_RS08280 0.37 -0.1 1,664,399 - A4249_RS08280 0.37 +0.9 1,664,399 - A4249_RS08280 0.37 +0.9 1,664,439 + A4249_RS08280 0.42 -0.5 1,664,440 - A4249_RS08280 0.42 +0.3 1,664,533 + A4249_RS08280 0.54 +0.5 1,664,534 - A4249_RS08280 0.54 +0.3 1,664,534 - A4249_RS08280 0.54 +0.0 1,664,800 + A4249_RS08280 0.89 +1.3 1,664,800 + A4249_RS08280 0.89 +0.5 1,664,800 + A4249_RS08280 0.89 -0.7 1,664,800 + A4249_RS08280 0.89 +0.0 1,664,801 - A4249_RS08280 0.89 +0.2
Or see this region's nucleotide sequence