Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08075

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS16610 and A4249_RS08075 are separated by 727 nucleotidesA4249_RS08075 and A4249_RS17040 are separated by 3 nucleotidesA4249_RS17040 and A4249_RS08080 are separated by 122 nucleotides A4249_RS16610: A4249_RS16610 - hypothetical protein, at 1,615,209 to 1,615,805 _RS16610 A4249_RS08075: A4249_RS08075 - hypothetical protein, at 1,616,533 to 1,617,372 _RS08075 A4249_RS17040: A4249_RS17040 - hypothetical protein, at 1,617,376 to 1,617,507 _RS17040 A4249_RS08080: A4249_RS08080 - DNA-directed RNA polymerase subunit beta', at 1,617,630 to 1,621,826 _RS08080 Position (kb) 1616 1617 1618Strain fitness (log2 ratio) -1 0 1 2at 1615.750 kb on - strandat 1615.932 kb on + strandat 1615.932 kb on + strandat 1615.932 kb on + strandat 1615.932 kb on + strandat 1615.932 kb on + strandat 1615.933 kb on - strandat 1615.933 kb on - strandat 1615.933 kb on - strandat 1615.933 kb on - strandat 1615.933 kb on - strandat 1615.991 kb on + strandat 1615.991 kb on + strandat 1615.992 kb on - strandat 1615.992 kb on - strandat 1615.992 kb on - strandat 1615.992 kb on - strandat 1616.064 kb on + strandat 1616.064 kb on + strandat 1616.223 kb on + strandat 1616.223 kb on + strandat 1616.223 kb on + strandat 1616.223 kb on + strandat 1616.224 kb on - strandat 1616.224 kb on - strandat 1616.224 kb on - strandat 1616.224 kb on - strandat 1616.224 kb on - strandat 1616.224 kb on - strandat 1616.224 kb on - strandat 1616.224 kb on - strandat 1616.224 kb on - strandat 1616.256 kb on + strandat 1616.335 kb on + strandat 1616.336 kb on - strandat 1616.336 kb on - strandat 1616.710 kb on + strand, within A4249_RS08075at 1616.710 kb on + strand, within A4249_RS08075at 1616.710 kb on + strand, within A4249_RS08075at 1616.710 kb on + strand, within A4249_RS08075at 1616.711 kb on - strand, within A4249_RS08075at 1616.711 kb on - strand, within A4249_RS08075at 1616.711 kb on - strand, within A4249_RS08075at 1616.711 kb on - strand, within A4249_RS08075at 1616.711 kb on - strand, within A4249_RS08075at 1616.711 kb on - strand, within A4249_RS08075at 1616.711 kb on - strand, within A4249_RS08075at 1616.711 kb on - strand, within A4249_RS08075at 1616.711 kb on - strand, within A4249_RS08075at 1616.711 kb on - strand, within A4249_RS08075at 1616.711 kb on - strand, within A4249_RS08075at 1616.711 kb on - strand, within A4249_RS08075at 1616.712 kb on + strand, within A4249_RS08075at 1616.713 kb on - strand, within A4249_RS08075at 1617.245 kb on + strand, within A4249_RS08075at 1617.246 kb on - strand, within A4249_RS08075at 1617.246 kb on - strand, within A4249_RS08075at 1617.246 kb on - strand, within A4249_RS08075at 1617.361 kb on - strandat 1617.361 kb on - strandat 1617.361 kb on - strandat 1617.361 kb on - strandat 1617.377 kb on + strandat 1617.377 kb on + strandat 1617.377 kb on + strandat 1617.378 kb on - strandat 1617.378 kb on - strandat 1617.392 kb on + strand, within A4249_RS17040at 1617.393 kb on - strand, within A4249_RS17040at 1617.393 kb on - strand, within A4249_RS17040at 1617.393 kb on - strand, within A4249_RS17040at 1617.475 kb on + strand, within A4249_RS17040at 1617.518 kb on + strandat 1617.518 kb on + strandat 1617.518 kb on + strandat 1617.518 kb on + strandat 1617.519 kb on - strandat 1617.519 kb on - strandat 1617.519 kb on - strandat 1617.567 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
1,615,750 - -0.0
1,615,932 + +0.1
1,615,932 + -0.9
1,615,932 + +0.1
1,615,932 + +0.3
1,615,932 + +0.5
1,615,933 - -0.4
1,615,933 - +0.3
1,615,933 - -0.3
1,615,933 - +0.3
1,615,933 - +0.0
1,615,991 + -1.1
1,615,991 + -0.1
1,615,992 - +0.1
1,615,992 - -0.0
1,615,992 - -0.5
1,615,992 - +1.2
1,616,064 + +0.2
1,616,064 + -0.2
1,616,223 + -1.0
1,616,223 + -1.6
1,616,223 + +0.2
1,616,223 + -0.3
1,616,224 - +0.1
1,616,224 - -0.2
1,616,224 - +1.2
1,616,224 - +1.8
1,616,224 - +0.4
1,616,224 - -0.2
1,616,224 - -0.1
1,616,224 - +0.3
1,616,224 - -1.0
1,616,256 + -0.4
1,616,335 + +0.7
1,616,336 - +0.0
1,616,336 - -0.6
1,616,710 + A4249_RS08075 0.21 -0.3
1,616,710 + A4249_RS08075 0.21 +0.6
1,616,710 + A4249_RS08075 0.21 -0.0
1,616,710 + A4249_RS08075 0.21 +0.7
1,616,711 - A4249_RS08075 0.21 -0.7
1,616,711 - A4249_RS08075 0.21 +0.1
1,616,711 - A4249_RS08075 0.21 +0.1
1,616,711 - A4249_RS08075 0.21 +0.1
1,616,711 - A4249_RS08075 0.21 -0.2
1,616,711 - A4249_RS08075 0.21 +0.1
1,616,711 - A4249_RS08075 0.21 -0.1
1,616,711 - A4249_RS08075 0.21 +0.1
1,616,711 - A4249_RS08075 0.21 +1.5
1,616,711 - A4249_RS08075 0.21 +0.1
1,616,711 - A4249_RS08075 0.21 +1.3
1,616,711 - A4249_RS08075 0.21 -0.7
1,616,712 + A4249_RS08075 0.21 +0.0
1,616,713 - A4249_RS08075 0.21 -0.3
1,617,245 + A4249_RS08075 0.85 +1.1
1,617,246 - A4249_RS08075 0.85 +0.0
1,617,246 - A4249_RS08075 0.85 -0.3
1,617,246 - A4249_RS08075 0.85 +0.2
1,617,361 - +1.7
1,617,361 - -0.4
1,617,361 - -0.3
1,617,361 - -0.4
1,617,377 + -0.3
1,617,377 + +0.2
1,617,377 + +0.2
1,617,378 - -0.4
1,617,378 - -0.8
1,617,392 + A4249_RS17040 0.12 +0.3
1,617,393 - A4249_RS17040 0.13 -0.1
1,617,393 - A4249_RS17040 0.13 -0.3
1,617,393 - A4249_RS17040 0.13 -0.9
1,617,475 + A4249_RS17040 0.75 -0.5
1,617,518 + -0.5
1,617,518 + -0.1
1,617,518 + -0.1
1,617,518 + -0.2
1,617,519 - -0.2
1,617,519 - +0.7
1,617,519 - +0.1
1,617,567 - +0.0

Or see this region's nucleotide sequence