Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07115

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07110 and A4249_RS07115 are separated by 12 nucleotidesA4249_RS07115 and A4249_RS07120 are separated by 13 nucleotidesA4249_RS07120 and A4249_RS07125 are separated by 48 nucleotides A4249_RS07110: A4249_RS07110 - DUF4043 family protein, at 1,427,953 to 1,429,080 _RS07110 A4249_RS07115: A4249_RS07115 - hypothetical protein, at 1,429,093 to 1,429,497 _RS07115 A4249_RS07120: A4249_RS07120 - hypothetical protein, at 1,429,511 to 1,429,897 _RS07120 A4249_RS07125: A4249_RS07125 - hypothetical protein, at 1,429,946 to 1,430,512 _RS07125 Position (kb) 1429 1430Strain fitness (log2 ratio) -2 -1 0 1at 1428.196 kb on + strand, within A4249_RS07110at 1428.196 kb on + strand, within A4249_RS07110at 1428.196 kb on + strand, within A4249_RS07110at 1428.196 kb on + strand, within A4249_RS07110at 1428.197 kb on - strand, within A4249_RS07110at 1428.415 kb on + strand, within A4249_RS07110at 1428.415 kb on + strand, within A4249_RS07110at 1428.416 kb on - strand, within A4249_RS07110at 1428.582 kb on + strand, within A4249_RS07110at 1428.582 kb on + strand, within A4249_RS07110at 1428.582 kb on + strand, within A4249_RS07110at 1428.583 kb on - strand, within A4249_RS07110at 1428.772 kb on + strand, within A4249_RS07110at 1428.772 kb on + strand, within A4249_RS07110at 1428.772 kb on + strand, within A4249_RS07110at 1428.773 kb on - strand, within A4249_RS07110at 1428.773 kb on - strand, within A4249_RS07110at 1428.773 kb on - strand, within A4249_RS07110at 1428.773 kb on - strand, within A4249_RS07110at 1428.773 kb on - strand, within A4249_RS07110at 1428.773 kb on - strand, within A4249_RS07110at 1428.880 kb on + strand, within A4249_RS07110at 1428.956 kb on - strand, within A4249_RS07110at 1428.956 kb on - strand, within A4249_RS07110at 1428.956 kb on - strand, within A4249_RS07110at 1429.075 kb on + strandat 1429.075 kb on + strandat 1429.076 kb on - strandat 1429.076 kb on - strandat 1429.076 kb on - strandat 1429.076 kb on - strandat 1429.078 kb on + strandat 1429.078 kb on + strandat 1429.078 kb on + strandat 1429.078 kb on + strandat 1429.078 kb on + strandat 1429.078 kb on + strandat 1429.079 kb on - strandat 1429.079 kb on - strandat 1429.079 kb on - strandat 1429.079 kb on - strandat 1429.079 kb on - strandat 1429.079 kb on - strandat 1429.174 kb on + strand, within A4249_RS07115at 1429.174 kb on + strand, within A4249_RS07115at 1429.175 kb on - strand, within A4249_RS07115at 1429.402 kb on + strand, within A4249_RS07115at 1429.402 kb on + strand, within A4249_RS07115at 1429.402 kb on + strand, within A4249_RS07115at 1429.402 kb on + strand, within A4249_RS07115at 1429.402 kb on + strand, within A4249_RS07115at 1429.402 kb on + strand, within A4249_RS07115at 1429.403 kb on - strand, within A4249_RS07115at 1429.403 kb on - strand, within A4249_RS07115at 1429.403 kb on - strand, within A4249_RS07115at 1429.403 kb on - strand, within A4249_RS07115at 1429.471 kb on + strandat 1429.471 kb on + strandat 1429.472 kb on - strandat 1429.472 kb on - strandat 1429.483 kb on + strandat 1429.483 kb on + strandat 1429.483 kb on + strandat 1429.483 kb on + strandat 1429.483 kb on + strandat 1429.484 kb on - strandat 1429.484 kb on - strandat 1429.484 kb on - strandat 1429.484 kb on - strandat 1429.484 kb on - strandat 1429.495 kb on + strandat 1429.656 kb on - strand, within A4249_RS07120at 1429.656 kb on - strand, within A4249_RS07120at 1429.656 kb on - strand, within A4249_RS07120at 1429.656 kb on - strand, within A4249_RS07120at 1429.656 kb on - strand, within A4249_RS07120at 1430.105 kb on + strand, within A4249_RS07125at 1430.105 kb on + strand, within A4249_RS07125at 1430.106 kb on - strand, within A4249_RS07125at 1430.221 kb on + strand, within A4249_RS07125at 1430.221 kb on + strand, within A4249_RS07125at 1430.221 kb on + strand, within A4249_RS07125at 1430.221 kb on + strand, within A4249_RS07125at 1430.221 kb on + strand, within A4249_RS07125at 1430.221 kb on + strand, within A4249_RS07125at 1430.222 kb on - strand, within A4249_RS07125at 1430.222 kb on - strand, within A4249_RS07125at 1430.222 kb on - strand, within A4249_RS07125at 1430.222 kb on - strand, within A4249_RS07125at 1430.280 kb on - strand, within A4249_RS07125at 1430.280 kb on - strand, within A4249_RS07125at 1430.466 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,428,196 + A4249_RS07110 0.22 -0.4
1,428,196 + A4249_RS07110 0.22 +0.7
1,428,196 + A4249_RS07110 0.22 +0.5
1,428,196 + A4249_RS07110 0.22 -1.0
1,428,197 - A4249_RS07110 0.22 -0.3
1,428,415 + A4249_RS07110 0.41 +0.0
1,428,415 + A4249_RS07110 0.41 -0.1
1,428,416 - A4249_RS07110 0.41 -1.2
1,428,582 + A4249_RS07110 0.56 -0.1
1,428,582 + A4249_RS07110 0.56 +0.0
1,428,582 + A4249_RS07110 0.56 +0.3
1,428,583 - A4249_RS07110 0.56 -0.5
1,428,772 + A4249_RS07110 0.73 +0.1
1,428,772 + A4249_RS07110 0.73 -0.2
1,428,772 + A4249_RS07110 0.73 -0.2
1,428,773 - A4249_RS07110 0.73 -0.4
1,428,773 - A4249_RS07110 0.73 +0.4
1,428,773 - A4249_RS07110 0.73 -0.5
1,428,773 - A4249_RS07110 0.73 -0.1
1,428,773 - A4249_RS07110 0.73 -1.6
1,428,773 - A4249_RS07110 0.73 -1.0
1,428,880 + A4249_RS07110 0.82 -1.2
1,428,956 - A4249_RS07110 0.89 -0.1
1,428,956 - A4249_RS07110 0.89 -0.3
1,428,956 - A4249_RS07110 0.89 +0.3
1,429,075 + -0.3
1,429,075 + -0.3
1,429,076 - +0.3
1,429,076 - +0.7
1,429,076 - +0.1
1,429,076 - -1.3
1,429,078 + +0.3
1,429,078 + +0.3
1,429,078 + -1.3
1,429,078 + +0.2
1,429,078 + +0.2
1,429,078 + -0.5
1,429,079 - -0.7
1,429,079 - -2.3
1,429,079 - -0.7
1,429,079 - -1.9
1,429,079 - -0.2
1,429,079 - +0.4
1,429,174 + A4249_RS07115 0.20 -0.8
1,429,174 + A4249_RS07115 0.20 +0.6
1,429,175 - A4249_RS07115 0.20 -0.8
1,429,402 + A4249_RS07115 0.76 -1.0
1,429,402 + A4249_RS07115 0.76 -0.7
1,429,402 + A4249_RS07115 0.76 -1.0
1,429,402 + A4249_RS07115 0.76 -2.1
1,429,402 + A4249_RS07115 0.76 -0.6
1,429,402 + A4249_RS07115 0.76 +0.9
1,429,403 - A4249_RS07115 0.77 +0.4
1,429,403 - A4249_RS07115 0.77 -0.9
1,429,403 - A4249_RS07115 0.77 -0.4
1,429,403 - A4249_RS07115 0.77 -0.2
1,429,471 + -0.5
1,429,471 + -0.5
1,429,472 - -0.1
1,429,472 - -0.8
1,429,483 + +0.7
1,429,483 + -1.9
1,429,483 + -1.2
1,429,483 + -0.1
1,429,483 + -0.8
1,429,484 - +0.9
1,429,484 - -0.2
1,429,484 - -0.4
1,429,484 - +0.8
1,429,484 - -0.4
1,429,495 + -0.5
1,429,656 - A4249_RS07120 0.37 -0.4
1,429,656 - A4249_RS07120 0.37 -0.3
1,429,656 - A4249_RS07120 0.37 -0.3
1,429,656 - A4249_RS07120 0.37 -0.6
1,429,656 - A4249_RS07120 0.37 -0.9
1,430,105 + A4249_RS07125 0.28 -0.9
1,430,105 + A4249_RS07125 0.28 -0.5
1,430,106 - A4249_RS07125 0.28 +0.1
1,430,221 + A4249_RS07125 0.49 +0.6
1,430,221 + A4249_RS07125 0.49 -0.0
1,430,221 + A4249_RS07125 0.49 +0.7
1,430,221 + A4249_RS07125 0.49 -0.1
1,430,221 + A4249_RS07125 0.49 -0.5
1,430,221 + A4249_RS07125 0.49 +0.5
1,430,222 - A4249_RS07125 0.49 -0.4
1,430,222 - A4249_RS07125 0.49 -0.1
1,430,222 - A4249_RS07125 0.49 -0.3
1,430,222 - A4249_RS07125 0.49 -0.6
1,430,280 - A4249_RS07125 0.59 -1.6
1,430,280 - A4249_RS07125 0.59 +0.1
1,430,466 - -0.2

Or see this region's nucleotide sequence