Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06780

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06770 and A4249_RS06775 are separated by 315 nucleotidesA4249_RS06775 and A4249_RS06780 overlap by 11 nucleotidesA4249_RS06780 and A4249_RS06785 overlap by 4 nucleotides A4249_RS06770: A4249_RS06770 - ATP-binding protein, at 1,379,039 to 1,380,670 _RS06770 A4249_RS06775: A4249_RS06775 - guanylate kinase, at 1,380,986 to 1,381,627 _RS06775 A4249_RS06780: A4249_RS06780 - YicC family protein, at 1,381,617 to 1,382,501 _RS06780 A4249_RS06785: A4249_RS06785 - endolytic transglycosylase MltG, at 1,382,498 to 1,383,658 _RS06785 Position (kb) 1381 1382 1383Strain fitness (log2 ratio) -1 0 1 2at 1380.699 kb on + strandat 1380.794 kb on - strandat 1380.816 kb on + strandat 1380.816 kb on + strandat 1380.816 kb on + strandat 1380.816 kb on + strandat 1380.817 kb on - strandat 1380.817 kb on - strandat 1380.817 kb on - strandat 1380.841 kb on - strandat 1380.841 kb on - strandat 1380.841 kb on - strandat 1380.841 kb on - strandat 1380.877 kb on - strandat 1380.888 kb on + strandat 1380.889 kb on - strandat 1380.926 kb on + strandat 1380.926 kb on + strandat 1380.926 kb on + strandat 1380.926 kb on + strandat 1380.927 kb on - strandat 1380.927 kb on - strandat 1380.927 kb on - strandat 1380.927 kb on - strandat 1380.931 kb on + strandat 1380.932 kb on - strandat 1380.932 kb on - strandat 1380.941 kb on + strandat 1380.941 kb on + strandat 1382.234 kb on - strand, within A4249_RS06780at 1382.694 kb on + strand, within A4249_RS06785at 1382.694 kb on + strand, within A4249_RS06785at 1382.832 kb on + strand, within A4249_RS06785at 1383.162 kb on + strand, within A4249_RS06785at 1383.162 kb on + strand, within A4249_RS06785at 1383.162 kb on + strand, within A4249_RS06785at 1383.163 kb on - strand, within A4249_RS06785at 1383.163 kb on - strand, within A4249_RS06785at 1383.163 kb on - strand, within A4249_RS06785at 1383.354 kb on + strand, within A4249_RS06785

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,380,699 + -0.1
1,380,794 - +0.2
1,380,816 + +0.3
1,380,816 + -0.1
1,380,816 + +0.6
1,380,816 + +0.5
1,380,817 - -1.2
1,380,817 - -0.1
1,380,817 - -0.1
1,380,841 - +0.4
1,380,841 - +1.3
1,380,841 - -0.6
1,380,841 - -0.1
1,380,877 - -0.0
1,380,888 + +0.1
1,380,889 - +0.0
1,380,926 + -1.3
1,380,926 + +0.1
1,380,926 + -0.2
1,380,926 + +0.5
1,380,927 - +0.3
1,380,927 - -1.1
1,380,927 - +0.2
1,380,927 - -0.0
1,380,931 + +0.4
1,380,932 - +0.4
1,380,932 - -0.1
1,380,941 + +0.6
1,380,941 + +0.1
1,382,234 - A4249_RS06780 0.70 +0.1
1,382,694 + A4249_RS06785 0.17 -0.1
1,382,694 + A4249_RS06785 0.17 +1.8
1,382,832 + A4249_RS06785 0.29 +0.9
1,383,162 + A4249_RS06785 0.57 +0.4
1,383,162 + A4249_RS06785 0.57 -0.0
1,383,162 + A4249_RS06785 0.57 +1.4
1,383,163 - A4249_RS06785 0.57 +0.9
1,383,163 - A4249_RS06785 0.57 -1.2
1,383,163 - A4249_RS06785 0.57 +0.4
1,383,354 + A4249_RS06785 0.74 +0.5

Or see this region's nucleotide sequence