Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06645

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06640 and A4249_RS06645 are separated by 91 nucleotidesA4249_RS06645 and A4249_RS06650 are separated by 61 nucleotidesA4249_RS06650 and A4249_RS06655 overlap by 4 nucleotides A4249_RS06640: A4249_RS06640 - PPC domain-containing protein, at 1,352,326 to 1,354,224 _RS06640 A4249_RS06645: A4249_RS06645 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase, at 1,354,316 to 1,355,239 _RS06645 A4249_RS06650: A4249_RS06650 - LemA family protein, at 1,355,301 to 1,355,984 _RS06650 A4249_RS06655: A4249_RS06655 - TPM domain-containing protein, at 1,355,981 to 1,356,808 _RS06655 Position (kb) 1354 1355 1356Strain fitness (log2 ratio) -3 -2 -1 0 1at 1353.344 kb on + strand, within A4249_RS06640at 1353.344 kb on + strand, within A4249_RS06640at 1353.344 kb on + strand, within A4249_RS06640at 1353.344 kb on + strand, within A4249_RS06640at 1353.344 kb on + strand, within A4249_RS06640at 1353.345 kb on - strand, within A4249_RS06640at 1353.345 kb on - strand, within A4249_RS06640at 1353.470 kb on + strand, within A4249_RS06640at 1353.512 kb on + strand, within A4249_RS06640at 1353.512 kb on + strand, within A4249_RS06640at 1353.512 kb on + strand, within A4249_RS06640at 1353.512 kb on + strand, within A4249_RS06640at 1353.512 kb on + strand, within A4249_RS06640at 1353.512 kb on + strand, within A4249_RS06640at 1353.512 kb on + strand, within A4249_RS06640at 1353.512 kb on + strand, within A4249_RS06640at 1353.512 kb on + strand, within A4249_RS06640at 1353.512 kb on + strand, within A4249_RS06640at 1353.513 kb on - strand, within A4249_RS06640at 1353.513 kb on - strand, within A4249_RS06640at 1353.513 kb on - strand, within A4249_RS06640at 1353.513 kb on - strand, within A4249_RS06640at 1353.513 kb on - strand, within A4249_RS06640at 1353.513 kb on - strand, within A4249_RS06640at 1353.513 kb on - strand, within A4249_RS06640at 1353.695 kb on + strand, within A4249_RS06640at 1353.695 kb on + strand, within A4249_RS06640at 1353.695 kb on + strand, within A4249_RS06640at 1353.696 kb on - strand, within A4249_RS06640at 1353.696 kb on - strand, within A4249_RS06640at 1353.830 kb on + strand, within A4249_RS06640at 1353.830 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.875 kb on + strand, within A4249_RS06640at 1353.876 kb on - strand, within A4249_RS06640at 1353.876 kb on - strand, within A4249_RS06640at 1353.876 kb on - strand, within A4249_RS06640at 1353.876 kb on - strand, within A4249_RS06640at 1353.876 kb on - strand, within A4249_RS06640at 1353.876 kb on - strand, within A4249_RS06640at 1353.876 kb on - strand, within A4249_RS06640at 1353.876 kb on - strand, within A4249_RS06640at 1353.876 kb on - strand, within A4249_RS06640at 1353.876 kb on - strand, within A4249_RS06640at 1353.876 kb on - strand, within A4249_RS06640at 1353.876 kb on - strand, within A4249_RS06640at 1353.876 kb on - strand, within A4249_RS06640at 1353.977 kb on + strand, within A4249_RS06640at 1353.977 kb on + strand, within A4249_RS06640at 1353.978 kb on - strand, within A4249_RS06640at 1353.989 kb on + strand, within A4249_RS06640at 1353.989 kb on + strand, within A4249_RS06640at 1353.989 kb on + strand, within A4249_RS06640at 1353.989 kb on + strand, within A4249_RS06640at 1354.056 kb on - strandat 1354.064 kb on + strandat 1354.064 kb on + strandat 1354.064 kb on + strandat 1354.065 kb on - strandat 1354.065 kb on - strandat 1354.065 kb on - strandat 1354.065 kb on - strandat 1354.065 kb on - strandat 1354.239 kb on + strandat 1354.239 kb on + strandat 1354.239 kb on + strandat 1354.239 kb on + strandat 1354.239 kb on + strandat 1354.239 kb on + strandat 1354.240 kb on - strandat 1354.240 kb on - strandat 1354.240 kb on - strandat 1354.253 kb on + strandat 1354.253 kb on + strandat 1354.253 kb on + strandat 1354.253 kb on + strandat 1354.253 kb on + strandat 1354.253 kb on + strandat 1354.254 kb on - strandat 1354.276 kb on + strandat 1354.276 kb on + strandat 1354.277 kb on - strandat 1354.277 kb on - strandat 1355.213 kb on - strandat 1355.261 kb on + strandat 1355.261 kb on + strandat 1355.262 kb on - strandat 1355.262 kb on - strandat 1355.262 kb on - strandat 1355.262 kb on - strandat 1355.262 kb on - strandat 1355.262 kb on - strandat 1355.377 kb on - strand, within A4249_RS06650at 1355.439 kb on + strand, within A4249_RS06650at 1355.439 kb on + strand, within A4249_RS06650at 1355.440 kb on - strand, within A4249_RS06650at 1355.440 kb on - strand, within A4249_RS06650at 1355.440 kb on - strand, within A4249_RS06650at 1355.579 kb on + strand, within A4249_RS06650at 1355.601 kb on + strand, within A4249_RS06650at 1355.602 kb on - strand, within A4249_RS06650at 1355.665 kb on - strand, within A4249_RS06650at 1355.674 kb on + strand, within A4249_RS06650at 1355.674 kb on + strand, within A4249_RS06650at 1355.675 kb on - strand, within A4249_RS06650at 1355.675 kb on - strand, within A4249_RS06650at 1355.675 kb on - strand, within A4249_RS06650at 1355.675 kb on - strand, within A4249_RS06650at 1355.675 kb on - strand, within A4249_RS06650at 1355.675 kb on - strand, within A4249_RS06650at 1355.754 kb on + strand, within A4249_RS06650at 1355.754 kb on + strand, within A4249_RS06650at 1355.754 kb on + strand, within A4249_RS06650at 1355.754 kb on + strand, within A4249_RS06650at 1355.755 kb on - strand, within A4249_RS06650at 1355.775 kb on + strand, within A4249_RS06650at 1355.775 kb on + strand, within A4249_RS06650at 1355.776 kb on - strand, within A4249_RS06650at 1355.776 kb on - strand, within A4249_RS06650at 1355.776 kb on - strand, within A4249_RS06650at 1355.776 kb on - strand, within A4249_RS06650at 1355.776 kb on - strand, within A4249_RS06650at 1355.904 kb on - strand, within A4249_RS06650at 1355.904 kb on - strand, within A4249_RS06650

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,353,344 + A4249_RS06640 0.54 -0.1
1,353,344 + A4249_RS06640 0.54 -2.5
1,353,344 + A4249_RS06640 0.54 -0.3
1,353,344 + A4249_RS06640 0.54 -0.0
1,353,344 + A4249_RS06640 0.54 -0.8
1,353,345 - A4249_RS06640 0.54 -0.6
1,353,345 - A4249_RS06640 0.54 -0.1
1,353,470 + A4249_RS06640 0.60 -0.7
1,353,512 + A4249_RS06640 0.62 +0.5
1,353,512 + A4249_RS06640 0.62 -0.0
1,353,512 + A4249_RS06640 0.62 -0.1
1,353,512 + A4249_RS06640 0.62 -0.7
1,353,512 + A4249_RS06640 0.62 -0.1
1,353,512 + A4249_RS06640 0.62 -0.4
1,353,512 + A4249_RS06640 0.62 +0.4
1,353,512 + A4249_RS06640 0.62 +0.3
1,353,512 + A4249_RS06640 0.62 -0.0
1,353,512 + A4249_RS06640 0.62 -1.0
1,353,513 - A4249_RS06640 0.63 +0.0
1,353,513 - A4249_RS06640 0.63 +0.8
1,353,513 - A4249_RS06640 0.63 +0.2
1,353,513 - A4249_RS06640 0.63 +0.1
1,353,513 - A4249_RS06640 0.63 -0.5
1,353,513 - A4249_RS06640 0.63 -1.1
1,353,513 - A4249_RS06640 0.63 -0.2
1,353,695 + A4249_RS06640 0.72 -0.3
1,353,695 + A4249_RS06640 0.72 -0.4
1,353,695 + A4249_RS06640 0.72 -0.3
1,353,696 - A4249_RS06640 0.72 -0.6
1,353,696 - A4249_RS06640 0.72 +0.4
1,353,830 + A4249_RS06640 0.79 +0.4
1,353,830 + A4249_RS06640 0.79 -1.4
1,353,875 + A4249_RS06640 0.82 -0.8
1,353,875 + A4249_RS06640 0.82 +0.4
1,353,875 + A4249_RS06640 0.82 +0.5
1,353,875 + A4249_RS06640 0.82 +0.3
1,353,875 + A4249_RS06640 0.82 +0.3
1,353,875 + A4249_RS06640 0.82 +0.3
1,353,875 + A4249_RS06640 0.82 -0.6
1,353,875 + A4249_RS06640 0.82 +0.2
1,353,875 + A4249_RS06640 0.82 +1.4
1,353,875 + A4249_RS06640 0.82 -0.2
1,353,875 + A4249_RS06640 0.82 +0.0
1,353,875 + A4249_RS06640 0.82 -0.8
1,353,875 + A4249_RS06640 0.82 -0.1
1,353,875 + A4249_RS06640 0.82 -0.2
1,353,875 + A4249_RS06640 0.82 +0.2
1,353,875 + A4249_RS06640 0.82 +0.2
1,353,875 + A4249_RS06640 0.82 +1.0
1,353,875 + A4249_RS06640 0.82 +0.7
1,353,875 + A4249_RS06640 0.82 -0.2
1,353,876 - A4249_RS06640 0.82 +0.2
1,353,876 - A4249_RS06640 0.82 +0.2
1,353,876 - A4249_RS06640 0.82 -0.7
1,353,876 - A4249_RS06640 0.82 -0.2
1,353,876 - A4249_RS06640 0.82 -0.4
1,353,876 - A4249_RS06640 0.82 -0.1
1,353,876 - A4249_RS06640 0.82 -0.5
1,353,876 - A4249_RS06640 0.82 +0.6
1,353,876 - A4249_RS06640 0.82 +0.6
1,353,876 - A4249_RS06640 0.82 -1.0
1,353,876 - A4249_RS06640 0.82 +0.2
1,353,876 - A4249_RS06640 0.82 -0.3
1,353,876 - A4249_RS06640 0.82 +0.4
1,353,977 + A4249_RS06640 0.87 -0.0
1,353,977 + A4249_RS06640 0.87 +0.2
1,353,978 - A4249_RS06640 0.87 +0.3
1,353,989 + A4249_RS06640 0.88 -0.0
1,353,989 + A4249_RS06640 0.88 +0.6
1,353,989 + A4249_RS06640 0.88 -1.8
1,353,989 + A4249_RS06640 0.88 +0.7
1,354,056 - -0.3
1,354,064 + +1.0
1,354,064 + -1.3
1,354,064 + +0.0
1,354,065 - +0.2
1,354,065 - -0.1
1,354,065 - -0.7
1,354,065 - -0.3
1,354,065 - -0.5
1,354,239 + -0.5
1,354,239 + -0.4
1,354,239 + +0.5
1,354,239 + -0.2
1,354,239 + +0.1
1,354,239 + -0.2
1,354,240 - +0.2
1,354,240 - -0.4
1,354,240 - +0.3
1,354,253 + +0.4
1,354,253 + -0.1
1,354,253 + +0.3
1,354,253 + +0.2
1,354,253 + -0.2
1,354,253 + +0.3
1,354,254 - -0.6
1,354,276 + -0.9
1,354,276 + -0.0
1,354,277 - -0.4
1,354,277 - -1.0
1,355,213 - -0.2
1,355,261 + +0.5
1,355,261 + +0.4
1,355,262 - -0.8
1,355,262 - +0.2
1,355,262 - +0.3
1,355,262 - +0.0
1,355,262 - +0.4
1,355,262 - -0.6
1,355,377 - A4249_RS06650 0.11 +0.7
1,355,439 + A4249_RS06650 0.20 -1.0
1,355,439 + A4249_RS06650 0.20 -0.1
1,355,440 - A4249_RS06650 0.20 -0.1
1,355,440 - A4249_RS06650 0.20 -0.1
1,355,440 - A4249_RS06650 0.20 +1.5
1,355,579 + A4249_RS06650 0.41 +0.4
1,355,601 + A4249_RS06650 0.44 -0.5
1,355,602 - A4249_RS06650 0.44 +0.1
1,355,665 - A4249_RS06650 0.53 -0.2
1,355,674 + A4249_RS06650 0.55 +0.1
1,355,674 + A4249_RS06650 0.55 -0.7
1,355,675 - A4249_RS06650 0.55 +0.2
1,355,675 - A4249_RS06650 0.55 +0.3
1,355,675 - A4249_RS06650 0.55 -0.0
1,355,675 - A4249_RS06650 0.55 +0.8
1,355,675 - A4249_RS06650 0.55 +0.3
1,355,675 - A4249_RS06650 0.55 +0.1
1,355,754 + A4249_RS06650 0.66 -1.6
1,355,754 + A4249_RS06650 0.66 +0.2
1,355,754 + A4249_RS06650 0.66 +1.1
1,355,754 + A4249_RS06650 0.66 -0.3
1,355,755 - A4249_RS06650 0.66 -0.0
1,355,775 + A4249_RS06650 0.69 -0.9
1,355,775 + A4249_RS06650 0.69 +0.2
1,355,776 - A4249_RS06650 0.69 -0.3
1,355,776 - A4249_RS06650 0.69 +0.2
1,355,776 - A4249_RS06650 0.69 -0.4
1,355,776 - A4249_RS06650 0.69 +0.3
1,355,776 - A4249_RS06650 0.69 -3.3
1,355,904 - A4249_RS06650 0.88 -0.2
1,355,904 - A4249_RS06650 0.88 -1.2

Or see this region's nucleotide sequence