Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06630

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06625 and A4249_RS06630 are separated by 3 nucleotidesA4249_RS06630 and A4249_RS06635 are separated by 6 nucleotidesA4249_RS06635 and A4249_RS06640 are separated by 218 nucleotides A4249_RS06625: A4249_RS06625 - urocanate hydratase, at 1,348,331 to 1,349,995 _RS06625 A4249_RS06630: A4249_RS06630 - histidine ammonia-lyase, at 1,349,999 to 1,351,528 _RS06630 A4249_RS06635: A4249_RS06635 - manganese efflux pump MntP family protein, at 1,351,535 to 1,352,107 _RS06635 A4249_RS06640: A4249_RS06640 - PPC domain-containing protein, at 1,352,326 to 1,354,224 _RS06640 Position (kb) 1349 1350 1351 1352Strain fitness (log2 ratio) -2 -1 0 1at 1349.141 kb on + strand, within A4249_RS06625at 1349.141 kb on + strand, within A4249_RS06625at 1349.141 kb on + strand, within A4249_RS06625at 1349.142 kb on - strand, within A4249_RS06625at 1349.142 kb on - strand, within A4249_RS06625at 1349.289 kb on - strand, within A4249_RS06625at 1349.366 kb on + strand, within A4249_RS06625at 1349.366 kb on + strand, within A4249_RS06625at 1349.366 kb on + strand, within A4249_RS06625at 1349.366 kb on + strand, within A4249_RS06625at 1349.366 kb on + strand, within A4249_RS06625at 1349.366 kb on + strand, within A4249_RS06625at 1349.366 kb on + strand, within A4249_RS06625at 1349.366 kb on + strand, within A4249_RS06625at 1349.367 kb on - strand, within A4249_RS06625at 1349.367 kb on - strand, within A4249_RS06625at 1349.367 kb on - strand, within A4249_RS06625at 1349.367 kb on - strand, within A4249_RS06625at 1349.367 kb on - strand, within A4249_RS06625at 1349.638 kb on + strand, within A4249_RS06625at 1349.638 kb on + strand, within A4249_RS06625at 1349.638 kb on + strand, within A4249_RS06625at 1349.639 kb on - strand, within A4249_RS06625at 1349.640 kb on + strand, within A4249_RS06625at 1349.640 kb on + strand, within A4249_RS06625at 1349.640 kb on + strand, within A4249_RS06625at 1349.641 kb on - strand, within A4249_RS06625at 1349.813 kb on + strand, within A4249_RS06625at 1349.814 kb on - strand, within A4249_RS06625at 1349.814 kb on - strand, within A4249_RS06625at 1350.127 kb on - strandat 1350.158 kb on + strand, within A4249_RS06630at 1350.158 kb on + strand, within A4249_RS06630at 1350.158 kb on + strand, within A4249_RS06630at 1350.159 kb on - strand, within A4249_RS06630at 1350.232 kb on + strand, within A4249_RS06630at 1350.232 kb on + strand, within A4249_RS06630at 1350.232 kb on + strand, within A4249_RS06630at 1350.233 kb on - strand, within A4249_RS06630at 1350.233 kb on - strand, within A4249_RS06630at 1350.233 kb on - strand, within A4249_RS06630at 1350.233 kb on - strand, within A4249_RS06630at 1350.233 kb on - strand, within A4249_RS06630at 1350.233 kb on - strand, within A4249_RS06630at 1350.504 kb on + strand, within A4249_RS06630at 1350.504 kb on + strand, within A4249_RS06630at 1350.504 kb on + strand, within A4249_RS06630at 1350.505 kb on - strand, within A4249_RS06630at 1350.505 kb on - strand, within A4249_RS06630at 1350.505 kb on - strand, within A4249_RS06630at 1350.839 kb on + strand, within A4249_RS06630at 1350.839 kb on + strand, within A4249_RS06630at 1350.839 kb on + strand, within A4249_RS06630at 1351.051 kb on + strand, within A4249_RS06630at 1351.051 kb on + strand, within A4249_RS06630at 1351.051 kb on + strand, within A4249_RS06630at 1351.052 kb on - strand, within A4249_RS06630at 1351.052 kb on - strand, within A4249_RS06630at 1351.300 kb on + strand, within A4249_RS06630at 1351.424 kb on + strandat 1351.424 kb on + strandat 1351.439 kb on + strandat 1351.439 kb on + strandat 1351.439 kb on + strandat 1351.440 kb on - strandat 1351.440 kb on - strandat 1351.440 kb on - strandat 1351.714 kb on + strand, within A4249_RS06635at 1351.714 kb on + strand, within A4249_RS06635at 1351.714 kb on + strand, within A4249_RS06635at 1351.714 kb on + strand, within A4249_RS06635at 1351.714 kb on + strand, within A4249_RS06635at 1351.715 kb on - strand, within A4249_RS06635at 1351.715 kb on - strand, within A4249_RS06635at 1351.715 kb on - strand, within A4249_RS06635at 1351.715 kb on - strand, within A4249_RS06635at 1351.715 kb on - strand, within A4249_RS06635at 1351.715 kb on - strand, within A4249_RS06635at 1351.715 kb on - strand, within A4249_RS06635at 1351.715 kb on - strand, within A4249_RS06635at 1352.042 kb on + strand, within A4249_RS06635at 1352.226 kb on + strandat 1352.226 kb on + strandat 1352.226 kb on + strandat 1352.226 kb on + strandat 1352.226 kb on + strandat 1352.226 kb on + strandat 1352.226 kb on + strandat 1352.227 kb on - strandat 1352.227 kb on - strandat 1352.227 kb on - strandat 1352.227 kb on - strandat 1352.262 kb on + strandat 1352.262 kb on + strandat 1352.262 kb on + strandat 1352.263 kb on - strandat 1352.263 kb on - strandat 1352.263 kb on - strandat 1352.263 kb on - strandat 1352.287 kb on + strandat 1352.287 kb on + strandat 1352.287 kb on + strandat 1352.287 kb on + strandat 1352.288 kb on - strandat 1352.288 kb on - strandat 1352.417 kb on + strandat 1352.417 kb on + strandat 1352.418 kb on - strandat 1352.418 kb on - strandat 1352.441 kb on + strandat 1352.462 kb on + strandat 1352.462 kb on + strandat 1352.462 kb on + strandat 1352.462 kb on + strandat 1352.463 kb on - strandat 1352.463 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,349,141 + A4249_RS06625 0.49 +1.2
1,349,141 + A4249_RS06625 0.49 +0.2
1,349,141 + A4249_RS06625 0.49 -0.3
1,349,142 - A4249_RS06625 0.49 -0.4
1,349,142 - A4249_RS06625 0.49 -0.6
1,349,289 - A4249_RS06625 0.58 +0.0
1,349,366 + A4249_RS06625 0.62 +0.7
1,349,366 + A4249_RS06625 0.62 -0.3
1,349,366 + A4249_RS06625 0.62 -1.8
1,349,366 + A4249_RS06625 0.62 +0.1
1,349,366 + A4249_RS06625 0.62 +0.9
1,349,366 + A4249_RS06625 0.62 -0.0
1,349,366 + A4249_RS06625 0.62 +0.3
1,349,366 + A4249_RS06625 0.62 +0.7
1,349,367 - A4249_RS06625 0.62 +0.5
1,349,367 - A4249_RS06625 0.62 -0.2
1,349,367 - A4249_RS06625 0.62 -0.4
1,349,367 - A4249_RS06625 0.62 +1.1
1,349,367 - A4249_RS06625 0.62 +0.6
1,349,638 + A4249_RS06625 0.78 +0.3
1,349,638 + A4249_RS06625 0.78 -0.6
1,349,638 + A4249_RS06625 0.78 -0.5
1,349,639 - A4249_RS06625 0.79 -0.2
1,349,640 + A4249_RS06625 0.79 -0.3
1,349,640 + A4249_RS06625 0.79 +0.3
1,349,640 + A4249_RS06625 0.79 -0.2
1,349,641 - A4249_RS06625 0.79 -0.6
1,349,813 + A4249_RS06625 0.89 +0.5
1,349,814 - A4249_RS06625 0.89 -0.5
1,349,814 - A4249_RS06625 0.89 -0.5
1,350,127 - +0.9
1,350,158 + A4249_RS06630 0.10 -0.7
1,350,158 + A4249_RS06630 0.10 +0.7
1,350,158 + A4249_RS06630 0.10 +0.2
1,350,159 - A4249_RS06630 0.10 -1.3
1,350,232 + A4249_RS06630 0.15 +0.4
1,350,232 + A4249_RS06630 0.15 +0.0
1,350,232 + A4249_RS06630 0.15 -0.3
1,350,233 - A4249_RS06630 0.15 -0.8
1,350,233 - A4249_RS06630 0.15 -0.1
1,350,233 - A4249_RS06630 0.15 +0.4
1,350,233 - A4249_RS06630 0.15 +0.1
1,350,233 - A4249_RS06630 0.15 +0.7
1,350,233 - A4249_RS06630 0.15 +0.3
1,350,504 + A4249_RS06630 0.33 -0.1
1,350,504 + A4249_RS06630 0.33 -0.2
1,350,504 + A4249_RS06630 0.33 +0.6
1,350,505 - A4249_RS06630 0.33 +0.8
1,350,505 - A4249_RS06630 0.33 -0.1
1,350,505 - A4249_RS06630 0.33 +0.8
1,350,839 + A4249_RS06630 0.55 +0.6
1,350,839 + A4249_RS06630 0.55 -0.3
1,350,839 + A4249_RS06630 0.55 -0.0
1,351,051 + A4249_RS06630 0.69 +0.4
1,351,051 + A4249_RS06630 0.69 -0.3
1,351,051 + A4249_RS06630 0.69 +0.3
1,351,052 - A4249_RS06630 0.69 +0.0
1,351,052 - A4249_RS06630 0.69 -1.0
1,351,300 + A4249_RS06630 0.85 +0.5
1,351,424 + -0.3
1,351,424 + +0.6
1,351,439 + +0.6
1,351,439 + -0.4
1,351,439 + -0.2
1,351,440 - +0.3
1,351,440 - +0.4
1,351,440 - +1.1
1,351,714 + A4249_RS06635 0.31 +0.1
1,351,714 + A4249_RS06635 0.31 -0.2
1,351,714 + A4249_RS06635 0.31 -0.5
1,351,714 + A4249_RS06635 0.31 -0.2
1,351,714 + A4249_RS06635 0.31 +0.6
1,351,715 - A4249_RS06635 0.31 +0.8
1,351,715 - A4249_RS06635 0.31 +0.7
1,351,715 - A4249_RS06635 0.31 -1.2
1,351,715 - A4249_RS06635 0.31 +0.3
1,351,715 - A4249_RS06635 0.31 -0.9
1,351,715 - A4249_RS06635 0.31 +0.2
1,351,715 - A4249_RS06635 0.31 +0.3
1,351,715 - A4249_RS06635 0.31 +0.2
1,352,042 + A4249_RS06635 0.88 -0.7
1,352,226 + +0.2
1,352,226 + +0.3
1,352,226 + +0.9
1,352,226 + -0.5
1,352,226 + -0.8
1,352,226 + +0.4
1,352,226 + -0.4
1,352,227 - -0.4
1,352,227 - -0.5
1,352,227 - +0.4
1,352,227 - -0.0
1,352,262 + +0.5
1,352,262 + -0.3
1,352,262 + -2.0
1,352,263 - -0.3
1,352,263 - +0.7
1,352,263 - +0.4
1,352,263 - +0.5
1,352,287 + -0.2
1,352,287 + -0.5
1,352,287 + -0.0
1,352,287 + -0.2
1,352,288 - +0.0
1,352,288 - +0.4
1,352,417 + +0.5
1,352,417 + -0.2
1,352,418 - -1.5
1,352,418 - +0.2
1,352,441 + -0.2
1,352,462 + -0.1
1,352,462 + -0.5
1,352,462 + -0.1
1,352,462 + -0.0
1,352,463 - +0.7
1,352,463 - -0.0

Or see this region's nucleotide sequence